SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3609

Length: 2758 nt

UniGene Fasta

>sp_v3.0_unigene3609
ATCAAATAAAACTCTATTGCGCCTTAAATTTTAAATTTGCGTCTTTTCCGCAGGGATTTACTGTGTGTGGGCTCTGGTTGGGTGTATGATGTCCTGAAAACCGCAGAATTAAAATTAAAACGACCTGTAACGGACTGGCTTGACTTTCAGATTGAAAACGCATTGGATTCGAAAGATCGACCTGCGCTCAAATCTTTGAGTAAAAAATAAACGGGAAGCCAAACACAAGGCAAAGCTAAAAAGCATTCTATGCATGGCATTGTCTGTCAAGGATGCCGTCTACAAAATCCAAACCACCCTACTCGACGGCGTCAAGACAGAAGCCCAATTGCACGCCGCCGCCAATCTCCTCTCAAATTCTGACTACGAAGACGTGGTGACAGAGAGGAACATCATCAATCTGTGCGGCTACCCTCTCTGCAGCAATAAACTGCCAGAATCGGAGGAGGAGCAACAGCAGCGCAAGAGAAAGGGACGCTACAGAATTTCCCTCAAGGACCACAAAGTGTACGACCTCCAGGAGACTTGGCTCTACTGCTCCACCCCCTGCCTCATACACAGCCGCACTTTTTCCGACTGTCTTCTGCCATCCGATCGCAACGCTGACGCTGCTCTCGAATCGAATTCAGACAGAATTCTCCACATTCTCGAAGCGGTCGGTTCTCTCTCCCTCGACGAGGCTCAAACTGAGAATGTTCCAGAAACCCCAAAGATTGTGCCAGAACGCCCCCAAGAAAATAACGTTCTTGAAGAATTTAAAGAGGGCAAGAAGAATGAGAACAATAACAATTCTGAGGAGAAATTCTCTTCCAAATTGCTGATACACGAGCAAGAAAATGACAGCGGTGAAAAAAGTGAGGCGGCTTTTGACTCTGCTGCTACAGGTCCTTCAGATGCCATTGAAGGTTATGTCCCTCGAGGAGAGCAACGGCGCCTTCATATTAAGCCTCCTGCAGATGGGTCCATTTCAAAATCGAACAAAAAAAAGGGGCCTAAGAAAAGTAAGAATACTCTCAAAAGAGGAGCTCCTAAAAATGAGTCTGATTTTCACAGCACTATAATAATTGGAGAACCACATGCTGATGTTGCTTCACATGGTACTACAAGTTCCATTGGTATTAGAGAAGAGTCTCTGAACCAAAAGGATAAAAAATCAGAAGGAAAACTAGATTTACAGAGTGAGAACAAGTCAGAAGTGATGAAATTGAGATCTGCCCTGAAGACACAAGGAGTAAAACAATTAAACCGAAGTGTTACATGGGCCGATGAAAAGAAATTGGAGCAAAGTGACCATATTGAAGATCCCGAGAAGAGGAATTTAGATAATTCAAACAAGTCATCAATTGTTGCTTTGCCTTCCTTGGAGAGCATGAGCCAGAGTGTAACATTTAGTAAGGATGCCGAGAGTTTGGAATCTTTTAGAGAAGAATTCAATGAGGAAAATGTTAAGGCTTCTCGGCTTGAAGCAGCAGAGGCTTTTGCAAATGCACTAACAGAAGCAGCAAATGCAGTTGCTTCAGGAGAGGTTGATGCCAGTGAAGCAGCTTTCAGGGCTGGAATTTGTATAGTTCCTGGTACAGATGATCAAGATCCCCAAAAGACCCAAATTGATGTAGAAAAATTGGGTTCAACACAACCTGTATGGACAAACTTACCTTCTACTGCAGATGAAGAAGCTTACAATGCACAGGAGTGCTGGTATGATGATCCCCCGGATGGCTTCAGCTTGGAGCTTTCTCCATTTGCAACTACATGGATTGCTTTAGACCAATGGATTACACGTTCATCAGTGGCTTACCTCTATGGTAGAGATGATAGTGATGCCGATGATTTTTCAACAGTCAATGGAAGAGGGTATCCTCACAAGATTGTTTCTGGAGGTGGCTTGTCAACTGAGATTGAAAGGACTGTAGCAAGTTGCATTTCACGTGCCTTGCCAGGAGTGGTTCAGTCTCTAAGGTTACCAACTCCAATTTCCTCTTTGGAGCAAGCTTTGGGGCGCTTCTTAAATACAATGACTTTCATTGATGCAATTCCACCATTTCGAACAAATCAATGGCGTGTGATTGTAATTCTGTTCTTAGATGCTTTATCAGTGCACCGTATCCCATCCCTGGGGTCGCAAGTAATGAACAAACGATCGCTGATACTTAAGGTTCTTGAAGCTGCAGAGATGACATATGAAGAATACAAGATAATGGAAGATTTATTGATACCACTTGGCCGGTGTCCTAGATTTTCATCCCAAAGTGGTGGCTGAATCTTTTACAACTATGTTGGATCAGTTTCAATCAGAAAATGTATTTAATGCCCTGATTTTGTTTTGCTTGGACATATTCGGTAAATATGATGAATAAGTTGATGGGAGGATTCCGTTTGAGAAATATAGATTTTAGGAAACATGTATAATTGGAGGTAAGTCTGCAACATCAAACTAATACTCTTCACATCTGACTGATATCCATCGTTGACGACTTCATACTCTTCTGAAAGGTCGTGTGACATTGTTTTCGTCACATTTATATCTTGTGGGCACCTAACTTTCGTTTATTTGATGTAGTACACAAAGCAATAGATGTTAACTTTTACACCGACTTACCTTCTAATGAGATATCTACTCAATGTAATGCTAATGTAATGTAAAGGTGCTTTTGAAATTAAAAGAATGATTGGAGCACCCAAATACGCCTGCCTTTTGGAATGGCTCTCCTGTGATAATGTTTTTTGTAATGTTTTAGCGTAATACATTTCTGTGGTA

Ace file of the UniGene sp_v3.0_unigene3609

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RPAP2_Rtr1 domain containing protein	-	-	3.0e-19	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-
Sma3	Protein of unknown function DUF408	IPR007308	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ23

Fln msg:

Fln protein: MALSVKDAVYKIQTTLLDGVKTEAQLHAAANLLSNSDYEDVVTERNIINLCGYPLCSNKLPESEEEQQQRKRKGRYRISLKDHKVYDLQETWLYCSTPCLIHSRTFSDCLLPSDRNADAALESNSDRILHILEAVGSLSLDEAQTENVPETPKIVPERPQENNVLEEFKEGKKNENNNNSEEKFSSKLLIHEQENDSGEKSEAAFDSAATGPSDAIEGYVPRGEQRRLHIKPPADGSISKSNKKKGPKKSKNTLKRGAPKNESDFHSTIIIGEPHADVASHGTTSSIGIREESLNQKDKKSEGKLDLQSENKSEVMKLRSALKTQGVKQLNRSVTWADEKKLEQSDHIEDPEKRNLDNSNKSSIVALPSLESMSQSVTFSKDAESLESFREEFNEENVKASRLEAAEAFANALTEAANAVASGEVDASEAAFRAGICIVPGTDDQDPQKTQIDVEKLGSTQPVWTNLPSTADEEAYNAQECWYDDPPDGFSLELSPFATTWIALDQWITRSSVAYLYGRDDSDADDFSTVNGRGYPHKIVSGGGLSTEIERTVASCISRALPGVVQSLRLPTPISSLEQALGRFLNTMTFIDAIPPFRTNQWRVIVILFLDALSVHRIPSLGSQVMNKRSLILKVLEAAEMTYEEYKIMEDLLIPLGRCPRFSSQSGG*

Protein Length: 670

Fln nts: ATCAAATAAAACTCTATTGCGCCTTAAATTTTAAATTTGCGTCTTTTCCGCAGGGATTTACTGTGTGTGGGCTCTGGTTGGGTGTATGATGTCCTGAAAACCGCAGAATTAAAATTAAAACGACCTGTAACGGACTGGCTTGACTTTCAGATTGAAAACGCATTGGATTCGAAAGATCGACCTGCGCTCAAATCTTTGAGTAAAAAATAAACGGGAAGCCAAACACAAGGCAAAGCTAAAAAGCATTCTATGC_-_ATGGCATTGTCTGTCAAGGATGCCGTCTACAAAATCCAAACCACCCTACTCGACGGCGTCAAGACAGAAGCCCAATTGCACGCCGCCGCCAATCTCCTCTCAAATTCTGACTACGAAGACGTGGTGACAGAGAGGAACATCATCAATCTGTGCGGCTACCCTCTCTGCAGCAATAAACTGCCAGAATCGGAGGAGGAGCAACAGCAGCGCAAGAGAAAGGGACGCTACAGAATTTCCCTCAAGGACCACAAAGTGTACGACCTCCAGGAGACTTGGCTCTACTGCTCCACCCCCTGCCTCATACACAGCCGCACTTTTTCCGACTGTCTTCTGCCATCCGATCGCAACGCTGACGCTGCTCTCGAATCGAATTCAGACAGAATTCTCCACATTCTCGAAGCGGTCGGTTCTCTCTCCCTCGACGAGGCTCAAACTGAGAATGTTCCAGAAACCCCAAAGATTGTGCCAGAACGCCCCCAAGAAAATAACGTTCTTGAAGAATTTAAAGAGGGCAAGAAGAATGAGAACAATAACAATTCTGAGGAGAAATTCTCTTCCAAATTGCTGATACACGAGCAAGAAAATGACAGCGGTGAAAAAAGTGAGGCGGCTTTTGACTCTGCTGCTACAGGTCCTTCAGATGCCATTGAAGGTTATGTCCCTCGAGGAGAGCAACGGCGCCTTCATATTAAGCCTCCTGCAGATGGGTCCATTTCAAAATCGAACAAAAAAAAGGGGCCTAAGAAAAGTAAGAATACTCTCAAAAGAGGAGCTCCTAAAAATGAGTCTGATTTTCACAGCACTATAATAATTGGAGAACCACATGCTGATGTTGCTTCACATGGTACTACAAGTTCCATTGGTATTAGAGAAGAGTCTCTGAACCAAAAGGATAAAAAATCAGAAGGAAAACTAGATTTACAGAGTGAGAACAAGTCAGAAGTGATGAAATTGAGATCTGCCCTGAAGACACAAGGAGTAAAACAATTAAACCGAAGTGTTACATGGGCCGATGAAAAGAAATTGGAGCAAAGTGACCATATTGAAGATCCCGAGAAGAGGAATTTAGATAATTCAAACAAGTCATCAATTGTTGCTTTGCCTTCCTTGGAGAGCATGAGCCAGAGTGTAACATTTAGTAAGGATGCCGAGAGTTTGGAATCTTTTAGAGAAGAATTCAATGAGGAAAATGTTAAGGCTTCTCGGCTTGAAGCAGCAGAGGCTTTTGCAAATGCACTAACAGAAGCAGCAAATGCAGTTGCTTCAGGAGAGGTTGATGCCAGTGAAGCAGCTTTCAGGGCTGGAATTTGTATAGTTCCTGGTACAGATGATCAAGATCCCCAAAAGACCCAAATTGATGTAGAAAAATTGGGTTCAACACAACCTGTATGGACAAACTTACCTTCTACTGCAGATGAAGAAGCTTACAATGCACAGGAGTGCTGGTATGATGATCCCCCGGATGGCTTCAGCTTGGAGCTTTCTCCATTTGCAACTACATGGATTGCTTTAGACCAATGGATTACACGTTCATCAGTGGCTTACCTCTATGGTAGAGATGATAGTGATGCCGATGATTTTTCAACAGTCAATGGAAGAGGGTATCCTCACAAGATTGTTTCTGGAGGTGGCTTGTCAACTGAGATTGAAAGGACTGTAGCAAGTTGCATTTCACGTGCCTTGCCAGGAGTGGTTCAGTCTCTAAGGTTACCAACTCCAATTTCCTCTTTGGAGCAAGCTTTGGGGCGCTTCTTAAATACAATGACTTTCATTGATGCAATTCCACCATTTCGAACAAATCAATGGCGTGTGATTGTAATTCTGTTCTTAGATGCTTTATCAGTGCACCGTATCCCATCCCTGGGGTCGCAAGTAATGAACAAACGATCGCTGATACTTAAGGTTCTTGAAGCTGCAGAGATGACATATGAAGAATACAAGATAATGGAAGATTTATTGATACCACTTGGCCGGTGTCCTAGATTTTCATCCCAAAGTGGTGGCTGA___ATCTTTTACAACTATGTTGGATCAGTTTCAATCAGAAAATGTATTTAATGCCCTGATTTTGTTTTGCTTGGACATATTCGGTAAATATGATGAATAAGTTGATGGGAGGATTCCGTTTGAGAAATATAGATTTTAGGAAACATGTATAATTGGAGGTAAGTCTGCAACATCAAACTAATACTCTTCACATCTGACTGATATCCATCGTTGACGACTTCATACTCTTCTGAAAGGTCGTGTGACATTGTTTTCGTCACATTTATATCTTGTGGGCACCTAACTTTCGTTTATTTGATGTAGTACACAAAGCAATAGATGTTAACTTTTACACCGACTTACCTTCTAATGAGATATCTACTCAATGTAATGCTAATGTAATGTAAAGGTGCTTTTGAAATTAAAAGAATGATTGGAGCACCCAAATACGCCTGCCTTTTGGAATGGCTCTCCTGTGATAATGTTTTTTGTAATGTTTTAGCGTAATACATTTCTGTGGTA

Fln Alignment:

Contig3609___MALSVKDAVYKIQTTLLDGVKTEAQLHAAANLLSNSDYEDVVTERNIINLCGYPLCSNKLPESXXXXXXRKRKGRYRISLKDHKVYDLQETWLYCSTPCLIHSRTFSDCLLPSDRNADAALESNSDRILHILEAVGSLSLDEAQTENVPETPKIVPERPQENNVLXXXXXXXXXXXXXXXXXXXXXXLLIHEQENDSGEKSEAAFDSAATGPSDAIEGYVPRGEQRRLHIKPPADGXXXXXXXXXXXXXXXNTLKRGAPKNESDFHSTIIIGEPHADVASHGTTSSIGIREESLNQKDKKSEGKLDLQSENKSEVMKLRSALKTQGVKQLNRSVTWADEKKLEQSDHIEDPEKRNLDNSNKSSIVALPSLESMSQSVTFSKDAESLESFREEFNEENVKXXXXXXXXXXXXXXXXXXXXXXXGEVDASEAAFRAGICIVPGTDDQDPQKTQIDVEKLGSTQPVWTNLPSTADEEAYNAQECWYDDPPDGFSLELSPFATTWIALDQWITRSSVAYLYGRDDSDADDFSTVNGRGYPHKIVSGGGLSTEIERTVASCISRALPGVVQSLRLPTPISSLEQALGRFLNTMTFIDAIPPFRTNQWRVIVILFLDALSVHRIPSLGSQVMNKRSLILKVLEAAEMTYEEYKIMEDLLIPLGRCPRFSSQSGG
B8LQ23______________MAPSVKDAVYKIQTTLLDGVKTEAQLHAAANLLSKSDYEDVVTERTIVNLCGYPLCSNKLPASEEQQQQRKRKGRYRISLKDHKVYDLQETWLYCSTPCLINSRTFSDCLLPPDRNADAALEWNSDRILHILEAVGSLSLDDAETENVSETPKNVPEPAPKKNVLEEFKEGRKNENNNNSEEKFSSELLIHEQENGSGEKILVAFDSSSAGPSDAIEGYVPQGEQRRLHLQPPADKSVSKSPKKKGPKKSKNSLKRGAPRKESDFSSTIIIGQPCADVALNGATSSIVISEETLNQKDQKSERKLDLQNENKSEVMKLRSALKTQGVKQLNRSVTWADEKKFEQSDHIEVLEKRTLDNSNTSSIVALHSLESTSQSATFGKDAESLESIRAEFNEANVKASRLEAAEVFAKALTEAANAVASGEVDASEAASKVGICIIPGTDDEDPQKTQNDVEKLDSTQPTWTSLPSTIDEEAYDARECWFDDPPDGFSLELSPFATMWMALDRWITCSSVAHLYGRDDSDADDFSTVNGREYPRKIVSGGGLSTEIERTVASCISRALPAVVQSLRLPTPISSLEQALGRFLNTMTFIDAIPPFRMNQWRVIVVLFLDALSVHHIPSLGPQIMNKRPLIHKVLEAAEMTYEEYKTMKELLIPLGRCPRFSSQSGG

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
424		66		33	0.997452
544	12	87			0.992554
763	11		88		0.923564
764		11	88		0.923564
765	11		88		0.923564
766		88		11	0.923564
767	88			11	0.923564
854	71		14		0.984337
858	87		12		0.992554
864		71		28	1.0
878			28	71	1.0
946			83	16	0.994512
947		83	16		0.994512
950		83	16		0.994512
960	28		71		1.0
961	14		85		0.993533
963		85	14		0.993533
964		85		14	0.993533
1063	90			10	0.90298
1091		10		90	0.90298
1135	14		14		0.984337
1139	25	25			0.995533
2115	33	66			0.997452
2116		66		33	0.997452
2117		66	33		0.997452
2118			33	66	0.997452
2193	83		16		0.994512
2194		83	16		0.994512
2258		15	84		0.999986
2497			83	16	1.0
2549		37	62		1.0
2563		42	57		1.0
2565	50			50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain