SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3888

Length: 1636 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3888 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ureidoglycine aminohydrolase n=5 Tax=Brassicaceae RepID=Q8GXV5_ARATH	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein At4g17050; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%

Source	Gene names
Sma3	AT4g17050; At4g17050; CHLREDRAFT_34332; GIP1; GSVIVT00010725001; MICPUN_71152; MICPUN_97304; OJ1058_B11.119; Os07g0495000; OsI_26077; OsJ_24321; PHYPADRAFT_178260; POPTRDRAFT_589924; POPTRDRAFT_670480; POPTRDRAFT_670481; RCOM_0121740; VITISV_010306; VITIS

Source	GOs	Term	Type	e value	Identity
Sma3		GO:0045449	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Cupin 2, conserved barrel	IPR013096	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17050.1	UGLYAH ureidoglycine aminohydrolase chr4:9589662-9592413 FORWARD LENGTH=298	74%
RefSeq	Arabidopsis thaliana	NP_193438.2	ureidoglycine aminohydrolase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002326481.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q67XN1

Fln msg:

Fln protein: MQKFHYCILCNVFIQLLQWGPLMAVSQLEGLCSGPWEPIVKPDGQNIYAKVTNPTLSPSHLQDLPGFTRSVYKRDYALITPESHVFSAIPGWTKTTGAYVITPALGSHFVMYLAQMEENSTSALPPQDVERFLFVVKGEVVLSGGSEVTKLLVDSFAYLPSNFDHSLKSDVSSTVVIFERRYQRLGNEVPHFIVGSTDKQPLLETPGEVFSLRKLLPTTLAYDFNIHIMDFQPGEYLNVKEVHYNQHGLLLLEGQGLYRLGDSWHPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPLVHSI*

Protein Length: 310

Fln nts: ATGGTGAGGCCATGTCAGATGAGCATGGGACGAACTTCACTTATAACAAACTTTTGGAATCGCATGACTTTCAATCGAGATCATCAAAGCCACAGAGCAGTATTTGGGATTGCAAACATTACATTTGCTGAACACTAAGCTGCACCTCACACTGTATAAGCTATTTTGCTGTGCCAATTGATCTTATTCACCCCAAGCATTGGCAGGGTCATCTAA_-_ATGCAGAAATTCCATTATTGTATCCTCTGCAATGTCTTCATTCAGCTCCTCCAGTGGGGCCCGCTTATGGCGGTCTCGCAGTTAGAGGGCTTGTGTTCTGGGCCATGGGAACCTATCGTCAAGCCTGATGGACAAAATATTTATGCAAAAGTTACCAATCCCACTCTTTCCCCTTCCCATCTTCAAGATTTACCTGGTTTTACACGAAGTGTATATAAGAGGGACTATGCTCTCATCACACCTGAGAGTCATGTTTTCAGTGCCATTCCTGGCTGGACTAAGACTACTGGAGCATATGTGATTACTCCAGCTTTGGGTTCCCATTTTGTCATGTACCTGGCACAGATGGAAGAGAACTCAACATCAGCCCTTCCTCCACAGGATGTTGAAAGGTTTCTATTTGTTGTTAAAGGTGAGGTGGTTCTGTCAGGAGGTTCTGAGGTTACTAAGCTACTTGTTGATTCATTTGCATATCTACCTTCAAACTTCGATCACTCTCTGAAGAGTGATGTCTCTTCAACTGTTGTTATATTTGAACGGAGATACCAGAGACTAGGAAATGAGGTTCCTCACTTCATAGTGGGGTCGACAGATAAGCAGCCACTTTTAGAAACGCCAGGGGAGGTTTTTTCCCTAAGGAAGCTGCTCCCTACAACACTTGCTTATGATTTCAATATCCATATAATGGATTTTCAACCTGGAGAGTATCTCAATGTGAAGGAGGTGCACTACAATCAACATGGATTGTTGCTTTTGGAAGGGCAAGGTCTATATCGCTTGGGTGACAGCTGGCATCCAGTACAAGCTGGTGATGTTATTTGGATGGCTCCATTTGTACCACAATGGTATGCAGCTCTGGGGAAGACTCGTTCACGCTATTTGTTGTACAAGGATGTGAACAGGAATCCTTTGGTACATAGCATTTGA___ACTTTGTAATCTTGGGTTCATAAGTTAAAATTATAGCTCGTACTTCATTGAAGTCTTATGTTACAATATACGACCTCATGTAGTTGGGGATGCACGAGTCATGCGACAAAGAGGGTTTTTCTGAGAACTTTTCATGGAGGAAACACTATTGGTCATACTTTTGTCTTGACCATGTATGCAATACTTATATATTGGGTATACAGTGATGTTTGTCATTTTAGATGTTAAAGTTCTTGATACGACAAAATACTTATCTGCATATGTTGCATTGGTTTTTGGGATGGGGAACTGTGGGAATGGGAAGATGCATCCTCGGGACAGTTAGACTGCACACCCAAAATTTTTAGGGAATGGCAGGTTGGGAATAGAAATCAAATGTTAACAATAATAACTATTAAAACTTTTAGAATTCAGTACAAACATTTGTAGCTGCTTGTTAGCATAATGGTTTATACCATATAGTGTTATGCAGGTTTGAGTGAAATTCTAGTAT

Fln Alignment:

Contig3888___EGLCSGPWEPIVKPDGQN--IYAKVTNPTLSPSHLQDLPGFTRSVYKRDYALITPESHVFSAIPGWTKTTGAYVITPALGSHFVMYLAQMEENSTSALPPQDVERFLFVVKGEVVLSGGSEVTK-LLVDSFAYLPSNFDHSLKSDVSSTVVIFERRYQRLGNEVPHFIVGSTDKQPLLETPGEVFSLRKLLPTTLAYDFNIHIMDFQPGEYLNVKEVHYNQHXXXXXXXXXXXXXGDSWHPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL
Q67XN1______________DGFCSAP--SIVESDEKTNPIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNSSSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
99	80			20	0.995493
271	66		16	16	0.988813
912		10		90	0.90298
914	90	10			0.90298
915	10	90			0.90298
1097	87			12	0.992554
1523			16	83	1.0
1532	93	6			0.99903
1544		13	82		1.0
1545		13		86	1.0
1546		17	82		1.0
1547	3	13	82		1.0
1548	10	86		3	1.0
1561		25	75		1.0
1562	73	26			1.0
1563		26		73	1.0
1564		10	5	73	0.999718
1565	33	16	50		1.0
1566	50	8	8	33	1.0
1567	75	12		12	0.975346
1569	12		75	12	0.975346
1575	14	85			0.993533
1576		14	85		0.993533
1592		16		83	0.994512
1609		33	66		0.997452
1610		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain