SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4066

Length: 1966 nt

UniGene Fasta

>sp_v3.0_unigene4066
CGGACCTCTAGTGCAAATTCACGAGGTGAGAACGTAGGTGCTACTAAATTCGGTTTCGAACCAGATCTTGGCCAGCTCAAAGTTGGATCCATTCTGACTATCACAGTAATGGCGATCATACTTATTCAGTACTTCTTTTCAAGAATGGAATTTGTCAATTGATAAGCACGCTTTAGATCTGTTCGTCGGTGCTCGAGGGTTCACTGTCTTCTAACATGGGAGGATCTTCTTGGCCCTCTGCTGCAGAGGTTGAGAGAGTTAGAAGGTCGGCAGCTGCTTTGGCAGGATGCGATGTAGAAAAAGTAAGAATGGTCGCCTCTCCATACAGAATCTGTCCTCTTGGCGCTCACATTGACCATCAGGGTGGGACTGTGACGGCAATGACAATAAATAGGGGCATACTTTTAGGTTTTGTACCCTCAGGAGACTGCAAGGTTTTGCTCCACTCTGGTCAGTTTGGTGGAGAAGTGCAGTTCAGAATTGACATTGATCTATGCAAAGGAGATCAAATTGGTGTAGATGAAGAATGTGGATGGGGGCGCTATGCAAGAGGCGCTGCATTTGCTCTAAAAAGGGCGGGTAAACATTTATATCAGGGTATTATCGGGTTTATTGAGGGATCAGGATCTTTTGATAGTTCAGGCATTAGCTCTTCGGCTGCAGTTGGGGTTGCATATCTGTTGGCCTTTGAAAGTGCAAATGATTTGATGATTTCTCAATTAGAAAATATTGAGTTGGATAGGTTGATTGAGAATGAGTATATGGGTATAAATAATGGTGTTTTGGATCAATCAGCAATCCTGCTTTCTGAACGTAATTGCCTCACATGCATCGACTGCAAGAGCAAGGAGTACAAGCTCATACATTCTCCCAAATTCAATGACAGCATCCAATGCCAAGTTTCAGAGTCATATAAAATATTACTGGCATTTTCAGGCTTGAGACATTCATTGCCAAGTACACCAGGGTATAATTCAAGAGTAGCCGAATGCAAAGAAGCTGCCAGGATTTTGCTGACAGCATCTGGAAAAGCTTTCACGGAACCTCTTTTGTGCAATGTAGCACCAGAGGACTATATACTTCACAAGGAAAAGTTAGAAGGTGCTTTTGCTCGAAGATCAGAGCACTATTTCTCAGAGAATAAAAGAGTTTTTGCAGGGCTTAAATCATGGTCCAGTGGAAATTTGGAAGAATTTGGAAAGTTGATGTCAGAGTCTGGATTGAGTTCCATTCAGAACTATGAATGTGGTTGCGAACCATTAATACAACTTTATCACATTCTTTTGAAGGCACCAGGTGTGTATGGTGCACGCTTTAGTGGGGCGGGATTTCGAGGTTGTTGTGTGGCTTTTGTTAGTGCCAAACTTGCAGAAGATGCTGCCTTGTTTGTTCGTGAAGAGTATAAAAAGGTCCAACCAAAATTATTTTCACAAGCAGGCAATGTTGTCTTAATTTGTGAAACAGGAGATAAAGCCTGCATTATTTGATTCATAGCCTTAACTATGGCCTTCATGCTTTCATGTATTTTACTGGAAACTATTGTTTTTTATGTAAAATTTTGTGGCGTACAATATTTTACGTCCACGAGTTCATTCTAAGTTATTTTATCAGATGAACTCCAAACTTTGGGTAACAAGTCTTTCAAAACTCGGAAGATAAATTATTGAATTGCAACTATTCAGATCCACCTTTTTGGTAGTGCATTACGAAAATACTTGCACGGCCCGTCCTTATGAAAAGGGAGAAGCGTTAAACGATCGATTTACATATTGGTAAATCCATTTGAGGTGTATCTATATATGTTCCTTATGGCCAGCTGAGAGATTAGGATGAGTTGGTTCTCCAAGTGATCTGGAGAAGTCGATGTAATAATGGGTCATACTTATGGTTTCTGTTTGTGTTTCTGAGGAAGCCAATTGTTGCAAGACTTTATGCTTATTTGTTGATCAAGTTCTTTTAGAAAAGT

Ace file of the UniGene sp_v3.0_unigene4066

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	galactokinase [Arabidopsis thaliana] sp\|Q8VYG2.1\|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gb\|AAL59925.1\| putative galactokinase [Arabidopsis thaliana] gb\|AAM20366.1\| putative galactokinase [Arabidopsis thal	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Galactokinase	IPR000705	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10700.1	GalAK galacturonic acid kinase chr3:3346789-3350863 REVERSE LENGTH=424	58%
RefSeq	Arabidopsis thaliana	NP_187681.2	galactokinase [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002308990.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS15

Fln msg:

Fln protein: MGGSSWPSAAEVERVRRSAAALAGCDVEKVRMVASPYRICPLGAHIDHQGGTVTAMTINRGILLGFVPSGDCKVLLHSGQFGGEVQFRIDIDLCKGDQIGVDEECGWGRYARGAAFALKRAGKHLYQGIIGFIEGSGSFDSSGISSSAAVGVAYLLAFESANDLMISQLENIELDRLIENEYMGINNGVLDQSAILLSERNCLTCIDCKSKEYKLIHSPKFNDSIQCQVSESYKILLAFSGLRHSLPSTPGYNSRVAECKEAARILLTASGKAFTEPLLCNVAPEDYILHKEKLEGAFARRSEHYFSENKRVFAGLKSWSSGNLEEFGKLMSESGLSSIQNYECGCEPLIQLYHILLKAPGVYGARFSGAGFRGCCVAFVSAKLAEDAALFVREEYKKVQPKLFSQAGNVVLICETGDKACII*

Protein Length: 425

Fln nts: CGGACCTCTAGTGCAAATTCACGAGGTGAGAACGTAGGTGCTACTAAATTCGGTTTCGAACCAGATCTTGGCCAGCTCAAAGTTGGATCCATTCTGACTATCACAGTAATGGCGATCATACTTATTCAGTACTTCTTTTCAAGAATGGAATTTGTCAATTGATAAGCACGCTTTAGATCTGTTCGTCGGTGCTCGAGGGTTCACTGTCTTCTAAC_-_ATGGGAGGATCTTCTTGGCCCTCTGCTGCAGAGGTTGAGAGAGTTAGAAGGTCGGCAGCTGCTTTGGCAGGATGCGATGTAGAAAAAGTAAGAATGGTCGCCTCTCCATACAGAATCTGTCCTCTTGGCGCTCACATTGACCATCAGGGTGGGACTGTGACGGCAATGACAATAAATAGGGGCATACTTTTAGGTTTTGTACCCTCAGGAGACTGCAAGGTTTTGCTCCACTCTGGTCAGTTTGGTGGAGAAGTGCAGTTCAGAATTGACATTGATCTATGCAAAGGAGATCAAATTGGTGTAGATGAAGAATGTGGATGGGGGCGCTATGCAAGAGGCGCTGCATTTGCTCTAAAAAGGGCGGGTAAACATTTATATCAGGGTATTATCGGGTTTATTGAGGGATCAGGATCTTTTGATAGTTCAGGCATTAGCTCTTCGGCTGCAGTTGGGGTTGCATATCTGTTGGCCTTTGAAAGTGCAAATGATTTGATGATTTCTCAATTAGAAAATATTGAGTTGGATAGGTTGATTGAGAATGAGTATATGGGTATAAATAATGGTGTTTTGGATCAATCAGCAATCCTGCTTTCTGAACGTAATTGCCTCACATGCATCGACTGCAAGAGCAAGGAGTACAAGCTCATACATTCTCCCAAATTCAATGACAGCATCCAATGCCAAGTTTCAGAGTCATATAAAATATTACTGGCATTTTCAGGCTTGAGACATTCATTGCCAAGTACACCAGGGTATAATTCAAGAGTAGCCGAATGCAAAGAAGCTGCCAGGATTTTGCTGACAGCATCTGGAAAAGCTTTCACGGAACCTCTTTTGTGCAATGTAGCACCAGAGGACTATATACTTCACAAGGAAAAGTTAGAAGGTGCTTTTGCTCGAAGATCAGAGCACTATTTCTCAGAGAATAAAAGAGTTTTTGCAGGGCTTAAATCATGGTCCAGTGGAAATTTGGAAGAATTTGGAAAGTTGATGTCAGAGTCTGGATTGAGTTCCATTCAGAACTATGAATGTGGTTGCGAACCATTAATACAACTTTATCACATTCTTTTGAAGGCACCAGGTGTGTATGGTGCACGCTTTAGTGGGGCGGGATTTCGAGGTTGTTGTGTGGCTTTTGTTAGTGCCAAACTTGCAGAAGATGCTGCCTTGTTTGTTCGTGAAGAGTATAAAAAGGTCCAACCAAAATTATTTTCACAAGCAGGCAATGTTGTCTTAATTTGTGAAACAGGAGATAAAGCCTGCATTATTTGA___TTCATAGCCTTAACTATGGCCTTCATGCTTTCATGTATTTTACTGGAAACTATTGTTTTTTATGTAAAATTTTGTGGCGTACAATATTTTACGTCCACGAGTTCATTCTAAGTTATTTTATCAGATGAACTCCAAACTTTGGGTAACAAGTCTTTCAAAACTCGGAAGATAAATTATTGAATTGCAACTATTCAGATCCACCTTTTTGGTAGTGCATTACGAAAATACTTGCACGGCCCGTCCTTATGAAAAGGGAGAAGCGTTAAACGATCGATTTACATATTGGTAAATCCATTTGAGGTGTATCTATATATGTTCCTTATGGCCAGCTGAGAGATTAGGATGAGTTGGTTCTCCAAGTGATCTGGAGAAGTCGATGTAATAATGGGTCATACTTATGGTTTCTGTTTGTGTTTCTGAGGAAGCCAATTGTTGCAAGACTTTATGCTTATTTGTTGATCAAGTTCTTTTAGAAAAGT

Fln Alignment:

Contig4066___MGGSSWPXXXXXXXXXXXXXXLAGCDVEKVRMVASPYRICPLGAHIDHQGGTVTAMTINRGILLGFVPSGDCKVLLHSGQFGGEVQFRIDIDLCKGDQIGVDEECGWGRYARGAAFALKRAGKHLYQXXXXXXXXXXXXXXXXXXXXAAVGVAYLLAFESANDLMISQLENIELDRLIENEYMGINNGVLDQSAILLSERNCLTCIDCKSKEYKLIHSPKFNDSIQCQVSESYKILLAFSGLRHSLPSTPGYNSRVAECKEAARILLTASGKAFTEPLLCNVAPEDYILHKEKLEGAFARRSEHYFSENKRVFAGLKSWSSGNLEEFGKLMSESGLSSIQNYECGCEPLIQLYHILLKAPGVYGARFSGAGFRGCCVAFVSAKLAEDAALFVREEYKKVQPKLFSQAGNVVLICETGDKACII
B8LS15______________MGGSSWPSAAEVERVRRSAAALAGCDVEKVRMVASPYRICPLGAHIDHQGGTVTAMAINRGILLGFVPSEDCKVLLRSGQFGGEVQFRIDNDLCKGDQIGVDEECGWGRYARGAAFALQRAGKHLYQGIIGFIEGSGSFDSSGISSSAAVGVAYLLAFESANDLTISQLENIELDRLIENEYMGINNGVLDQSAILLSQRNCLTCIDCKTKEYKLIHPPKVNDNSQWQEPESYKILLAFSGLRHSLPSTPGYNSRVAECKEAARILLTASGKTFMELLLCNVAPEDYILHKEKLEGALARRSEHYFSENKRVFAGLESWSSGNLEEFGKLMSESGLSSIQNYECGCEPLIQLYHILLKAPGVYGARFSGAGFRGCCVAFVDANFAEDAALFVREEYKKVQPKLFSQAGTVVLICETGDKACII

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
416	66	33			0.997452
1410	20		80		0.995493
1475		87		12	0.999964
1547	14			85	0.993533
1548		14		85	0.993533
1569		66		33	1.0
1606		16		83	0.994512
1609		83		16	0.994512
1618		33		66	0.997452
1653	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain