SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3720

Length: 1687 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3720

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9RGI0_RICCO	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Aspartic proteinase nepenthesin-1	-	-	7.64e-11	-

Source	Gene names
Sma3	At1g01300; At1g25510; At3g18490; At3g20015; At3g61820; At5g10770; B1386G10.6-1; F15G16.210; F2J7.6; F6F3.10; GSVIVT00002585001; GSVIVT00007512001; GSVIVT00008623001; GSVIVT00010914001; GSVIVT00017643001; GSVIVT00019250001; GSVIVT00030305001; GSVIVT0003281

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G20015.1	Eukaryotic aspartyl protease family protein chr3:6978746-6980158 REVERSE LENGTH=470	56%
RefSeq	Arabidopsis thaliana	NP_188636.2	aspartyl protease family protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002306246.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV19

Fln msg: your sequence is shorter than subject: 444 - 496

Fln protein: TAAGGVEYKRETKPRRTAWSVPVVHRDTLLVNNAANATASFERRLEEKLRREAARVRGLEQRIERLLRFKKDPAGSYENVAEVTAEFGGEVVSGMEQGSGEYFTRIGVGTPTREQYMVLDTGSDVVWIQCQPCQECYSQSDPIFNPSSSTSFSTVGCDSAVCNQLGAYGCDGGSCPYKVTYGDGSSSVGSFATETLTFGSTSVLNVAIGCGHDNVGLFVGAAGLLGLGAGSLSFPTQLGTQTGRAFSYCLVDRKSESFGTLEFGPESVPVEAIFTPLKTNPFLPSYYYLSLSAISVGGALIESIPPEVFHIDETSGRGGVIIDSGTVITRLQTPLYDALRDAFVAGTRQLPRADGFSVFDTCYDLSGLQFVSVPQLGFHFSNGATFILPAKNYLIPVNTMGTFCFAFAPISYGVSIIGNIQQQGIRVSFDSANSLIGFGFGQC*

Protein Length: 445

Fln nts: ACTGCGGCCGGCGGGGTTGAGTATAAAAGAGAAACGAAGCCGAGACGGACGGCCTGGAGCGTGCCAGTAGTGCACAGGGATACTCTTTTGGTCAACAACGCCGCCAACGCAACGGCGTCCTTCGAGCGCCGGCTGGAGGAAAAGCTGAGGCGGGAAGCGGCAAGGGTCCGGGGCCTGGAGCAGCGCATAGAGAGGTTACTGAGATTCAAAAAGGATCCGGCGGGGAGCTACGAAAATGTGGCGGAGGTCACTGCAGAGTTCGGCGGGGAGGTCGTGTCGGGAATGGAACAAGGGAGTGGCGAGTACTTCACGCGTATAGGTGTTGGGACGCCGACGAGGGAGCAATACATGGTTCTCGACACCGGCAGCGACGTGGTCTGGATTCAGTGTCAGCCGTGTCAAGAGTGCTACTCTCAGTCGGACCCCATCTTCAACCCTTCCTCCTCCACCTCTTTCTCCACCGTCGGCTGCGACTCCGCCGTCTGCAATCAGCTCGGTGCGTACGGCTGTGACGGTGGGAGCTGCCCGTACAAGGTAACTTACGGCGACGGTTCCTCCTCCGTCGGGAGCTTTGCCACCGAGACTCTAACGTTCGGTTCCACGTCTGTCCTCAACGTTGCCATTGGCTGCGGCCACGACAACGTCGGCCTGTTTGTCGGGGCTGCTGGGTTGCTCGGCCTCGGGGCGGGGTCGCTTTCATTCCCCACGCAGCTAGGCACACAGACGGGCCGCGCCTTCTCCTACTGCCTCGTCGACCGCAAGTCGGAATCCTTCGGTACGCTCGAATTCGGGCCGGAATCCGTTCCCGTCGAGGCGATCTTCACGCCGCTGAAGACCAATCCCTTTCTACCCTCCTACTACTATCTCTCCCTCTCCGCCATTAGCGTTGGCGGCGCACTGATCGAATCAATCCCGCCGGAGGTCTTCCACATCGACGAAACGTCGGGCCGTGGGGGTGTCATCATTGACTCAGGCACTGTCATCACACGCCTCCAGACACCCCTCTACGATGCCCTGCGGGACGCCTTCGTCGCGGGCACGCGACAACTCCCCAGAGCCGATGGGTTCTCCGTCTTCGACACCTGCTACGACCTGTCGGGCCTACAATTCGTGAGTGTTCCCCAGCTGGGCTTCCATTTCTCCAACGGGGCAACCTTCATTCTTCCGGCTAAAAATTATCTGATACCGGTGAACACGATGGGAACATTTTGCTTTGCATTTGCACCGATCAGCTATGGTGTGTCCATCATTGGGAATATTCAGCAGCAGGGCATTCGGGTTTCCTTCGATTCCGCCAACTCTCTCATTGGTTTCGGTTTCGGCCAGTGCTGA___TTAACATTTATTGCTTCCTTTACAATAAAATATTAGTGCTGCTTAAAATAATATATATTTTAGATTTATCATTTCTTGGTAGCGTGCACATTGCGCATCTTGATCTGCATCTGCAATCGCATGCGTTTGGTTTGTTGTTGAAACAGAGTATATGAGAATTCTTCTTTGAGTGAAAGTTGCAAATAATGATTTGTATTACATAATCAGCGTAAGTTGTACTTTCATGTGAGGTGAGGGGAGTATATTCACCTCCATTATCAGTCCTTAAAATTTCAATATTATCTCGTTCCATTAATAGAGTTGAATCTGTAACAGACTTTGTAATAGATGAACTACTATTCAATTTCAACAGTGT

Fln Alignment:

Contig3720___TAAGGVEYKRETKPRRTAWSVPVVHRDTLLVXXXXXXTASFXXXXXXXXXXXXXXXXGLEQRIERLLRFKKDPAGSYENVAEVTAEFGGEVVSGMEQGSGEYFTRIGVGTPTREQYMVLDTGSDVVWIQCQPCQECYSQSDPIFNPSSSTSFSTVGCDSAVCNQLGAYGCDGGSCPYKVTYGDGSSSVGSFATETLTFGSTSVLNVAIGCGHDNXXXXXXXXXXXXXXXXXXXXPTQLGTQTGRAFSYCLVDRKSESFGTLEFGPESVPVEAIFTPLKTNPFLPSYYYLSLSAISVGGALIESIPPEVFHIDETSGRGGVIIDSGTVITRLQTPLYDALRDAFVAGTRQLPRADGFSVFDTCYDLSGLQFVSVPQLGFHFSNGATFILPAKNYLIPVNTMGTFCFAFAPISYGVSIIGNIQQQGIRVSFDSANSLIGFGFGQC
A9NV19______________TAPGGVEYKRVQKPKRTAWSVQLVHRDSLLFKGAANATASYERRLEEKLRREAARVRALEQRIERKLKLKKDPAGSYENVAGVTAEFGSEVVSGMEQGSGEYFTRIGIGTPTREQYMVLDTGSDVVWIQCEPCRECYSQADPIFNPSSSVSFSTVGCDSAVCSQLDANDCHGGGCLYEVSYGDGSYTVGSYATETLTFGTTSIQNVAIGCGHDNVGLFVGAAGLLGLGAGSLSFPAQLGTQTGRAFSYCLVDRDSESSGTLEFGPESVPIGSIFTPLVANPFLPTFYYLSMVAISVGGVILDSVPSEAFRIDETTGRGGIIIDSGTAVTRLQTSAYDALRDAFIAGTQHLPRADGISIFDTCYDLSALQSVSIPAVGFHFSNGAGFILPAKNCLIPMDSMGTFCFAFAPADSNLSIMGNIQQQGIRVSFDSANSLVGFAIDQC

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
467	25		75		0.996473
506			80	20	0.995493
514	20	20	60		0.99255
515			80	20	0.995493
519		20	80		0.995493
520	80			20	0.995493
523	20			80	0.995493
524		20	80		0.995493
525		80		20	0.995493
527	20	80			0.995493
549		60		40	1.0
663		25		75	0.996473
733	16		83		0.994512
839	85	14			0.993533
842	14	85			0.993533
857	85			14	0.993533
860	85		14		0.993533
891	16			16	0.988813
893	16		83		0.994512
894			83	16	0.994512
895		83		16	0.994512
1226	60		40		1.0
1293		25		75	0.996473
1294		75	25		0.996473
1295		75		25	0.996473
1299	75			25	0.996473
1300	75			25	0.996473
1301		75	25		0.996473
1302			25	75	0.996473
1305		75	25		0.996473
1309		33		66	0.997452
1312		33	66		0.997452
1313	33			66	0.997452
1513	20		80		0.995493
1548		20		80	0.995493
1556			20	60	0.99255
1558		60	20		0.99255
1560			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain