SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4097

Length: 2254 nt

UniGene Fasta

>sp_v3.0_unigene4097
AACACTGGCGACTCTTTACCGCAGTTCCGTTGGTCCTACTGACATTAGATCGAATAGATCGAACAGGCTGATCGGCCATGGTGATCCTTTGGGCGGGCTGCAAGAACTGGTAAACTTCCGCGGCTGGATCTCTGAATATTGCTGTTCGGTTTACACATATTCAAAGGTGTAAAGTTGTGTTGTTCACAACTTTATTAAAATAACGATGACTGGAACCCAGGCATCCAATGTTCGCATTACACGGGCGAGGGCTGCAAAGTCCACGTTGAACAATGCCCTTCCTCCTCTTCCGCCAGCCCAAGGTAAACCGAGAGGGAAACGTGCAGCAACGGAGTCAAATATTTCCGGATCCGGTGTTGCTGCTGAACCCCTTAAACGACGTGCAGTGTTATCAGATGTGTCCAATATCTGTAAGGAAGCGGCCGCGGTTGATTGCTTGAAAAAACCAAAAGCAGTTAAGGTTGTATATCAGAATGCCAATGCCAAGGGAAGAGGCCGAGGAATTCCTCGGAATAACAAGAAGATTACTCAAGAGGCAGAGATTAAAAAAGAGACCTCACCAGCTATTTGTAATGTTGACGATGCATCTGCTGGTAATGCAATCGGGGATGATAAGCAAGACAATACTGTGAACACTTTAAAAGAAGTACAGGACAATCCTAAAGAACTTAATCCAATTGCTGAGCAAATTTCAGTACACCCACATTGCAAACAGTCAGTGGAAAAACCGAATGAGAAAGAGATTGTGGTAAGTGATAATAAAGCAGCAGTTGCTTCTCTGAAGCAACAATCAACATTGCAGTCTCTACGTATACCAAAACAACCCAAATCTTCTTTGAAGCAAGTATTGCATGATTTAAATCTTTTAAAGATAAAAACAGGTAATCCTGTTCCTCTGGCAAAGCTTCATGAAGATGTGGGACGGTCTAGCTGTTCGGATTTCATTGACATTGATTCGGAATACAAAGATCCTCAGATGTGTACGGCCTATGTTACAGACATCTATGCAAATATGCGAATTGTAGAGCTAAAGAGACGGCCCTTGCCCAATTTTATGGAAACCACTCAGCGTGATATCAATGCAAACATGAGGAGTGTACTCATTGATTGGCTTGTTGAGGTATCAGAGGAGTACAAGCTTGTCCCAGACACACTTTATTTAACCGTATCTTATATTGACCGGTTCCTCTCTGCAAATGTAGTCAATAGACAAAGGCTACAGCTTTTAGGGGTTTCTTGCATGCTTGTTGCCTCGAAGTATGAAGAAATTTGTGCTCCTCCAGTAGAAGAATTTTGCTATATTACCGATAATACCTACAAAAAGGAAGAAGTGTTGGAAATGGAAATTAGTGTTTTGAACCGCTTGCAATATGATCTGACAACACCAACCACCAAGACCTTTCTCAGGCGTTTCATCCGAGCAGCTCAAGCATCATGTAAGGTTTCAAGCTTGCATTTGGAATTCATGGGTAACTATCTTGCAGAGCTAACACTTGTAGAATATGATTTTCTCAAGTATCTACCATCTCTAATAGCTGCAGCAGCTGTATTTGTGGCAAGAATGACCCTTGACCCTATGGTTCACCCTTGGAATTCTACTCTGCAACATTACACAGGTTATAAAGTATCAGACATGAGAGATTGTATTTGTGCCATACACGACTTGCAATTGAACAGAAAAGGTTGCACATTGGCTGCAATAAGGGAGAAGTACAACCAACCTAAGTTCAAATGTGTGGCGAACTTGTTTCCACCTCCAGTAATTTCTCCTCAGTTCCTCATAGATAATGAGGTGTAGTTGATTCTGAATATGTGGTACTCATCTTCATTTGGCTACATCTCAAATGGATGCAGATAGCTGTGTTTTTCAGATTTGTGAATTGGGAATTCATCACTGAAAAAGAATTCGTCCTAGTCCTTTAGGACATGTACTTATGTCTATGCAAGTGCTTCTTGCCTAAGCTATGTTGATACTTCACCTAAACTATGTTGATACTTACCTTTCCTTAGATAAGGTGCTTGGTTGATGCTGTCATATAAATGACCATGTCTACCATGCACAGAAATTTAAATATTTTTCTTGAAAAATCAAGATTATGACTATGGGTAACCACTCTTCACCTGTATTTTATCTGCAGAGCTAATCTGGAGGATCATTATCCATGAGAGTGGCCCATTCTGATTTTAAACAATGAACTTACCTGGTTTTCTATAACATCTTTAGTTAATATTGAAATCATGGCTTAAATGTGGC

Ace file of the UniGene sp_v3.0_unigene4097

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative A-like cyclin (Fragment) n=1 Tax=Picea abies RepID=Q9AVT0_PICAB	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Sma3	Cyclin A-like protein	-	-	7.843e-20	-

Source	Gene names
Sma3	At1g15570; At1g44110; At1g47210; At1g47220; At1g47230; At1g77390; At1g80370; At5g11300; At5g25380; At5g43080; CHLREDRAFT_147453; CYC3A; CYC3B; CYC3C; CYCA; CYCA1; CYCA1-1; CYCA1-2; CYCA1-3; CYCA1-4; CYCA2-1; CYCA2-2; CYCA2-3; CYCA2-4; CYCA3-1; CYCA3-2; CY

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-
Sma3	DNA endoreduplication	GO:0042023	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Mannosyltransferase, DXD	IPR007704	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin A, G2/mitotic-specific	IPR015453	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G11300.1	" CYC3B, CYC2BAT, CYCA2;2 mitotic-like cyclin 3B from Arabidopsis chr5:3601811-3604466 REVERSE LENGTH=436"	0.0	51%
RefSeq	Arabidopsis thaliana	NP_568248.2	cyclin-A2-2 [Arabidopsis thaliana]	0.0	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: your sequence is longer than subject: 531 - 465

Fln protein: MTGTQASNVRITRARAAKSTLNNALPPLPPAQGKPRGKRAATESNISGSGVAAEPLKRRAVLSDVSNICKEAAAVDCLKKPKAVKVVYQNANAKGRGRGIPRNNKKITQEAEIKKETSPAICNVDDASAGNAIGDDKQDNTVNTLKEVQDNPKELNPIAEQISVHPHCKQSVEKPNEKEIVVSDNKAAVASLKQQSTLQSLRIPKQPKSSLKQVLHDLNLLKIKTGNPVPLAKLHEDVGRSSCSDFIDIDSEYKDPQMCTAYVTDIYANMRIVELKRRPLPNFMETTQRDINANMRSVLIDWLVEVSEEYKLVPDTLYLTVSYIDRFLSANVVNRQRLQLLGVSCMLVASKYEEICAPPVEEFCYITDNTYKKEEVLEMEISVLNRLQYDLTTPTTKTFLRRFIRAAQASCKVSSLHLEFMGNYLAELTLVEYDFLKYLPSLIAAAAVFVARMTLDPMVHPWNSTLQHYTGYKVSDMRDCICAIHDLQLNRKGCTLAAIREKYNQPKFKCVANLFPPPVISPQFLIDNEV*

Protein Length: 532

Fln nts: AACACTGGCGACTCTTTACCGCAGTTCCGTTGGTCCTACTGACATTAGATCGAATAGATCGAACAGGCTGATCGGCCATGGTGATCCTTTGGGCGGGCTGCAAGAACTGGTAAACTTCCGCGGCTGGATCTCTGAATATTGCTGTTCGGTTTACACATATTCAAAGGTGTAAAGTTGTGTTGTTCACAACTTTATTAAAATAACG_-_ATGACTGGAACCCAGGCATCCAATGTTCGCATTACACGGGCGAGGGCTGCAAAGTCCACGTTGAACAATGCCCTTCCTCCTCTTCCGCCAGCCCAAGGTAAACCGAGAGGGAAACGTGCAGCAACGGAGTCAAATATTTCCGGATCCGGTGTTGCTGCTGAACCCCTTAAACGACGTGCAGTGTTATCAGATGTGTCCAATATCTGTAAGGAAGCGGCCGCGGTTGATTGCTTGAAAAAACCAAAAGCAGTTAAGGTTGTATATCAGAATGCCAATGCCAAGGGAAGAGGCCGAGGAATTCCTCGGAATAACAAGAAGATTACTCAAGAGGCAGAGATTAAAAAAGAGACCTCACCAGCTATTTGTAATGTTGACGATGCATCTGCTGGTAATGCAATCGGGGATGATAAGCAAGACAATACTGTGAACACTTTAAAAGAAGTACAGGACAATCCTAAAGAACTTAATCCAATTGCTGAGCAAATTTCAGTACACCCACATTGCAAACAGTCAGTGGAAAAACCGAATGAGAAAGAGATTGTGGTAAGTGATAATAAAGCAGCAGTTGCTTCTCTGAAGCAACAATCAACATTGCAGTCTCTACGTATACCAAAACAACCCAAATCTTCTTTGAAGCAAGTATTGCATGATTTAAATCTTTTAAAGATAAAAACAGGTAATCCTGTTCCTCTGGCAAAGCTTCATGAAGATGTGGGACGGTCTAGCTGTTCGGATTTCATTGACATTGATTCGGAATACAAAGATCCTCAGATGTGTACGGCCTATGTTACAGACATCTATGCAAATATGCGAATTGTAGAGCTAAAGAGACGGCCCTTGCCCAATTTTATGGAAACCACTCAGCGTGATATCAATGCAAACATGAGGAGTGTACTCATTGATTGGCTTGTTGAGGTATCAGAGGAGTACAAGCTTGTCCCAGACACACTTTATTTAACCGTATCTTATATTGACCGGTTCCTCTCTGCAAATGTAGTCAATAGACAAAGGCTACAGCTTTTAGGGGTTTCTTGCATGCTTGTTGCCTCGAAGTATGAAGAAATTTGTGCTCCTCCAGTAGAAGAATTTTGCTATATTACCGATAATACCTACAAAAAGGAAGAAGTGTTGGAAATGGAAATTAGTGTTTTGAACCGCTTGCAATATGATCTGACAACACCAACCACCAAGACCTTTCTCAGGCGTTTCATCCGAGCAGCTCAAGCATCATGTAAGGTTTCAAGCTTGCATTTGGAATTCATGGGTAACTATCTTGCAGAGCTAACACTTGTAGAATATGATTTTCTCAAGTATCTACCATCTCTAATAGCTGCAGCAGCTGTATTTGTGGCAAGAATGACCCTTGACCCTATGGTTCACCCTTGGAATTCTACTCTGCAACATTACACAGGTTATAAAGTATCAGACATGAGAGATTGTATTTGTGCCATACACGACTTGCAATTGAACAGAAAAGGTTGCACATTGGCTGCAATAAGGGAGAAGTACAACCAACCTAAGTTCAAATGTGTGGCGAACTTGTTTCCACCTCCAGTAATTTCTCCTCAGTTCCTCATAGATAATGAGGTGTAG___TTGATTCTGAATATGTGGTACTCATCTTCATTTGGCTACATCTCAAATGGATGCAGATAGCTGTGTTTTTCAGATTTGTGAATTGGGAATTCATCACTGAAAAAGAATTCGTCCTAGTCCTTTAGGACATGTACTTATGTCTATGCAAGTGCTTCTTGCCTAAGCTATGTTGATACTTCACCTAAACTATGTTGATACTTACCTTTCCTTAGATAAGGTGCTTGGTTGATGCTGTCATATAAATGACCATGTCTACCATGCACAGAAATTTAAATATTTTTCTTGAAAAATCAAGATTATGACTATGGGTAACCACTCTTCACCTGTATTTTATCTGCAGAGCTAATCTGGAGGATCATTATCCATGAGAGTGGCCCATTCTGATTTTAAACAATGAACTTACCTGGTTTTCTATAACATCTTTAGTTAATATTGAAATCATGGCTTAAATGTGGC

Fln Alignment:

Contig4097___SGSGVAAEPLKRRAVLSDVSNICKEAAAVDCLKKPKAVKVVYQNANAKGRGRGIPR------NNKKITQEAEIKKETSPAICNVDDASAGNAIGDDKQDNTVNTLKEVQDNPKELNPIAEQISVHPHCKQSVEKPNEKEIVVSDNKAAVASLKQQSTLQSLRIPKQPKSSLKQVLHDLNLLKIKTGNPVPLAKLHEDVGRSSCSDFIDIDSEYKDPQMCTA-YVTDIYANMRIVELKRRPLPNFMETTQRDINANMRSVLIDWLVEVSEEYKLVPDTLYLTVSYIDRFLSANVVNRQRLQLLGVSCMLVASKYEEICAPPVEEFCYITDNTYKKEEVLEMEISVLNRLQYDLTTPTTKTFLRRFIRAAQASCKVSSLHLEFMGNYLAELTLVEYDFLKYLPSLIAAAAVFVARMTLDPMVHPWNSTLQHYTGYKVSDMRDCICAIHDLQLNRKGCTLAAIREKYNQPKFKCVANLFP
D5AC16______________AGVNVTKEGVNGRKPLAQVSRPITRSFGAQLIAQAAANKGIFAANNQTQAPVVIPKAEVVRANNQRRTRKSK-------------DIPPTTAVPEDKSDDCV-----IIEQPHRIKPA---------CNRNAGAAGNKE------KPRLVTAKPRSLTASLT------SRTAVALHDFGF--------------DDEMPEAEEDPLPNIDGGDLDNQLAVVEYVEGIYKFYRRTE-HMSCVPDYMPR-QRDINGKMRAILINWLIEVHYRFGLMPETLYLTINLLDRYLSIQRVSRNNFQLVGTTAMLLASKYEEIWAPKVDEFLDILENNYERKHVLVMEKEMLNKLKFHLTVPTPYVFLVRFLKAAGSDEEMANLVF-----FLTELSLMQYVMIKFPPSMLAAAAVYTARCTLQKM-PVWSHVLKAHSGYSETDLKECVKLMVAFHQSSEESKLNTVIKKYSTPEYNSVAFIKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain