SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4083

Length: 2555 nt

UniGene Fasta

>sp_v3.0_unigene4083
ACTTTTGTAAGTCTCCAAATAATGGGCAGTTCATGCTTAGGTGTTCTTCGTACTTACCTTTTAAATAGTCTCCTTAGGCCATGAAGGAACCAATACTCTGGGAGTGGAAAGTAAAGCATATGCACTGGTTTCTGGCAGAAATGCAGGCAGACAACATCATACTGTTATCGCACACATTAGGTAGTGTCCGTGGCAGAAAAAGCGACTAATCAAGTCGAAGAAGGTCTTTCATAGGAAGGTTGGAGGAGGCAGAGCGGGAGGTTTATAATATAATCAATCGTTCTATTCTACTTGAAATGGTGGTGGCGATTGTGGTGGTATAATTAGTTTCAGAATAACATGGACGAGAATGACAGGCAATCTGAGATTTCCGAGATTGAACCTCTTTCCCCATCTGAACAACAATGCGAAGACACAAAACTAGATGCCCACCAAAACCCTGGGAGTAAATCAGAGGAAACCCTGAGAAATAGGAGGCGGCATATTCCCTCCTCCAATGGAACAAATGCATCTGAAAATGGAGATGAGAACCCCTCCATGGAAGTAAAGAATGAGGGCACCTCCCCTAATGTTTTCATGTTCTGGGCATGCTTTGTGGGCATAGTCTCGTTGATTACTCTATTCTTTGTGTTAACTTCTTCTTTTGCCGGTCCAGAGAACGAGAAAGCAGAATTCTTAAGCATGCCACCTGATTTACGCTCACATTATTTTAAGGGCAAAATGGTCAAAGTCCAGATTGGGGCAGAAGAGAAGCAATCAATCCAAGTATTTGTGAGACAAGAAGGTCCCAGAGACGCTGAAACGGTGCTTTTAGTTCATGGTTTTGGGGCAAGCTCATTCTCATTTCGTGACGTCATATCAATCCTGGCTTCCAAGGGAATTCATGCTGTTGCACTGGATCTACCGGGCTTTGGTTTCTCGGACAAGTCCAGCTTACAGACTGATAGAAGATGGGGTGGTTTGATTGGGAGGGTTAAGGATGTGTTTCTTGACATAAAGGAGAAAGGGCTGTTCTGGGGATTCGATCAGCTGGTGGAGACCGGGGAGATGCCTTATGTGCAGTATGAACCTAGAGTGACTAAAAGCTACCAGGCTTTGCAATGCGCGCCACAAGAATTGAGCCAAAGCTTGAAACAGGTAATTGACTCCTTATCTCTTGGGCCTGTTCATTTAGTAGTCCATGACACAGGATTTGAGACTGGTGCCATTTGGGCTGCAAGCAATCCTTCTTTCGTTCGAAGTATTACTCTCATTGATGCTGCCCCACACAATCCATCTGTACCCTCGTGGGTTCTGAAGGTGCCAGGAGTGGGGGAGTTAGTGACCCATTTTCCCTTACTTCAATTGGGTCTCCTGAGAATGTGTTGTTCAAAGTTCATGGATAGATCTGCTGCAGAGGCCCATGGGATTCTCTTGAGGACTAAGAATGGCAGGAGGGCTTCTGTGGAGATCGGAAACCGGGCAAATGCAAGCTTTGACTTGAAGTCTTGGGCAGACGCTGATAGTGTGAAAGAAGTGCCTATGCAAATACTGTGGGGCAATGATTGGTCCAAGGACTGGCAGAGGGAGGGAGACCAGATCGCCAAGGTGCTTCCTCGTGCAGTTTTTGTCTCCCACAGTGGTGGAAGATGGCCTCAGGAAGATGTAGCCAAAGAAATTGCAGAAGCACTTGCAAGCTTTATATCTTCCTTTCCCCCTACTGCCAGGACTGTTACGGAAGAGGCTTTGCCAGAGCATATACAGAAAATGTTTGATGAGGTTGGTGGTGACCATCATCACAGTCATTCCGATTTACATAACCATATTCACACCCATCAACATGGTCATGATCATGGAGACCATGGGCACAGTCATGGTGCTGCATATATGGATGGATATGGTCTTGGACATGGTGGCTGGCACTAAATACTCTTGGCTAAGATATTTTTTGAGGCTGATGTGTTGCATACCATAGCCTCACGTAGTTGTTTTAAGTGTGCTCACATAGTGCTAAAGTGGACATATCCGGTGCATTGACCACCACGATTCTCCCATCTTATGCAAAATTAGCCTCCATAAGGTGTTTATAGTAAGTTACACTGTTATGCTGTCAATGTACAGAAGGAGATGGTGCTATATACATGTTAGTTATTTTAATGAGACTTATACATCGTAACGGGTTGAGTTAGCAATTTCAAATCTGCACATTTAACGATACTCAACAATTTGAAATCTTATGAAGTCATTTAACCCAGTCCTCAATAGAATTTTTGTGTAATCTAGTGAGGTTGCAACACCCGATTGTAAAAACCATCTGAATGGTGCATGGCGGTTAATTCTGAGGCAAATACTAGTGTGCCTTTTTAGACATAGTTTCTTTGTGTTTGTCTAGTTATAGTGGATTGTGTATTTGATACGGTTAATTTCTTTGTGTTTGTCTAGTTATAGTGGATTGTGTATTTGATACGGTTCAGACATTTGGAAGTAATCATTAATGTTATTGAACAAGATTCCATACAAAAGTTTTAGATAGGATTCCAGGTCCAATGATGTAGCATGGCTGGCAAGCTATGAGA

Ace file of the UniGene sp_v3.0_unigene4083

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein AUXIN RESPONSE 4 n=2 Tax=Arabidopsis RepID=AXR4_ARATH	-	-	0.0	42%
FL-Next	sp=Protein AUXIN RESPONSE 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%

Source	Gene names
Sma3	AXR4; At1g54990; F14C21.51; GSVIVT00022803001; POPTRDRAFT_729591; RCOM_1431640; T24C10.10;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FZ33

Fln msg: your sequence is longer than subject: 522 - 473

Fln protein: MDENDRQSEISEIEPLSPSEQQCEDTKLDAHQNPGSKSEETLRNRRRHIPSSNGTNASENGDENPSMEVKNEGTSPNVFMFWACFVGIVSLITLFFVLTSSFAGPENEKAEFLSMPPDLRSHYFKGKMVKVQIGAEEKQSIQVFVRQEGPRDAETVLLVHGFGASSFSFRDVISILASKGIHAVALDLPGFGFSDKSSLQTDRRWGGLIGRVKDVFLDIKEKGLFWGFDQLVETGEMPYVQYEPRVTKSYQALQCAPQELSQSLKQVIDSLSLGPVHLVVHDTGFETGAIWAASNPSFVRSITLIDAAPHNPSVPSWVLKVPGVGELVTHFPLLQLGLLRMCCSKFMDRSAAEAHGILLRTKNGRRASVEIGNRANASFDLKSWADADSVKEVPMQILWGNDWSKDWQREGDQIAKVLPRAVFVSHSGGRWPQEDVAKEIAEALASFISSFPPTARTVTEEALPEHIQKMFDEVGGDHHHSHSDLHNHIHTHQHGHDHGDHGHSHGAAYMDGYGLGHGGWH*

Protein Length: 523

Fln nts: ACTTTTGTAAGTCTCCAAATAATGGGCAGTTCATGCTTAGGTGTTCTTCGTACTTACCTTTTAAATAGTCTCCTTAGGCCATGAAGGAACCAATACTCTGGGAGTGGAAAGTAAAGCATATGCACTGGTTTCTGGCAGAAATGCAGGCAGACAACATCATACTGTTATCGCACACATTAGGTAGTGTCCGTGGCAGAAAAAGCGACTAATCAAGTCGAAGAAGGTCTTTCATAGGAAGGTTGGAGGAGGCAGAGCGGGAGGTTTATAATATAATCAATCGTTCTATTCTACTTGAAATGGTGGTGGCGATTGTGGTGGTATAATTAGTTTCAGAATAAC_-_ATGGACGAGAATGACAGGCAATCTGAGATTTCCGAGATTGAACCTCTTTCCCCATCTGAACAACAATGCGAAGACACAAAACTAGATGCCCACCAAAACCCTGGGAGTAAATCAGAGGAAACCCTGAGAAATAGGAGGCGGCATATTCCCTCCTCCAATGGAACAAATGCATCTGAAAATGGAGATGAGAACCCCTCCATGGAAGTAAAGAATGAGGGCACCTCCCCTAATGTTTTCATGTTCTGGGCATGCTTTGTGGGCATAGTCTCGTTGATTACTCTATTCTTTGTGTTAACTTCTTCTTTTGCCGGTCCAGAGAACGAGAAAGCAGAATTCTTAAGCATGCCACCTGATTTACGCTCACATTATTTTAAGGGCAAAATGGTCAAAGTCCAGATTGGGGCAGAAGAGAAGCAATCAATCCAAGTATTTGTGAGACAAGAAGGTCCCAGAGACGCTGAAACGGTGCTTTTAGTTCATGGTTTTGGGGCAAGCTCATTCTCATTTCGTGACGTCATATCAATCCTGGCTTCCAAGGGAATTCATGCTGTTGCACTGGATCTACCGGGCTTTGGTTTCTCGGACAAGTCCAGCTTACAGACTGATAGAAGATGGGGTGGTTTGATTGGGAGGGTTAAGGATGTGTTTCTTGACATAAAGGAGAAAGGGCTGTTCTGGGGATTCGATCAGCTGGTGGAGACCGGGGAGATGCCTTATGTGCAGTATGAACCTAGAGTGACTAAAAGCTACCAGGCTTTGCAATGCGCGCCACAAGAATTGAGCCAAAGCTTGAAACAGGTAATTGACTCCTTATCTCTTGGGCCTGTTCATTTAGTAGTCCATGACACAGGATTTGAGACTGGTGCCATTTGGGCTGCAAGCAATCCTTCTTTCGTTCGAAGTATTACTCTCATTGATGCTGCCCCACACAATCCATCTGTACCCTCGTGGGTTCTGAAGGTGCCAGGAGTGGGGGAGTTAGTGACCCATTTTCCCTTACTTCAATTGGGTCTCCTGAGAATGTGTTGTTCAAAGTTCATGGATAGATCTGCTGCAGAGGCCCATGGGATTCTCTTGAGGACTAAGAATGGCAGGAGGGCTTCTGTGGAGATCGGAAACCGGGCAAATGCAAGCTTTGACTTGAAGTCTTGGGCAGACGCTGATAGTGTGAAAGAAGTGCCTATGCAAATACTGTGGGGCAATGATTGGTCCAAGGACTGGCAGAGGGAGGGAGACCAGATCGCCAAGGTGCTTCCTCGTGCAGTTTTTGTCTCCCACAGTGGTGGAAGATGGCCTCAGGAAGATGTAGCCAAAGAAATTGCAGAAGCACTTGCAAGCTTTATATCTTCCTTTCCCCCTACTGCCAGGACTGTTACGGAAGAGGCTTTGCCAGAGCATATACAGAAAATGTTTGATGAGGTTGGTGGTGACCATCATCACAGTCATTCCGATTTACATAACCATATTCACACCCATCAACATGGTCATGATCATGGAGACCATGGGCACAGTCATGGTGCTGCATATATGGATGGATATGGTCTTGGACATGGTGGCTGGCACTAA___ATACTCTTGGCTAAGATATTTTTTGAGGCTGATGTGTTGCATACCATAGCCTCACGTAGTTGTTTTAAGTGTGCTCACATAGTGCTAAAGTGGACATATCCGGTGCATTGACCACCACGATTCTCCCATCTTATGCAAAATTAGCCTCCATAAGGTGTTTATAGTAAGTTACACTGTTATGCTGTCAATGTACAGAAGGAGATGGTGCTATATACATGTTAGTTATTTTAATGAGACTTATACATCGTAACGGGTTGAGTTAGCAATTTCAAATCTGCACATTTAACGATACTCAACAATTTGAAATCTTATGAAGTCATTTAACCCAGTCCTCAATAGAATTTTTGTGTAATCTAGTGAGGTTGCAACACCCGATTGTAAAAACCATCTGAATGGTGCATGGCGGTTAATTCTGAGGCAAATACTAGTGTGCCTTTTTAGACATAGTTTCTTTGTGTTTGTCTAGTTATAGTGGATTGTGTATTTGATACGGTTAATTTCTTTGTGTTTGTCTAGTTATAGTGGATTGTGTATTTGATACGGTTCAGACATTTGGAAGTAATCATTAATGTTATTGAACAAGATTCCATACAAAAGTTTTAGATAGGATTCCAGGTCCAATGATGTAGCATGGCTGGCAAGCTATGAGA

Fln Alignment:

Contig4083___NRRRHIPSSNGTNASENGDENPSMEVKNEGTSPNVFMFWACFVGIVSLITLFFVLTSSFAGPENEKAEFLSMPPDLRSHYFKGKMVKVQIGAEEKQSIQVFVRQEGPRDAETVLLVHGFGASSFSFRDVISILASKGIHAVALDLPGFGFSDKSSLQTDR-RWGGLIGRVKDVFLDIKEKGLFWGFDQLVETGEMPY---VQYEPRVTKSYQALQCAPQELSQSLKQVIDSLSLGPVHLVVHDTGFETGAIWAASNPSFVRSITLIDAAPHNPSVPSWVLKVPGVGELVTHFPLLQLGLLRMCCSKFMDRSAAEAHGILLRTKNGRRASVEIGNRANASFDLKSWADADSVKEVPMQILWGNDWSKDWQREGDQIAKVLPRAVFVSHSGGRWPQEDVAKEIAEALASFISSFPPTARTVTEEALPEHIQKMFDE
Q9FZ33______________NPPKNKPKDSDFTKSESTMKNPKPQ------SQNPFPFWFYFTVVVSLATIIFISLSLFSSQNDPRSWFLSLPPALRQHYSNGRTIKVQVNSNESP-IEVFVAESGSIHTETVVIVHGLGLSSFAFKEMIQSLGSKGIHSVAIDLPGNGFSDKSMVVIGGDREIGFVARVKEVYGLIQEKGVFWAFDQMIETGDLPYEEIIKLQNSKRRSFKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALGLASNWVSENWQSVRSVTLIDSSI-SPALPLWVLNVPGIREILLAFSFGFEKLVSFRCSKEMTLSDIDAHRILLKGRNGREAVVASLNKLNHSFDIAQWGNSDGINGIPMQVIWSSEASKEWSDEGQRVAKALPKAKFVTHSGSRWPQESKSGELADYISEFVSLLPKSIRRVAEEPIPEEVQKVLEE

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
292	66		33		0.997452
293		33	33	33	0.997753
294			33	66	1.0
295			33	66	1.0
384		50		50	1.0
413	50			50	1.0
451	40		60		1.0
455	80		20		0.995493
537	14		14	71	0.984337
538	14	85			0.993533
539		85		14	0.993533
540	85		14		0.993533
609	11			88	0.923564
610		88		11	0.923564
612			11	88	0.923564
613			11	88	0.923564
1083	77			11	0.968132
1527		85		14	0.999981
2060	22		77		0.999999
2081		88		11	0.923564
2112	11		88		0.923564
2113		11		88	0.923564
2114	11		88		0.923564
2115		88		11	0.923564
2145		10		90	0.90298
2195		10	90		0.90298
2234		11		88	0.923564
2254	12		87		0.992554
2255		12		87	0.992554
2256	12		87		0.992554
2258	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain