SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4099

Length: 1528 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene4099 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] dbj\|BAB08749.1\| carbonyl reductase-like protein [Arabidopsis thaliana] gb\|AAV74232.1\| At5g51030 [Arabidopsis thaliana] gb\|AAW39010.1\| At5g51030 [Arabidopsis thaliana] gb\|AED9602	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Carbonyl reductase, putative	-	-	4.878e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prostaglandin-E(2) 9-reductase.	EC:1.1.1.189	-	3.413e-25	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arachidonic acid metabolism	00590		3.413e-25	%
Sma3	Metabolic pathways	01100		3.413e-25	%
Sma3	(+)-neomenthol dehydrogenase.	EC:1.1.1.208	-	3.297e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Monoterpenoid biosynthesis	00902		3.297e-11	%

Source	Gene names
Sma3	AT1G01800; At1g01800; At2g24190; At3g59710; At3g61220; At5g51030; At5g61830; E9008; F27D4.10; GSVIVT00011657001; GSVIVT00017397001; GSVIVT00022154001; GSVIVT00026770001; GSVIVT00026773001; GSVIVT00026774001; GSVIVT00026775001; GSVIVT00026776001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	salutaridine reductase (NADPH) activity	GO:0047037	Molecular Function	-
Sma3	(+)-neomenthol dehydrogenase activity	GO:0047501	Molecular Function	-
Sma3	(-)-menthol dehydrogenase activity	GO:0047504	Molecular Function	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51030.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:20747862-20749352 REVERSE LENGTH=314	46%
RefSeq	Arabidopsis thaliana	NP_199916.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002318788.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC41

Fln msg:

Fln protein: MASSRWWSRDTIAVVTGANKGIGYEIVRQLAKEDVTVILTARNEKLGMLSTERLRAEGLNVDFHTLDVCSTDSIANLSQNIKQKYGGFDILVNNAATADYGNSHEERKLVLQANYWGVKNVTRGLLPLLRPSSSGVRIINVSSHLGMLERIKNATLVQQLSDIGNLSEEKIDSVVQQFLEDSNSGNLASRGWPKNLSAYCVSKVALNAYTRVLAKELAKRPEGQNFYVNSMAPGYVKTDLNRNSGILTPEQGADTVVWLALLPPGGPTGQFFYQRKYLAF*

Protein Length: 282

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCTGGGACACTAAATGGTACAGGGAAGGTTGTAACTACATTTTCGATTTATACCAAGTTTTACTGCAGTGGGTTCTTCGCGGCAGGATTGTGGTGAGAAAACTTCCATGTGGACGGCACCATGACAGTGACCGGTTGTGATTTGCGTGGTCTTTTAAACACCGGGGCCTGCTTCCATTTCGCTACACCTCCCCCGCTTGTCTAATTATCTCTTGACATATTCTTTGCACTCAAATCTGTGTAATTGGTTTCGTGCGAGGTTTCTGGAAGCTACCGAGCTACCAGCAGGAAACC_-_ATGGCGTCCTCAAGGTGGTGGTCAAGGGATACTATTGCTGTTGTCACTGGTGCAAATAAAGGCATTGGGTATGAAATTGTCCGCCAGTTAGCAAAGGAAGATGTCACAGTGATATTGACAGCAAGAAATGAGAAATTGGGCATGCTATCAACTGAAAGGCTTCGGGCAGAAGGCCTTAATGTTGATTTCCACACGTTGGATGTATGCAGTACCGACTCAATTGCCAATCTGTCACAAAATATTAAGCAGAAGTATGGTGGATTTGACATCTTGGTAAATAATGCAGCAACTGCAGACTATGGAAATAGTCATGAAGAACGAAAACTGGTTCTGCAAGCCAATTATTGGGGGGTTAAAAATGTAACTAGAGGGCTTCTTCCTCTTCTTAGACCATCTTCTTCAGGTGTTCGAATTATCAATGTCAGTTCACATCTTGGCATGTTAGAGAGAATCAAGAATGCGACTTTGGTTCAGCAACTGTCTGACATAGGCAATCTTTCAGAGGAAAAGATAGATTCTGTTGTGCAACAGTTTTTAGAGGATTCCAACTCAGGTAACCTGGCATCCAGGGGTTGGCCTAAGAATCTCTCAGCATATTGTGTTTCAAAAGTGGCACTCAATGCATACACGAGAGTGCTGGCTAAAGAGTTGGCCAAGCGCCCCGAGGGTCAAAACTTTTATGTGAATAGCATGGCCCCCGGCTATGTCAAGACTGACCTGAACAGAAATTCTGGCATTCTTACACCAGAGCAGGGTGCTGATACAGTTGTTTGGCTTGCACTGCTTCCTCCTGGTGGGCCAACGGGTCAGTTTTTTTATCAGAGGAAGTATCTTGCATTTTGA___AAGACTCAGTTCAGTGATTGAAACCAGTTGACATTCACCTCAGGCAGAATGGAAGCATAGTTACCTGTATATTTTCATGTCATGAAGTTGTTTCTCCATTAATTTCCACTGGCAGGTTGTGCATAAAGTAAAGTGTATGGTATATTTGCTGTTTAATAATCTTTGTATTTTTCTAGCATTTTGAATCCACAACCATAGAATCTCCAGTCAGGTATGTGGTTTTTTATATGCAATTTCCAAATGTCTGCAATTTATTTGCATTGAAATTCATATCATTATAAATTTGAATGAAATTGGACAAGCTTTATTTAAGATATTTCTCATGCTAGTATAAGGACATCTTCAGCGATTATTTTTAGGT

Fln Alignment:

Contig4099___MASSRWWSRDTIAVVTGANKGIGYEIVRQLAKEDVTVILTARNEKLGMLSTERLRAEGLNVDFHTLDVCSTDSIANLSQNIKQKYGGFDILVNNAATADYGNSHEERKLVLQANYWGVKNVTXXXXXXXXXXXXGVRIINVSSHLGMLERIKNATLVQQLSDIGNLSEEKIDSVVQQFLEDSNSGNLASRGWPKNLSAYCVSKVALNAYTRVLAKELAKRPEGQNFYVNSMAPGYVKTDLNRNSGILTPEQGADTVVWLALLPPGGPTGQFFYQRKYLAF
D5AC41______________MASSRWWSRDTVAVVTGANKGIGYEIVRQLAKEDVTVILTARNEQLGMLSTEKLRAEGLNIDFHTLDVCSTDSIASLSQNIKQKYGGFDILVNNAATADYGNSYEELKLVLQTNYWGVKNVTKGLLPLLRPSSSGARIINVSSHLGMLERIKNATFVQQLSDIGNLSEEKVDAFVQQFLEDSNSGDLASRGWPKNLSAYCVSKVALNAYTRVLAKELPNRPEGQNFYVNSMAPGYVKTDLNRNSGILTPEKGADTVVWLALLPPGGPTGQFFYQRKYLAF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
870		25		75	0.996473
1101	87		12		0.992554
1316	50	37	12		1.0
1317		50	50		1.0
1318		87	12		0.992554
1321	62			37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain