SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3725

Length: 1658 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3725

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9REY7_RICCO	-	-	0.0	62%
FL-Next	sp=Probable S-acyltransferase At3g04970; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Sma3	Zinc finger family protein, putative, expressed	-	-	1.755e-07	-

Source	Gene names
Sma3	At3g04970; GSVIVT00006114001; LOC_Os03g24900; MtrDRAFT_AC155882g35v2; Os03g0363900; OsI_11680; OsJ_10949; PHYPADRAFT_129688; POPTRDRAFT_782822; RCOM_1429730; T9J14.8; VITISV_038833;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04970.1	DHHC-type zinc finger family protein chr3:1376240-1378339 FORWARD LENGTH=397	61%
RefSeq	Arabidopsis thaliana	NP_187148.2	DHHC-type zinc finger-containing protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002328533.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3EBC2

Fln msg:

Fln protein: MAAQWVLVLHCCLTALVIVAFLCGQRPIFEGTFVQKINHFITVGAYDLLLRAALVLCGSKGRNMFLSVEHYCCDRPNPILQLLYLATIGVIYYFALKSSSNYIPGYYVPGVHWYTSIVAGLVGIILFILTSFSDPGTINSENVSRYISAYPYDGIIYFEKQCTTCNIPRPARAKHCSICDRCVARFDHHCGWMNNCIGEKNLRYFLAFLLWHFFLCLYGVVILGAILAGELKERKVFRILTVYYGIENSFAKLTPHIVQWFLNSYNTQVLLILFMTVTSLLLAGFFGYHVYLVITNTTTNETFKWDSYKKWQLSLTQVKAASESLKHSAELDYAGKQMSPDANTHNSKCGLFNCYLSFKGLFARWRKEKQDFVQETMFMIEE*

Protein Length: 384

Fln nts: CAATTGAGTTCTGACAAATTCTTTTTACAGCGCGTTGAATTCCATTGAGGCAGAGCAGCGAGTGAAAATGGGAAGCACATAAAATTAAGAAAGAACGATCAAGAAGAAAGAACA_-_ATGGCTGCCCAGTGGGTACTCGTATTGCATTGCTGCTTAACAGCTTTAGTAATCGTTGCATTTCTTTGTGGACAACGGCCCATTTTTGAAGGAACCTTTGTGCAGAAGATCAACCATTTCATCACTGTTGGAGCCTACGATCTTCTTCTAAGAGCGGCCTTAGTTCTTTGTGGATCAAAGGGTAGAAATATGTTTTTATCAGTTGAACACTACTGCTGCGACCGTCCAAACCCAATATTGCAGCTTTTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAACTACATTCCTGGTTACTATGTCCCAGGAGTGCATTGGTATACAAGCATTGTTGCAGGGCTTGTGGGGATTATCCTTTTCATTCTTACCAGTTTTTCTGATCCAGGTACCATCAATTCTGAGAATGTTTCGAGATACATCTCAGCGTACCCTTATGATGGTATCATATACTTCGAAAAACAATGTACGACATGCAACATTCCAAGACCTGCAAGAGCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCGCGCTTTGACCATCATTGTGGGTGGATGAACAATTGCATTGGAGAGAAGAATCTTCGGTACTTCTTGGCATTTTTGCTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGTTATCCTTGGTGCGATTCTAGCGGGTGAATTAAAGGAACGAAAGGTGTTTCGTATTTTAACTGTTTACTATGGTATTGAAAATTCATTTGCCAAATTGACTCCCCACATTGTACAGTGGTTTTTAAACTCCTACAATACCCAAGTACTTTTAATATTGTTCATGACAGTGACTTCCTTACTGCTAGCAGGATTCTTTGGTTATCATGTTTACCTTGTTATTACTAACACCACCACCAATGAGACTTTCAAGTGGGACAGCTACAAGAAGTGGCAGCTTAGTCTAACTCAAGTTAAAGCTGCTAGTGAATCACTGAAGCACTCTGCTGAACTTGACTATGCAGGGAAGCAAATGAGCCCTGATGCAAACACCCATAACTCAAAGTGTGGTTTGTTTAATTGTTACCTCAGTTTCAAGGGATTATTTGCAAGGTGGCGAAAAGAAAAGCAGGATTTTGTGCAAGAAACAATGTTTATGATAGAGGAGTGA___TCCATAACATTAGTGAAGCTATATATCCATTATCATGTAGAAAATATTTTTCTTTGACAAAATCAGATTAGTCTCTCTCCATTTAACCTGTATCTTGTATGTGTTCTTTATTATCATCTAAAGCTTGTAGAAAGATTGCCCTGCTACTATTACTTATCAGCAAAAGGATGTTGTATTGTATTCGAAGGTTCCATTTCTTTTCATAAAAAAATCTTGCACAGAATAGGTGGCACACAAAACCTGGTCTATGGGTGGGGTGCAGGAATATTTGAGATCCAATAAGGCAAAGTCGTTACTGGACATATCATATATGTAATCAGAATTGGAAGATTTGATGTTAGTCACAATGTAATGCATCATATCATATATGTAATCAGAATTGGAAGATTTGGTGT

Fln Alignment:

Contig3725___MAAQWVLVLHCCLTALVIVAFLCGQRPIFEGTFVQKINHFITVGAYDLLLRAALVLCGSKGRNMFLSVEHYCCDRPNPILQLLYLATIGVIYYFALKSSSNYIPGYYVPGVHWYTSIVAGLVGIILFILTSFSDPGTINSENVSRYISAYPYDGIIYFEKQCTTCNIPRPARAKHCSICDRCVARFDHHCGWMNNCIGEKNLRYFLAFLLWHFFLCLYGVVILGAILAGELKERKVFRILTVYYGIENSFAKLTPHIVQWFLNSYNTQVLLILFMTVTSLLLAGFFGYHVYLVITNTTTNETFKWDSYKKWQLSLTQVKAASESLK
Q3EBC2______________MAVQWLLVCHGMMTLTVVISFLCGQWPIFKGTPFQWIHYFLTFGAYDYFLRFVGFVFGSKGTDVILSVEYFCCDRPNPILQVIYIAIMGSTYFLTAKSSFIYIPGYYLGDVHKYTSFLAVIVGVILFLLTCFSDPGTVNAENVSRYISAYPYDDIIYSKKECSTCKIPKPARSKHCSICNRCVARFDHHCGWMNNCIGERNTKYFMAFLLWHFLLCLYGTVAIGFILAGRVKELRVVHILTVYYGVDKSFRSLAPRVIQWLVGTYNTQILLMVFLAIVSLLLAGFFAYHANLCLTNTTTNETFKWREYISLNKKLSEAKASAAALK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
999	16	83			0.994512
1001	83		16		0.994512
1002	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain