SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3959

Length: 2947 nt

UniGene Fasta

>sp_v3.0_unigene3959
GAGAGTAACATTTGCAGTGCAGCGAAGGGAGGTGCGGGCAAGGTAAGGAAATTGGGTTACACGCTGCGCGCCCATTTCGCAAAGAAACACGGTGCGTGAGGTGGAGCCCCGACGACACTTGACTTGCCCTATCCAGCTCTTGACAGTGCGACTGTTTGTGTAATTTACATTGGTAATGGCGACGCCGTCTCTGAGGGAGTATCTGAAAAAACTATAGCTCCGATGAGAAACCAAAATCCAAATCAAATAATAAGAGGAAGAAGCCCCATAAATCCATGTCTGTTTCGGTAGCAAATAAGATCAACAATGCCTCTTCCGGCGTGCGCATCGTGGACGAGGATCCGCTATGGCAGACTGAAATTAAGGACGACTCCAACCAGGAGGATTCTCCAGATGAGAAACCTCAAGTCACAGAAGATGTAGAGGTGAAGCGGATGAAGCGATTGGAGCATTTGAAGATGCACCGGCCATATCTTACAGTTGCTGATGATGGCAGTGGATGGATTACTGTGTCTGAGACTAAGAAAACAGGCATACATTCAAATGATTCATCTCCAAAAAGGCAGAGCTCTGCGGATGTTCCACATGATAGGCATGTGCAATGTACTTATTCAGATCAAAGTTTATCTCCACCAAGGAGAGATCAAAGCAATATTCATAAAAGGGATTTATTACTGGTTAATAAACACACAAATTTTGAAAGCAGCAACCTCTCCCCAGAGTCAAACTATCATGAACCCCACCATTTGCTTCTGAAAGAGCATGAAGGTGGTGCCCTGAGTCCACTGCCACCGAGGAAAGTTCGACATGATTCTCCTGATCAATCTCCTCCAAGAGATGCGTGGACCAAGTCTCCAGATTTGTCACCCCCAAGAAAATGTCAAAAGGATACTTTCTTAGAAGGGAAGGATCGAACTCTATCTCCTGTTCTGCACAATGATTCTTTCCTGTCAAGGATGCCCCACTATGACACAATTGGAAGAAGAGGAGAACATCCAAGCACAAACAATTTTATTCCATCACCGCAAAGAAAGGTCCGTCATGATTCCCCTGACCTAACCCCCCCAAGAAAACCCTGGACCAAGTATCAAGATTTATCACCCCCAAGAAAGCCTCAGAATATTTCACCAAACAAAAGGGATACAAATGAATCTCCTACTTGGCATGATTCTCATTATTCATTACCAGCAAGAGTTTCAGACTATGAGGATCAGGATCTTTCCCCACCAAGTAGGACCCAGCAGCACTCAATTGGAAGAAGAGGGGATTTTCCAAGCAGACACAACCTTACTCCGTCACCAAAACGGAAGGCTAGACATGATTCCCCCGACCTTTCTCCTCCTAGAAAGGGCGATACCAAGATTCAAGATTTATCACCCCCAAGAAAGCCTCAAAAAGGTATTCTGACAAATAGGAAGGATCATAAAGAATCTCCGTTCCTATGCAATTCTCATTACTCAATACCAGCTAGAGTTTCAGAAAATGAGGATTGGAATTCTTTTCCACCAAGGAGTGCCTGGCATGACTCATTCGGAAAACAGGAAGATTCTCCAAATGGAAAAAGAGTTTTTCCACCCCCTGGCAAGGACCAGAGGGTGTCTTCAGATTTGTCACCCTCAAGGTATGAAAAGGATATTTCCTCACATAAAAAGGGTATAAAAGATCCCCCCATTTGTCATCATTCTCATTACTCATCTCCAGCAAGAACATCAAAAGATGATGAACAGGATTCTTCTCCACTGAGAAGGATACACCACAATTCTTCTGGAAGAACAGATGATTCTTCAACAAGAAAAAAATTATATCCTTCGACAAGAATGCCTGAACAAAGCTTGTCAGAGAGACATGTAATGGATAGGTTAAAATCAAAGGGTGAAATGACTGATGGGACTAATGCTGGCTTACGCACGGGGAGGGATCTTAAAGAGGAAATTGATCGAAAGAAAAGAGAGGAGTCCCAAAGATTCTCGAAGATGGATCCTTCTATAAGGGGGAGAGGCGCAGAGACTGTTTACCGTGACAAAGAAGGCAAAAGGCTAGAAGGTGTGGAAGAATTCTTGCATTTGCAGCAGGGAAAACCAAAACCTGAGGATAAGCCTTTGGAATGGGGTAAAGGTTTAACTCAGAAAAGGGAAGCAGAAGCTAGACAAGCTGCACTTGAGCTAGAAAAGGACAAGCCCTTTGCTCGAAGCAGAGATGATCCAGAACTTGACAAAATGTTGAAGGAGAGGGTTAGGTGGGGTGATCCCATGGCCCATTTGGTTAAGAGAAAAAATGTCGAACATGTACTTGAAAACCTAGCTGAGGATGAGAAGATAAGGGAATCTGGTTTTATCATTCCTCAAGATATACCAAGTCACAGTTGGCTGAAAAGAGGTGTTGATCCTCCAGCCAATCGTTATGGCATCAAACCAGGGAGACATTGGGATGGAGTTGATCGCAGCAATGGCTTTGAAAGAGGGTTATTTAAGAGGCAAAATGAAAAGCGGGCTACAGAAACGGAAGCTTATCTCTGGTCTGTAGCTGATATGTAATATGATACTTAATCTAAAATTGACCAGAAGATGATGAATTGCTCAAAGATGTATATTCTATAGGCATGCTGTTCAATCGTCTGATATTTGAGGCTTTGTTTCTCACTGAGCAATGTTGGAGCAACATGGACAGAATTCTCCGTTAGAAAGCTCATATTTTCCTCACCTTTGTATGGTTTGCTATTTCAGCATGAGGCTATTCGATTTTTAATATTTTTGTATCTCTGTTGGCACTCAATTCCCTTGTCTTGGATTCCAATTTCCAACGAACCTAATTATAGGTTTCACCAAGTGCATATTGTATTTGAAGCTTTTCTGTTTTCATTAAATGGTTTATCTTAATGTTGTCAGAACTGGATCAGTCATTGAACCAGTTGACCCAAAAAATGTGAACTGGACCTAGACCAGAAACC

Ace file of the UniGene sp_v3.0_unigene3959

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pre-mRNA-splicing factor CWC26 [Arabidopsis thaliana] ref\|NP_001031124.1\| pre-mRNA-splicing factor CWC26 [Arabidopsis thaliana] gb\|AAG50722.1\|AC079041_15 unknown protein [Arabidopsis thaliana] gb\|AAS49037.1\| At1g31870 [Arabidopsis thaliana] dbj\|BAH19458.1	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Bud13	IPR018609	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPZ8

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: KNYSSDEKPKSKSNNKRKKPHKSMSVSVANKINNASSGVRIVDEDPLWQTEIKDDSNQEDSPDEKPQVTEDVEVKRMKRLEHLKMHRPYLTVADDGSGWITVSETKKTGIHSNDSSPKRQSSADVPHDRHVQCTYSDQSLSPPRRDQSNIHKRDLLLVNKHTNFESSNLSPESNYHEPHHLLLKEHEGGALSPLPPRKVRHDSPDQSPPRDAWTKSPDLSPPRKCQKDTFLEGKDRTLSPVLHNDSFLSRMPHYDTIGRRGEHPSTNNFIPSPQRKVRHDSPDLTPPRKPWTKYQDLSPPRKPQNISPNKRDTNESPTWHDSHYSLPARVSDYEDQDLSPPSRTQQHSIGRRGDFPSRHNLTPSPKRKARHDSPDLSPPRKGDTKIQDLSPPRKPQKGILTNRKDHKESPFLCNSHYSIPARVSENEDWNSFPPRSAWHDSFGKQEDSPNGKRVFPPPGKDQRVSSDLSPSRYEKDISSHKKGIKDPPICHHSHYSSPARTSKDDEQDSSPLRRIHHNSSGRTDDSSTRKKLYPSTRMPEQSLSERHVMDRLKSKGEMTDGTNAGLRTGRDLKEEIDRKKREESQRFSKMDPSIRGRGAETVYRDKEGKRLEGVEEFLHLQQGKPKPEDKPLEWGKGLTQKREAEARQAALELEKDKPFARSRDDPELDKMLKERVRWGDPMAHLVKRKNVEHVLENLAEDEKIRESGFIIPQDIPSHSWLKRGVDPPANRYGIKPGRHWDGVDRSNGFERGLFKRQNEKRATETEAYLWSVADM*

Protein Length: 777

Fln nts: GAGAGTAACATTTGCAGTGCAGCGAAGGGAGGTGCGGGCAAGGTAAGGAAATTGGGTTACACGCTGCGCGCCCATTTCGCAAAGAAACACGGTGCGTGAGGTGGAGCCCCGACGACACTTGACTTGCCCTATCCAGCTCTTGACAGTGCGACTGTTTGTGTAATTTACATTGGTAATGGCGACGCCGTCTCTGAGGGAGTATCTGAAAAAACTATAGCTCCGATGAGAAACCAAAATCCAAATCAAATAATAAGAGGAAGAAGCCCCATAAATCCATGTCTGTTTCGGTAGCAAATAAGATCAACAATGCCTCTTCCGGCGTGCGCATCGTGGACGAGGATCCGCTATGGCAGACTGAAATTAAGGACGACTCCAACCAGGAGGATTCTCCAGATGAGAAACCTCAAGTCACAGAAGATGTAGAGGTGAAGCGGATGAAGCGATTGGAGCATTTGAAGATGCACCGGCCATATCTTACAGTTGCTGATGATGGCAGTGGATGGATTACTGTGTCTGAGACTAAGAAAACAGGCATACATTCAAATGATTCATCTCCAAAAAGGCAGAGCTCTGCGGATGTTCCACATGATAGGCATGTGCAATGTACTTATTCAGATCAAAGTTTATCTCCACCAAGGAGAGATCAAAGCAATATTCATAAAAGGGATTTATTACTGGTTAATAAACACACAAATTTTGAAAGCAGCAACCTCTCCCCAGAGTCAAACTATCATGAACCCCACCATTTGCTTCTGAAAGAGCATGAAGGTGGTGCCCTGAGTCCACTGCCACCGAGGAAAGTTCGACATGATTCTCCTGATCAATCTCCTCCAAGAGATGCGTGGACCAAGTCTCCAGATTTGTCACCCCCAAGAAAATGTCAAAAGGATACTTTCTTAGAAGGGAAGGATCGAACTCTATCTCCTGTTCTGCACAATGATTCTTTCCTGTCAAGGATGCCCCACTATGACACAATTGGAAGAAGAGGAGAACATCCAAGCACAAACAATTTTATTCCATCACCGCAAAGAAAGGTCCGTCATGATTCCCCTGACCTAACCCCCCCAAGAAAACCCTGGACCAAGTATCAAGATTTATCACCCCCAAGAAAGCCTCAGAATATTTCACCAAACAAAAGGGATACAAATGAATCTCCTACTTGGCATGATTCTCATTATTCATTACCAGCAAGAGTTTCAGACTATGAGGATCAGGATCTTTCCCCACCAAGTAGGACCCAGCAGCACTCAATTGGAAGAAGAGGGGATTTTCCAAGCAGACACAACCTTACTCCGTCACCAAAACGGAAGGCTAGACATGATTCCCCCGACCTTTCTCCTCCTAGAAAGGGCGATACCAAGATTCAAGATTTATCACCCCCAAGAAAGCCTCAAAAAGGTATTCTGACAAATAGGAAGGATCATAAAGAATCTCCGTTCCTATGCAATTCTCATTACTCAATACCAGCTAGAGTTTCAGAAAATGAGGATTGGAATTCTTTTCCACCAAGGAGTGCCTGGCATGACTCATTCGGAAAACAGGAAGATTCTCCAAATGGAAAAAGAGTTTTTCCACCCCCTGGCAAGGACCAGAGGGTGTCTTCAGATTTGTCACCCTCAAGGTATGAAAAGGATATTTCCTCACATAAAAAGGGTATAAAAGATCCCCCCATTTGTCATCATTCTCATTACTCATCTCCAGCAAGAACATCAAAAGATGATGAACAGGATTCTTCTCCACTGAGAAGGATACACCACAATTCTTCTGGAAGAACAGATGATTCTTCAACAAGAAAAAAATTATATCCTTCGACAAGAATGCCTGAACAAAGCTTGTCAGAGAGACATGTAATGGATAGGTTAAAATCAAAGGGTGAAATGACTGATGGGACTAATGCTGGCTTACGCACGGGGAGGGATCTTAAAGAGGAAATTGATCGAAAGAAAAGAGAGGAGTCCCAAAGATTCTCGAAGATGGATCCTTCTATAAGGGGGAGAGGCGCAGAGACTGTTTACCGTGACAAAGAAGGCAAAAGGCTAGAAGGTGTGGAAGAATTCTTGCATTTGCAGCAGGGAAAACCAAAACCTGAGGATAAGCCTTTGGAATGGGGTAAAGGTTTAACTCAGAAAAGGGAAGCAGAAGCTAGACAAGCTGCACTTGAGCTAGAAAAGGACAAGCCCTTTGCTCGAAGCAGAGATGATCCAGAACTTGACAAAATGTTGAAGGAGAGGGTTAGGTGGGGTGATCCCATGGCCCATTTGGTTAAGAGAAAAAATGTCGAACATGTACTTGAAAACCTAGCTGAGGATGAGAAGATAAGGGAATCTGGTTTTATCATTCCTCAAGATATACCAAGTCACAGTTGGCTGAAAAGAGGTGTTGATCCTCCAGCCAATCGTTATGGCATCAAACCAGGGAGACATTGGGATGGAGTTGATCGCAGCAATGGCTTTGAAAGAGGGTTATTTAAGAGGCAAAATGAAAAGCGGGCTACAGAAACGGAAGCTTATCTCTGGTCTGTAGCTGATATGTAA___TATGATACTTAATCTAAAATTGACCAGAAGATGATGAATTGCTCAAAGATGTATATTCTATAGGCATGCTGTTCAATCGTCTGATATTTGAGGCTTTGTTTCTCACTGAGCAATGTTGGAGCAACATGGACAGAATTCTCCGTTAGAAAGCTCATATTTTCCTCACCTTTGTATGGTTTGCTATTTCAGCATGAGGCTATTCGATTTTTAATATTTTTGTATCTCTGTTGGCACTCAATTCCCTTGTCTTGGATTCCAATTTCCAACGAACCTAATTATAGGTTTCACCAAGTGCATATTGTATTTGAAGCTTTTCTGTTTTCATTAAATGGTTTATCTTAATGTTGTCAGAACTGGATCAGTCATTGAACCAGTTGACCCAAAAAATGTGAACTGGACCTAGACCAGAAACC

Fln Alignment:

Contig3959___KNYSSDEXXXXXXXXXXXXXXXXMSVSVANKINNASSGVRIVDEDPLWQTEIKDDSNQEDSPDEKPQVTEDVEVKRMKRLEHLKMHRPYLTVADDGSGWITVSETKKTGIHSNDSSPKRQSSADVPHDRHVQCTYSDQSLSPPRRDQSNIHKRDLLLVNKHTNFESSNLSPESNYXXXXXXXXXXXXGGALSPLPPRKVRHDSPDQSPPRDAWTKSPDLSPPRKCQKDTFLEGKDRTLSPVLHNDSFLSRMPHYDTIGRRGEHPSTNNFIPSPQRKVRHDSPDLTPPRKPWTKYQDLSPPRKPQNISPNKRDTNESPTWHDSHYSLPARVSDYEDQDLSPPSRTQQHSIGRRGDFPSRHNLTPSPKRKARHDSPDLSPPRKGDTKIQDLSPPRKPQKGILTNRKDHKESPFLCNSHYSIPARVSENEDWNSFPPRSAWHDSFGKQEDSPNGKRVFPPPGKDQRVSSDLSPSRYEKDISSHKKGIKDPPICHHSHYSSPARTSKDDEQDSSPLRRIHHNSSGRTDDSSTRKKLYPSTRMPEQSLSERHVMDRLKSKGEMTDGTNAGLRTGRDLKEEIDRKKREESQRFSKMDPSIRGRGAETVYRDKEGKRLEGVEEFLHLQQGKPKPEDKPLEWGKGLTXXXXXXXXXXXXXXXXDKPFARSRDDPELDKMLKERVRWGDPMAHLVKRKNVEHVLENLAEDEKIRESGFIIPQDIPSHSWLKRGVDPPANRYGIKPGRHWDGVDRSNGFERGLFKRQNEKRATETEAYLWSVADM
B8LPZ8______________KKYSSDEKPKSKSNNKRKKPHKSISVSVANKINNASSGVRIVDEDPLWQTEIKDDSNQEDSPDEKPQVTEDVEVKRMKRLEHLTMHRPYLTVADDGSGWVTVSETKKAGIHSNDLSPERQSSVDVPHDRHVQCTYPDQSLSPPRRDQSNIHQRDLLPTNKRTNFESGNLSPDSNYHEPHHSLLQEHEGGAPNPLPPRKVRHDSPDLSPPRNAWTKSADLSPPRKCQKDTFLEVKDREESPALHNDSFLSRMPHHETIGRRGEYPNRNNFIPSPQRKVRHDSPDLTPPRKPWTKYQDLSPPRKPQNISPNKRDTNESSLRHDSRYSLPARVSEYEDRDPSPPSRTRQHSIGRRGDFPSRHNLTPSPKRKVRHDSPDLSPPRKADTKFQDLSPPRKTQKGILTNKRDHKESPFLRNSYYSIPARVSENEEQDSFPPRSAWHDSFGKQEDSSNGKRFIPPHGKGQRVSPDLSPSRYQKDISPHKKDIKDSSICHRSHYSSPGKTSKDDERDSSPLRRIHHSSSGRTDDSLTRKRMNPSTRMPEKSLSERHVMDRSRSKGEMTDGTNAGLRTGRDLKEEIDQKKREESHRFLQMDPSISGRGAETVYRDKQGKRLEGVEEFLHLQQGQPKPEDKPLEWGKGLTQKREAEARQAALELEKNKPFARSRDDPELDKMLKERVRWGDPMAHLVKRKNDEPVLENLAEDEKIRESGFIIPQDIPSHSWLKRGVDPPANRYGIKPGRHWDGVDRSNGFERGLFKRKNEKLATETEAYLWSVADM

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
2365	33			66	0.997452
2369		66	33		0.997452
2821	20			80	0.995493
2823	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain