SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3902

Length: 1676 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3902

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	At4g36290; At5g50780; GSVIVT00007019001; GSVIVT00016039001; GSVIVT00017982001; GSVIVT00020694001; GSVIVT00036855001; LOC_Os10g10190; OJ1057_F01.26-1; OSIGBa0148D14.7; OSJNBa0033H08.4; OSJNBa0095J15.7; OSJNBb0022I16.2; Os02g0469300; Os10g0181700; OsI_07163

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	0.0	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A973

Fln msg: your sequence is shorter than subject: 264 - 290

Fln protein: SLADDLKFSKVIIYKPQLGVGMKEVSVATTIGFTKEAPLINVHGFNIYHKNRLIMPFWKVWQDNSSRGRGVVGVLEANFIEPAHDKQDFEKTAVLIRLESRLKQMTLDFWRENCDKIGYQGKNKPKREDPQSDLPSIQNPRPLSSVVPGLPSVVPGVSPQQISNSQGMAPLTNPVRNVQAVTSGKELQSVPGTSNKLVNNICEENIQLFMRCEQYRHRQLELNQMITRMETELKEGKRKYAQLVSNVEGQKKQRLEMLRKVQG*

Protein Length: 265

Fln nts: TAGTTTAGCTGATGATCTAAAATTTTCCAAAGTAATAATCTACAAGCCACAACTTGGTGTTGGGATGAAAGAGGTATCGGTTGCAACAACAATAGGATTTACAAAGGAAGCTCCTCTCATTAATGTTCACGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCATTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGATAAACAGGATTTTGAAAAAACTGCAGTCCTCATACGGTTGGAGTCAAGACTCAAGCAGATGACTCTTGATTTCTGGAGAGAGAATTGTGATAAAATTGGATATCAAGGAAAGAATAAGCCAAAAAGAGAAGATCCACAGAGTGATTTACCTTCAATTCAGAATCCTCGTCCATTGTCAAGTGTTGTTCCAGGATTGCCAAGCGTTGTTCCAGGAGTATCACCTCAGCAAATTTCGAATAGTCAGGGCATGGCCCCCTTGACAAATCCTGTTCGCAATGTTCAGGCTGTCACTAGTGGGAAGGAACTACAATCAGTTCCGGGTACATCAAACAAATTAGTTAATAACATCTGTGAGGAGAATATACAACTATTCATGAGGTGTGAGCAATATCGTCACAGACAACTGGAGTTAAACCAGATGATTACAAGGATGGAGACTGAATTGAAGGAGGGGAAACGGAAATATGCACAACTTGTATCAAATGTGGAAGGCCAAAAGAAGCAAAGACTGGAGATGTTGAGAAAGGTACAAGGATGA___TAATAAGAGCCTTTGGAAAGCAATAGAAGCCAATTCAAAAGCGTATGGCTAAAATTTCCTCCGATTTTTTTTGGACTGCAATCCTTTCCTCGGTACCAGATATTGAACAAAGTTTATTTCTAAGGCAAGGAGGAAATCTTGGTCTGGTATATCATGCTGTCCATTTTTGTGCAATTAAATTGAAAGCCTCGGCAATTTTTGCCCACAAGATATTCTCAGGCTGTTAGTAACGATCTGTATAGGGTTATTGTTGCAAACCTAGTAGGGAGAACATTCAATGGCAATGAGGAGGTAGCAATCTGTGACTGTAAGATATCAACTTCACCGCCCAATATCCAATTTTTTGTAGTATCTATTACCCATGGGTAAAACCATGGATAGAAATACTCCATTTGTAAAGATGTACAGGAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCGTTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCCATCTTATTGATAGTGTTGATCTTACCATAGGGACAATTAAATGAAAACCAAAGCAATCATGGAGGAAAGGTATTCACTGAGCATCAAATATTTGCTGCAGATAGGGACTGAGATTAGACCTAATCAAGAAATGTTTTGGGTCTCTGGTTCCATATTCATATGTAAAACTGACCTGTTCCTTTGAGCATTTTTCCATGGTCACTATAGTGGGCACCGTTGGATGACAGGAAGCTCCCTTCTTTGGATCAGTTTAGATCATTGCAAAACCATTTTTGTACAGAACGATTTCCTTCAACAAGATGTAGCTATCTATCTATGCAGATAGCAGGAATTTTTGAATTTTGAACCGTTGTAATGATTGATAATTTATATAAAAGTTCCCACCTTTTCAAGTGTTG

Fln Alignment:

Contig3902___TSGKELQSVPGTSNKLVNNICEENIQLFMRCEQYRHRQLELNQMITRMETELKEGKRKYAQLVSNVEGQKKQRLEMLR
D5A973______________TGNKYSQATVFLPGKFVEKVTDYNIQLFMRCEQYRHSKTQLHQVITRLENELTMARKKFAQLRSSVELQNKKQAESLR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1026	50		50		1.0
1037	88		11		0.923564
1174	57		42		1.0
1233	87	12			0.992554
1276		62		37	1.0
1298		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain