SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3684

Length: 1932 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3684

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch repeat-containing protein [Arabidopsis thaliana] gb\|AAL06507.1\|AF412054_1 AT5g50310/MXI22_1 [Arabidopsis thaliana] gb\|AED95924.1\| kelch repeat-containing protein [Arabidopsis thaliana]	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Source	Gene names
Sma3	At5g50310; GSVIVT00015878001; H0805A05.4; OSJNBa0081L15.6; Os04g0483600; OsI_16364; OsJ_15232; PHYPADRAFT_176143; POPTRDRAFT_1101574; RCOM_1507410; VITISV_027056;

Source	InterPros	Term	Type	Identity
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G50310.1	Galactose oxidase/kelch repeat superfamily protein chr5:20474562-20479281 FORWARD LENGTH=666	60%
RefSeq	Arabidopsis thaliana	NP_568723.1	kelch repeat-containing protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002322224.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQW4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 112 aas, putative chimeric sequence, your sequence is shorter than subject: 130 - 327

Fln protein: KISQEDDIDAILANIQKEEAKKKEVHVEEHVPPPSARCNCSVTVNPLKETELIIYGGEFYNGDKTFVYGDLYRYNAEKREWKLISSPNTPPPRSAHQAVAWKNSLFIFGGEIHISKSRKVSPLQGLLAS*

Protein Length: 131

Fln nts: GAAGATTTCACAAGAGGACGATATTGATGCCATCCTGGCCAATATACAGAAGGAAGAGGCAAAAAAGAAAGAAGTTCATGTTGAAGAACATGTGCCACCCCCTTCAGCTCGATGCAACTGTTCAGTAACTGTGAATCCTCTAAAGGAGACTGAGTTGATTATATATGGGGGTGAATTTTATAATGGGGATAAGACCTTTGTCTATGGAGATCTTTATAGGTACAATGCTGAAAAAAGAGAATGGAAGCTGATTTCTAGTCCCAATACTCCACCCCCTCGCAGTGCTCATCAGGCAGTAGCATGGAAAAATTCATTATTTATTTTTGGTGGTGAAATTCACATCTCCAAATCAAGAAAGGTTTCACCATTACAAGGACTTTTGGCGTCTTGA___CCTGAATACAAATCAGTGGGAACAAATACAGTTAAAAGGTTCTCCCAGTGCAAGATCAGGGCATCGTATGGTTTTGTACAAGCACAAGATTATTATCTTTGGTGGTTTCTATGATACCCTAAGAGAAGTGAGGTATTACAATGATTTGCATGTTTTTGATCTTGATGATTTTAAGTGGCAAGAAATCAAACCAAAGCTCGGAAGCTTATGGCCTAGTCCAAGGAGTGGTTTCCAATTTTTTGTTTACCAAGATGAGATCTTTTTATATGGTGGATATTTTAAGGACCATGTCTCTGATAAAGATGGCTCTGAGAAGGGAATTGTTCATGCGGACATGTGGGTCCTTGATCTGAGGAGTGGAGAGTGGAATAAGGTGAAGAAGTTGGGATTGCCTCCTGGACCACGTGCTGGATTTTCTATGTGTGTTCACAAAAAGCGTGCTCTTCTATTTGGAGGTGTGGTGGATATGGAGGTTCAAGGTGATGTTCTTCACAGTTTGTTCTTGAATGAGCTTTATGGTTTCCAGTTGGACAATCAGCGCTGGTACCCTTTGGAGTTACGGAAGGGGAAAGCAACTAAAGATAAGACACGGGATCAGGCAAAGATGGCACTACAATCTGGAGGACCGTCTACAAAAAGGAAAGATGATGAAGATGCTCCATATGAGTTTAAAAAAACACAGGCTTTTGAAGCATTTGAACTTGAAGATGTGCATCATAATAGTAGCTTTGAAATGGAAGAGGTGAATGAAGAGGACTGCCAGCAACTGGCTAATAAAGTAACTGGCAAGCTTTCTATTGATGATCAGTTTGACATCACAGAGTACAGTTCTAATGAAAAGCAGGATAGCCAGAGTATGAATGCTGAAGCAATGACATTAGTTACAACTGAGGTGGTAAAGCCATGTGGACGAATCAATGCTTGCATGGTTGTTGGGAAGGATACACTCTATATATATGGTGGGATGATGGAAATTGGTGATCAGGAATTAACTTTGGATGATCTTTACATTCTTGATCTCAATAAACTTGATGAGTGGAAATGCGTCATACAGGCTTCAAAAACTGAATGGGTAGACGCTAGTGATGATGAAGATGATGAAAGTAATGAAGATGGAGATATCAATGAAGGTGATAATGAGGAGGAAGAGGAGGATGGAAGTGAGGAAGAGAATGAATCCGACAAGGGCCCTTTGGGAGTAGAAGATGCTGCTGCTATACTAAGAGGAGAAGGTAGAAAGCTTCGCAGAAAGGAAAGACGGGCAAAAATAGATCAGATACGAGCTGAGCTGGGCCTTGCTGATTCACAACGTACACCACTGCCTGGAGAGACATTGAAGGAGTTTTTCTCACGCACCAACTTGTACTGGCAAATGGCTGCATATGAGCATACTCAACACACTGGAAAGGAACTGAGAAAAGATGGCTTTGACCTTGCAGAGAGTCGCTTCAAGGAACTAAAACCTGTACTTGATCAGTTAGCTAAGCTAGAGGCAGAGCAAAAGACAGAAGAAGAAGAGGATGCAAAAAACATGCTCAAGA

Fln Alignment:

Contig3684___DLYRYNAEKREWKLISSPNTPP-----PRSAHQAVAWKNSLFI---FGGE
C0PQW4______________DLWAFNVEEGEWKALPAP--PPESKLVPRGGPGLVVLDNKVWVIFGFGGK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1020			83	16	0.994512
1092	85			14	0.993533
1093		85	14		0.993533
1094			14	85	0.993533
1095			14	85	0.993533
1120		28		71	1.0
1136	14			85	0.993533
1137		14	85		0.993533
1139	85			14	0.993533
1199	85		14		0.993533
1328	22		77		0.999999
1329			77	22	0.999999
1330	77		22		0.999999
1331	77		22		0.999999
1373	77		22		0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
1898	1909	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain