SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3741

Length: 1478 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3741

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	starch synthase, isoform V [Vigna unguiculata]	-	-	0.0	75%
FL-Next	tr=Starch synthase VI; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	44%
Sma3	Starch synthase VI	-	-	2.908e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Starch synthase.	EC:2.4.1.21	-	1.677e-25	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.677e-25	%
Sma3	Metabolic pathways	01100		1.677e-25	%

Source	Gene names
Sma3	AT4g18240; At1g11720; At4g18240; At5g65685; CHLREDRAFT_153781; CHLREDRAFT_185710; CHLREDRAFT_191662; CHLREDRAFT_205618; GSVIVT00003411001; GSVIVT00010759001; GSVIVT00017037001; H0215F08.14; MA4_106O17.2; MICPUCDRAFT_33450; MICPUCDRAFT_36395; MICPUCDRAFT_4

Source	GOs	Term	Type	Identity
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glycogen (starch) synthase activity	GO:0004373	Molecular Function	-
Sma3	starch synthase activity	GO:0009011	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	glucan biosynthetic process	GO:0009250	Biological Process	-
Sma3	starch biosynthetic process	GO:0019252	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	IPR006137	-	-
Sma3	NADH-ubiquinone oxidoreductase, 20 Kd subunit	IPR006138	-	-
Sma3		IPR009756	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G18240.1	ATSS4, SSIV, SS4 starch synthase 4 chr4:10082221-10087044 FORWARD LENGTH=1040	75%
RefSeq	Arabidopsis thaliana	NP_193558.3	starch synthase 4 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002298514.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8YDY5

Fln msg: your sequence is shorter than subject: 447 - 655

Fln protein: DMQIDSYFDGQLFKNKVWLGTVEGLPVYFIEPHHPAKFFWRGQFYGEGDDFRRFTFFSRAALEFLLQSGKKPDIIHCHDWQTAFVAPMYWDIYAPQGLNSARIAFTCHNFEYQGTESATALASCGLDVQQLNRPDRMQDNFRHDRVNSVKGGIVFSNIVTTVSPTYAEEVRASEGGRGLHLTLAAHSKKFFGILNGIDTEAWDPSTDPLLDFQYSANDLNGKAENKAALRKFLGLAVSDARIPLVGCITRIVPQKGVHLIRHAIYRTLECGGQFVLLGFSPIPHIQREFEGIANQFCEHPSIRLILKYDEVLSHYIYGASDIFIIPSIFEPCGLTQMIAMRYGSIPVARRTGGLNDSVFDVDDETIPAKVRNGFTFSAADEQGLNHALDRAITYYRKKPNWWLELVKKVMTIDFSWDSSATQYEELYEKALARARAQQAHISSSTR*

Protein Length: 448

Fln nts: TGGACATGCAGATTGATTCATATTTTGATGGTCAGTTGTTCAAAAACAAAGTTTGGTTAGGGACAGTTGAAGGTCTTCCTGTGTACTTCATTGAGCCTCACCATCCAGCAAAGTTCTTTTGGCGAGGACAGTTCTATGGAGAGGGTGACGATTTCAGACGTTTTACATTCTTTAGTCGAGCTGCATTGGAGTTTCTTCTACAATCTGGAAAGAAACCAGACATAATTCATTGCCATGATTGGCAAACTGCATTTGTTGCACCAATGTATTGGGATATCTATGCCCCTCAAGGTCTTAATTCAGCAAGGATTGCTTTTACATGCCACAATTTCGAGTATCAAGGAACAGAATCTGCCACAGCTCTGGCATCCTGTGGTCTGGATGTTCAACAACTAAACAGACCAGACAGAATGCAGGATAATTTCAGGCATGACAGAGTAAATTCTGTTAAGGGGGGTATCGTTTTCTCAAATATTGTAACAACTGTATCACCAACATATGCAGAGGAGGTCCGAGCTTCAGAGGGTGGCAGAGGACTTCATTTAACTTTAGCTGCTCATTCAAAAAAATTCTTTGGAATATTAAATGGAATTGACACAGAGGCATGGGACCCATCAACTGATCCTCTTTTGGATTTCCAATACAGTGCCAATGATCTTAATGGAAAAGCAGAAAATAAAGCAGCGTTGAGAAAATTCCTTGGATTAGCTGTTTCTGATGCTAGGATTCCATTGGTTGGTTGTATTACTCGTATTGTTCCCCAGAAAGGTGTTCACCTTATTCGACATGCTATATATCGAACCCTAGAATGTGGAGGGCAATTTGTTCTTTTGGGCTTCAGTCCAATTCCACATATTCAGCGTGAATTTGAGGGCATTGCAAACCAATTTTGTGAGCATCCCTCGATACGGTTGATTCTGAAGTACGACGAGGTCCTTTCACATTACATTTATGGTGCATCAGATATATTCATCATCCCATCTATATTCGAGCCATGTGGATTGACCCAGATGATAGCCATGAGATATGGCTCCATACCTGTAGCACGGAGAACAGGAGGCTTAAATGACAGTGTTTTTGATGTGGATGATGAGACGATCCCTGCAAAAGTTAGAAATGGATTTACATTCTCCGCAGCTGATGAACAGGGACTAAACCATGCATTGGATCGTGCTATTACTTACTATAGAAAAAAGCCAAATTGGTGGCTAGAACTTGTTAAGAAGGTGATGACAATAGATTTTAGCTGGGATTCTTCTGCTACTCAGTATGAAGAGCTTTATGAAAAGGCTTTGGCAAGAGCAAGAGCCCAGCAAGCCCACATTTCTAGCTCCACTCGATAA___TCTGCTTCAAATTCATTTATGTTTTGATAATATAACAATTTGAAGAAAACAAACATGGTACTTCCCTTGCCACCTTTTTATCCTTGCAAATTCTTTATTATTTGTAATTTATACAGATGCCAGATCTTTGTTAGT

Fln Alignment:

Contig3741___SYFDGQLFKNKVWLGTVEGLPVYFIEPHHPAKFFWRGQ--FYGEGDDFRRFTFFSRAALEFLLQSGKKPDIIHCHDWQTAFVAPMYWDIYAPQGLNSARIAFTCHNFEYQGTESATALASCGLDVQQLNRPDRMQDN----FRHDRVNSVKGGIVFSNIVTTVSPTYAEEVRASEGGRGLHLTLAAHSKKFFGILNGIDTEAWDPSTDPLLDFQYSANDLNGKAENKAALRKFLGLAVS-----------DARIPLVGCITRIVPQKGVHLIRHAIYRTLECGGQFVLLGFSPIPHIQREFEGIANQFCEHPSIRLILKYDEVLSHYIYGASDIFIIPSIFEPCGLTQMIAMRYGSIPVARRTGGLNDSVFDVDDETIPAKVRNGFTFSAADEQGLNHALDRAITYYRKKPNWWLELVKKVMTIDFSWDSSATQYEELYEKALAR
B8YDY5______________SYHNGDWVSTRAYRGHVTGIPVILIEP---ANHFFKGQCVYGGSYNELEAYLFFSRACLELMQVTATQPDIIHVHEWQTSALSLLYWDMYHNLSVKKPRLILTIHNMEHYGECRQEQLNICGLDGSVYNTIEKALDDRTIGHNPERLSLLKGGIVYSNAVTTVSPTYVKETLCSGW---LSNTLMQYREKYVGILNGIDTVLWDPATDVFLPAHFQAHETEGKRICKQYVQRGLGLDSNLMTMGKKITNKGSNSPLVVCITRLVAQKGLHLIRYAINRVAELGGKFILLGTAPDGRVQEEFEYLSNQCKESNNVRLLLTYSEELSHMLYAAADIVLVPSMYEPCGLAQMIGMRYGAVPIVRRTGGLADTVFDVDHDQSHANQPNGFVFEGIDEGSLNGALERAFQYYNEKPQLWMELISKLMQIDNSWEKSAGEYIDLYNSVRVR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
273		25	75		0.996473
451	80			20	0.995493
536	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain