SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3954

Length: 2800 nt

UniGene Fasta

>sp_v3.0_unigene3954
TACCCTTTTGATTGTTTCTTCCGTTTCAGCTATATGCCCATGGTCATTTTCTGCCTAGAATAAATATCTGTTATCCTTTTACAGAATTGCTGTGAGGGGTTGGGAGCATAGAAGTTCCCAAATATTTGGCCTTCGAAGGTTGAGTTCGTCATCACGCCTGTGAAAAATACGGGAAATCGATGACCCAAATTGTATTAGTGGAGGTGGAGAAATATAATTTGGTTTCTTGAGTGAAAACTATGGGAAAACCTGGTTTGGGCAAACTGCGAAAACACTTTCGCATACTGTATAATCTAGGGTTTGCTGTTCTGCTGTTTATTTTTATTTCTGACCGCAAAAACCTTGTGAAATCCCCTCTTTTCCTCGGTGGGGATTCTTCAAAAGCTTCTTTTAGATGGAGCTTGGAGAGCTTTGAATCCAACAGTGGCCCAAAAGCATCACATAAATGGATATTCAATAGAGATAATTCTGTTTTGGATATAGACCGCAGCAGGTCGAGAATTCTTATTCAAAACACATCAGAAGCAAGGCTTAATTTTTCAGGAATTTTGGCTAAAAGCCCAGCAGATAAACAACAACACTCTGTAACAGAAAACTCGTCAGAAACAGGCCTTGTGGTGCCCACTGGTTTGGAAACTGTGCAAAATGTTCAGTCTGGTTCTCTATGTGCAGGATTGAAAGAACACACAGGATATGGAAGCCAGTGTGAATTTATCAAAGCCAACAAGCAGTGCACATCCGGGGGATTTTTTGAGTACATATCATTTTTCTACTGCACATGTGAGAAATGGACCATCTTTGGCTATGTCATCCTAGCTCTCTGGCTCGTCGCGTTATTCTATATGTTGGGTAACACTGCGGCAGATTACTTTTGCTGTTCTTTAGAGAAATTGTCAAACCTTTTGAAGCTACCACCAACAGTGGCCGGAGTGACTCTTCTTCCTCTTGGAAATGGAGCACCTGATGTGTTTGCAAGTATTGCTGCTTTTATGGGGGCTGATGCTGGTGAGGTGGGACTCAATAGTGTTTTAGGAGGTGCAGTTTTTATTACCTGTGTAGTGGCTGGATTGGTTGCTCTATTCATTGCGGGTTCACGTGCACAGATTGATCGCCGAAGCTTTATACGGGATGTTTGTTTCTTCCTATTGACCCTTGCTTCGCTTTCTCTGATTCTGTTCGTTGGAAAGATTAATTTGTGGGGAGCACTGGCTTTTATTTCAATATACATCCTATATGCATTCACTCTTGCAGCAAATGAGTTTATGAGGAAACAAACCCGGAAGTTAAAGTGGGATTCAATGACACCCATGCAGTCTTTCCCTGGAAGTACTATTCCTCTCGGTTGTGAAGATGAAGATGATTCCATGTATAGTCCTCTGTTGGATTTAGAGTCAACTACAGGGTTGGCTGATGGTCATGGACGCTTGGAGACTTCATTGCCTCAATGGATGTGGGCTTCGAATGTAGCTATTTTCTCAAATCAGGGACTGTCAAAGACAGTAGAAGAGACTAGGCCTCTGTGGGGATGGAGTGAGGACAGCGAAAATTATCAAACAAGGTGTTCTTTATCTGGATTTCTACAGTGTCTTATCGAATGGCCATTGACAATACCAAGACAATTGACCATCCCTATAGTGGAAGATGAGCGATGGTCAAAAGGCATTGCAGTTGCATCTGTAACATTGTCACCAATTCTTTTGGCTCTGCTCTGGAATATTCAAGAAGTCAAGCCCTTGGGTATTGGCAAGGTAGCATATGTTATTGGAGGAATTTTGGGTGCTATATTTGGAACCGTTGGATATTTTACAACCAAGACAGAGCATCCTCCACGGACATTCTTGTTTCCTTGGGTTGTTGGAGGTTTCGTAATGAGTATAGTGTGGTTTTACATCATTGCAAATGAGCTGGTGGCTCTGTTGGTTTCCTTTGGTGTAATTTTTGAGATAAATCCATCAATCTTGGGCTTGACAGTGCTGGCCTGGGGGAATTCAATGGGTGATTTGATGTCAAATGTTGCTTTAGCATTGAATGGAGGAGATGGGGTTCAGATTGCAATGTCAGGATGCTATGCAGGACCTATGTTTAATACACTTGTTGGACTAGGAGTCCCTTTGTTGCTGGGATCCTGGTCCAAGCGACCTGCTGCCTATATTGTTCCAAAAGATACCAGTTTGTTTTACACCCTGGGATTTCTTGTAACAGGGCTTCTGTGGGCACTGGTGGTTTTGCCCATGAATGATATGCGCCCAGGCAAGTTGTTGGGAATTGGCCTTTTAACTTTATATTCATCATTCCTTCTTCTGAGATTGAGCAGTGCTTTTGGGTTTCTCTCGATTTCAGGTTTGTATTAACCTTAGACATGTCCAATCATCAGATTGATAATTTCACTTCTAGAAAGCATGCCCTATTCATTATTACAAAAATATTACCATTAATTTATGGTACCAGGCTTGTGAATAGCTTCCGTGTTGCTAGGTAATATGCATGTATGAATAGCTTCCCACTGTCACTGATATGAAAGTGTGACAGTTTTAAGGAAACTATCTTGTTTAGGCCATTGGCAAGAAATTTGTTCTGGCTCTCTTGTGACTTTTTAGTAATATAAGCTGAATATCTGGTGAATCACTGAGATTATAGATCCATTTTATGAGTTAGCTGTAGGTAGTCCACTGTCCTGAAGGTAGGTTTTAGATATAACACACTAAAAATAGACCAACCCTAATTCTTAAGATGTACACATTATCATTGTACAGATGATTCTATTTTATTATTTCAGTAATAGTTATTAGATAGTGTATTG

Ace file of the UniGene sp_v3.0_unigene3954

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cation/calcium exchanger 4 n=2 Tax=Arabidopsis RepID=CCX4_ARATH	-	-	0.0	51%
FL-Next	sp=Cation/calcium exchanger 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Sma3	Ca2+ antiporter/cation exchanger	-	-	5.891e-21	-

Source	Gene names
Sma3	At1g54115; At3g14070; At5g17850; At5g17860; F15I1.21; GSVIVT00003826001; GSVIVT00016426001; GSVIVT00017437001; GSVIVT00028003001; GSVIVT00034062001; LOC_Os03g08230; LOC_Os03g45370; OSJNBa0050H14.15; OSJNBa0075A22.24; OSJNBb0076N15.2; Os03g0180000; Os03g06

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	-
Sma3	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	sodium ion transmembrane transporter activity	GO:0015081	Molecular Function	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	cellular cation homeostasis	GO:0030003	Biological Process	-
Sma3	response to cation stress	GO:0043157	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G54115.1	ATCCX4, CCX4 cation calcium exchanger 4 chr1:20202118-20204052 FORWARD LENGTH=644	53%
RefSeq	Arabidopsis thaliana	NP_564650.1	cation/calcium exchanger 4 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002331198.1	Ca2+ antiporter/cation exchanger, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SYG9

Fln msg: your sequence is longer than subject: 704 - 644

Fln protein: MGKPGLGKLRKHFRILYNLGFAVLLFIFISDRKNLVKSPLFLGGDSSKASFRWSLESFESNSGPKASHKWIFNRDNSVLDIDRSRSRILIQNTSEARLNFSGILAKSPADKQQHSVTENSSETGLVVPTGLETVQNVQSGSLCAGLKEHTGYGSQCEFIKANKQCTSGGFFEYISFFYCTCEKWTIFGYVILALWLVALFYMLGNTAADYFCCSLEKLSNLLKLPPTVAGVTLLPLGNGAPDVFASIAAFMGADAGEVGLNSVLGGAVFITCVVAGLVALFIAGSRAQIDRRSFIRDVCFFLLTLASLSLILFVGKINLWGALAFISIYILYAFTLAANEFMRKQTRKLKWDSMTPMQSFPGSTIPLGCEDEDDSMYSPLLDLESTTGLADGHGRLETSLPQWMWASNVAIFSNQGLSKTVEETRPLWGWSEDSENYQTRCSLSGFLQCLIEWPLTIPRQLTIPIVEDERWSKGIAVASVTLSPILLALLWNIQEVKPLGIGKVAYVIGGILGAIFGTVGYFTTKTEHPPRTFLFPWVVGGFVMSIVWFYIIANELVALLVSFGVIFEINPSILGLTVLAWGNSMGDLMSNVALALNGGDGVQIAMSGCYAGPMFNTLVGLGVPLLLGSWSKRPAAYIVPKDTSLFYTLGFLVTGLLWALVVLPMNDMRPGKLLGIGLLTLYSSFLLLRLSSAFGFLSISGLY*

Protein Length: 705

Fln nts: TACCCTTTTGATTGTTTCTTCCGTTTCAGCTATATGCCCATGGTCATTTTCTGCCTAGAATAAATATCTGTTATCCTTTTACAGAATTGCTGTGAGGGGTTGGGAGCATAGAAGTTCCCAAATATTTGGCCTTCGAAGGTTGAGTTCGTCATCACGCCTGTGAAAAATACGGGAAATCGATGACCCAAATTGTATTAGTGGAGGTGGAGAAATATAATTTGGTTTCTTGAGTGAAAACT_-_ATGGGAAAACCTGGTTTGGGCAAACTGCGAAAACACTTTCGCATACTGTATAATCTAGGGTTTGCTGTTCTGCTGTTTATTTTTATTTCTGACCGCAAAAACCTTGTGAAATCCCCTCTTTTCCTCGGTGGGGATTCTTCAAAAGCTTCTTTTAGATGGAGCTTGGAGAGCTTTGAATCCAACAGTGGCCCAAAAGCATCACATAAATGGATATTCAATAGAGATAATTCTGTTTTGGATATAGACCGCAGCAGGTCGAGAATTCTTATTCAAAACACATCAGAAGCAAGGCTTAATTTTTCAGGAATTTTGGCTAAAAGCCCAGCAGATAAACAACAACACTCTGTAACAGAAAACTCGTCAGAAACAGGCCTTGTGGTGCCCACTGGTTTGGAAACTGTGCAAAATGTTCAGTCTGGTTCTCTATGTGCAGGATTGAAAGAACACACAGGATATGGAAGCCAGTGTGAATTTATCAAAGCCAACAAGCAGTGCACATCCGGGGGATTTTTTGAGTACATATCATTTTTCTACTGCACATGTGAGAAATGGACCATCTTTGGCTATGTCATCCTAGCTCTCTGGCTCGTCGCGTTATTCTATATGTTGGGTAACACTGCGGCAGATTACTTTTGCTGTTCTTTAGAGAAATTGTCAAACCTTTTGAAGCTACCACCAACAGTGGCCGGAGTGACTCTTCTTCCTCTTGGAAATGGAGCACCTGATGTGTTTGCAAGTATTGCTGCTTTTATGGGGGCTGATGCTGGTGAGGTGGGACTCAATAGTGTTTTAGGAGGTGCAGTTTTTATTACCTGTGTAGTGGCTGGATTGGTTGCTCTATTCATTGCGGGTTCACGTGCACAGATTGATCGCCGAAGCTTTATACGGGATGTTTGTTTCTTCCTATTGACCCTTGCTTCGCTTTCTCTGATTCTGTTCGTTGGAAAGATTAATTTGTGGGGAGCACTGGCTTTTATTTCAATATACATCCTATATGCATTCACTCTTGCAGCAAATGAGTTTATGAGGAAACAAACCCGGAAGTTAAAGTGGGATTCAATGACACCCATGCAGTCTTTCCCTGGAAGTACTATTCCTCTCGGTTGTGAAGATGAAGATGATTCCATGTATAGTCCTCTGTTGGATTTAGAGTCAACTACAGGGTTGGCTGATGGTCATGGACGCTTGGAGACTTCATTGCCTCAATGGATGTGGGCTTCGAATGTAGCTATTTTCTCAAATCAGGGACTGTCAAAGACAGTAGAAGAGACTAGGCCTCTGTGGGGATGGAGTGAGGACAGCGAAAATTATCAAACAAGGTGTTCTTTATCTGGATTTCTACAGTGTCTTATCGAATGGCCATTGACAATACCAAGACAATTGACCATCCCTATAGTGGAAGATGAGCGATGGTCAAAAGGCATTGCAGTTGCATCTGTAACATTGTCACCAATTCTTTTGGCTCTGCTCTGGAATATTCAAGAAGTCAAGCCCTTGGGTATTGGCAAGGTAGCATATGTTATTGGAGGAATTTTGGGTGCTATATTTGGAACCGTTGGATATTTTACAACCAAGACAGAGCATCCTCCACGGACATTCTTGTTTCCTTGGGTTGTTGGAGGTTTCGTAATGAGTATAGTGTGGTTTTACATCATTGCAAATGAGCTGGTGGCTCTGTTGGTTTCCTTTGGTGTAATTTTTGAGATAAATCCATCAATCTTGGGCTTGACAGTGCTGGCCTGGGGGAATTCAATGGGTGATTTGATGTCAAATGTTGCTTTAGCATTGAATGGAGGAGATGGGGTTCAGATTGCAATGTCAGGATGCTATGCAGGACCTATGTTTAATACACTTGTTGGACTAGGAGTCCCTTTGTTGCTGGGATCCTGGTCCAAGCGACCTGCTGCCTATATTGTTCCAAAAGATACCAGTTTGTTTTACACCCTGGGATTTCTTGTAACAGGGCTTCTGTGGGCACTGGTGGTTTTGCCCATGAATGATATGCGCCCAGGCAAGTTGTTGGGAATTGGCCTTTTAACTTTATATTCATCATTCCTTCTTCTGAGATTGAGCAGTGCTTTTGGGTTTCTCTCGATTTCAGGTTTGTATTAA___CCTTAGACATGTCCAATCATCAGATTGATAATTTCACTTCTAGAAAGCATGCCCTATTCATTATTACAAAAATATTACCATTAATTTATGGTACCAGGCTTGTGAATAGCTTCCGTGTTGCTAGGTAATATGCATGTATGAATAGCTTCCCACTGTCACTGATATGAAAGTGTGACAGTTTTAAGGAAACTATCTTGTTTAGGCCATTGGCAAGAAATTTGTTCTGGCTCTCTTGTGACTTTTTAGTAATATAAGCTGAATATCTGGTGAATCACTGAGATTATAGATCCATTTTATGAGTTAGCTGTAGGTAGTCCACTGTCCTGAAGGTAGGTTTTAGATATAACACACTAAAAATAGACCAACCCTAATTCTTAAGATGTACACATTATCATTGTACAGATGATTCTATTTTATTATTTCAGTAATAGTTATTAGATAGTGTATTG

Fln Alignment:

Contig3954___FRILYNLGFAVLLFIFISDRKNLVKSPLFLGGDSSKASFRWSLESFESNSGPKASHKWIFNRDNSVLDIDRSRSRILIQNTSEARLNFSGILAKSPADKQQHSVTENSSETGLVVPTGLETVQNVQSGSLCAGLKEHTGYGSQCEFIKANKQCTSGGFFEYISFFYCTCEKWTIFGYVILALWLVALFYMLGNTAADYFCCSLEKLSNLLKLPPTVAGVTLLPLGNGAPDVFASIAAFMGADAGEVGLNSVLGGAVFITCVVAGLVALFIAGSRAQIDRRSFIRDVCXXXXXXXXXXXXXXVGKINLWGALAFISIYILYAFTLAANEFMRKQTRKLKWDSMTPMQSFPGSTIPLGCEDEDDSMYSPLLDLESTTGLADGHGRLETSLPQWMWASNVAIFSNQGLSKTV-EETRPLWGWSEDSENYQTRCSLSGFLQCLIEWPLTIPRQLTIPIVEDERWSKGIAVASVTLSPILLALLWNIQEVKPLGIGKVAYVIGGILGAIFGTVGYFTTKTEHPPRTFLFPWVVGGFVMSIVWFYIIANELVALLVSFGVIFEINPSILGLTVLAWGNSMGDLMSNVALALNGGDGVQIAMSGCYAGPMFNTXXXXXXXXXXXSWSKRPAAYIVPKDTSLFYTLGFLVTGLLWALVVLPMNDMRPGKLLGIG
Q9SYG9______________FRGIFNGLCAIILFIFFFDQSDIYRNPLLKN------------LSFVDSSGK-------FNRGFSQFTVPR-------RHLSEVDTNGS---------------SGNSSLSG-------------DSTVSCSGLHEHRGYADQCEFLKSNPICSPDGFFDYLKFFYCSCRDFKILGYILLGVWLVALFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFASIAAFVGSDKGEVGLNSVLGGAVFVTCVVVGIVSLCVADKEVKIDKKCFIRDLSFFLFTLVALMVILMVGKVTVGIAIAFVSIYVFYASLVAANEILRKHSRRLKLDSITPLLPMQGSVFSSPSVEEDIPMYSPLMELDT----GEGPPRLHDSLPQWMWATNVAIYSNHFAKANVHDEERPPWGWTEDGAEVES--SLCSKITSLLETPLTVPRRLTIPLIEEDSWSKTYAVASVSLAPVLLSFLWSSQDDTSLQARIVAYFIGIAIGSTLGYLAFKNTEPDRPPQIYLIPWVLGGFIMSIVWFYMIANELVALLVTFGGIYGINPSILGLTVLAWGNSMGDLVSNIALSMNGGDGVQIALSGCYAGPMFNTLVGLGMSMFLGAWSKSPETYMIPEDNSLFYTLGFLIFGLIWSLVMLPRNEMRPNKVMGIG

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
2060	66		33		0.997452
2219		25	75		0.996473
2223	25		75		0.996473
2224		25		75	0.996473
2225		25		75	0.996473
2229		75	25		0.996473
2231		75		25	0.996473
2232	75		25		0.996473
2234		25	75		0.996473
2236	75	25			0.996473
2238		25	75		0.996473
2318			11	88	0.923564
2320		11		88	0.923564
2323	11		88		0.923564
2324		11	88		0.923564
2325		11		88	0.923564
2328		88	11		0.923564
2329			11	88	0.923564
2332		88	11		0.923564
2333			88	11	0.923564
2334	88	11			0.923564
2335	11			88	0.923564
2336		11		88	0.923564
2392		12		87	0.992554
2394	12		87		0.992554
2398	12		87		0.992554
2399	12	87			0.992554
2528	83		16		0.999991

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain