SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3473

Length: 3013 nt

UniGene Fasta

>sp_v3.0_unigene3473
TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGTGCGAAGAAGAAAGAAATTCTAGAGGTGTGGGATTCTGAGTGGTCGGACGATCGAATCTTCCCACAATATTTTGATTGTCTCCTCTTCTGGATTGTGGGGGGATAAAGTTCATTCTTATGATCTGCAGATTACCGCCGACCGAGTCCTGGGAAGGACAATGCGGAGCTGAGATCGGCAGGCCCTTTGCAGCGGCACGCCACGGAGTGTTGTTGTTCTGAGCTGCCACGGCGTTCATGCGAGAAAGAAAGATTTGCAGAGGTGGACTCATCAAAACCGGCCATTCTGGTTGCATGATTTTGACGGAAAATCAGTGGACATTGGTAGCCATAGAGTTTATTTGGGATCACTTTTGACTTCTTGCAGGCGTCACTTAGCCTCAAACTTTTTGGCCCAAGGTAGGAATCGTCTGTTCTGTTTTTAACAGAATTCTTTTTTTGCCCTCTTAAATCTTAGATTTATAGCTTAGTTTTTATACCTGAGACACTCTTGGAGTCTGGTCTGAAGGGTAAAACTCAAAATCCCCATTTGTTTTTGTGTAGACTTGGGTTGATTGAACCCTAATACCAAAATGGGTCAAACTGAACACCCATCCATCCAAACGAACAATCACGACTCTAATGGAGTGGCCGTCCAGATCCATCCATCACGTATACTTCCTGATTTTCTCCAGAGTGTCAATCTGAAATATGTCAAACTCGGCTATCATTATCTTATAACCCATCTCCTGACTCTGCTCTTGATCCCTCTCATGGTGGGTATGCTTCTTGAAGTGGGACGGATGAACCCGGAAGATATCTGGCAGCTCTGGATCCATTTACAGTTCAATCTCGTCAGTGTTCTTGTCTGTTTGGCCATTCTTGTTTTTGGGTGCACAGTCTATATGATGTCTCGCCCTCGACCTGTGTATCTTGTGGATTACTCCTGCTACAAGCCCCCTGAAAGCCTCAAAGTGAACTTCCAACGCTTTATGGAACACTCTGAGCTGTCGGGATATTTTCAAGATTCATCCTTGGAATTCCAGGCGAAGATACTGGAGCGATCGGGTTTAGGAGATAACACTTATCTTCCTGCTGCAGTGCATTATATTCCCCCTCGGCCCTCCATGGCCACAGCAAGAGAAGAGGCCGAGCAGGTCATGTATGGTGCCCTAGACAAGCTTTTTAAGAAAACGGGGTTGAAACCCAAGGATATCGGGATTCTTGTGGTGAACTGCAGTCTATTCAATCCAACTCCTTCACTCTCTGCTATGATTGTGAATAGGTATAAGTTGAGGGGGAACATTCGGAGCTTCAATTTAGGTGGAATGGGTTGTAGTGCAGGAGTTATTGCCATTGATCTTGCCAAGGATTTGTTACAAGTTCATAGAAGCACATATGCAATAGTTGTGAGCACAGAAAACATTACTCAGAATTGGTATTTTGGCAACAAAAAGTCAATGTTGATACCCAATTGCTTGTTTCGTGTTGGGGGAGCTGCAGTTCTTCTTTCAAATAAGAGCTCCGACCGTCGGCGAGCAAAGTACAAGCTTGTCCATGTTGTGAGAACTCATAAAGGAGCAGATGATAAAGCATTCAACTGTGTTTATCAGGAGCAAGATGAAGCTGGCAAGCTCGGTGTGTCATTATCCAAAGAACTTATGGCCATAGCAGGAGGAGCGTTGAAGACTAATATCACAACTCTGGGACCTCTTGTTCTTCCCATCAGCGAGCAATTGCTTTTCTTTGCTACCCTTGTTGGGAGAAAGGTCTTCAATATGAAGATCAAACCCTATATTCCAGATTTTAAGCTTGCGTTTGAGCATTTCTGTATTCATGCTGGAGGAAGAGCAGTGATTGATGAGCTTCAGAAGAACTTGCATCTCAAGCCAATACATGTAGAGGCTTCGAGGATGACTCTACATCGCTTTGGCAACACTTCCTCAAGCTCAATTTGGTATGAGCTCAGTTACATTGAGGCCAAAGGACGTATGCGAAAAGGCAATCGGATTTGGCAGATTGCATTTGGCAGTGGATTCAAGTGCAACAGTGCTGTTTGGCAAGCACTTCGAACAGTGAAATCACCGGCTGATAGTCCTTGGGCTGATTGCGTTGATCAATATCCAGTAAAATTGATGATAGAATGAGCAACTAGTCAAATGAGTTGAAACTCTAATACATCCAGTTCAACCTCAGATCTGCGTGTATCTCCTAGATATGTGTGCACTTTGGAGTTCTGCAATCTTAGTATCTTTTATTGGTCCCCATTTGAAGGTTTCTCACATGGTTTAGCTTTGATTTTTAATTTTCTGCACTTCCAGACTATTGTTTCTTCGAGCTGTGTATCCAGCCCTTGAATTTCCAAACTGTGCCACATTGCAAGCTTTAAGAGGGATTTTGATTTTTTATAGCTTTGCTCATGCAGACTTTGTAGGTAGGCTAGTAGCAGCATCAGGAAAGTTCATTGTTATTTGTATCAAATTCATTTGTGGGAATTGTTTCAATGGGCAATTCATGATATTGCCCCTTCACATTTCTCTCCAGAACTCCCATTCTTTGCAACTTTACTGAAATAGTTAGCTGAAAAATTTGTATCGTCAAAGTGCATGACTGTTGAACAATCGTATTTCAAACTAATCCTGTTTATGTGTTTTGCATTTACTTGATTGTCAAAGGTGATCTAGCCGATTACTTTCTAAAATGCAGTCATGTTAATGGAGCATGTGCAATCAACAAATGGGAATGCTTCCTGTGTAGTATCTGTTTCCTTCTCAATAACACCTTTCAGTTCAGAGACCTTAGTGTAGGACAATCCAGCTAATGAGGAGGTTTCCTGGTATTTTTCTTTGTAAGATCAATTACCTTTTCAAAATAGTGGTTTGTGGGTAGACAAGCAGCGGCAGTAGCTGATTTCATTATTCCTTTTTAAAGCAGCTCTACTGATATAAGTATCTGGATAGCTGACATCAGAAAGGAAGTCCTTGACTTTGAACGATTACA

Ace file of the UniGene sp_v3.0_unigene3473

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=2 Tax=Populus trichocarpa RepID=B9H0R8_POPTR	-	-	75%
FL-Next	sp=3-ketoacyl-CoA synthase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Sma3	Chromosome chr3 scaffold_8, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00036377001;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3		GO:0008415	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G19440.1	KCS4 3-ketoacyl-CoA synthase 4 chr1:6729119-6730669 FORWARD LENGTH=516	79%
RefSeq	Arabidopsis thaliana	NP_173376.1	3-ketoacyl-CoA synthase 4 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002305431.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LN49

Fln msg:

Fln protein: MGQTEHPSIQTNNHDSNGVAVQIHPSRILPDFLQSVNLKYVKLGYHYLITHLLTLLLIPLMVGMLLEVGRMNPEDIWQLWIHLQFNLVSVLVCLAILVFGCTVYMMSRPRPVYLVDYSCYKPPESLKVNFQRFMEHSELSGYFQDSSLEFQAKILERSGLGDNTYLPAAVHYIPPRPSMATAREEAEQVMYGALDKLFKKTGLKPKDIGILVVNCSLFNPTPSLSAMIVNRYKLRGNIRSFNLGGMGCSAGVIAIDLAKDLLQVHRSTYAIVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSSDRRRAKYKLVHVVRTHKGADDKAFNCVYQEQDEAGKLGVSLSKELMAIAGGALKTNITTLGPLVLPISEQLLFFATLVGRKVFNMKIKPYIPDFKLAFEHFCIHAGGRAVIDELQKNLHLKPIHVEASRMTLHRFGNTSSSSIWYELSYIEAKGRMRKGNRIWQIAFGSGFKCNSAVWQALRTVKSPADSPWADCVDQYPVKLMIE*

Protein Length: 519

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGTGCGAAGAAGAAAGAAATTCTAGAGGTGTGGGATTCTGAGTGGTCGGACGATCGAATCTTCCCACAATATTTTGATTGTCTCCTCTTCTGGATTGTGGGGGGATAAAGTTCATTCTTATGATCTGCAGATTACCGCCGACCGAGTCCTGGGAAGGACAATGCGGAGCTGAGATCGGCAGGCCCTTTGCAGCGGCACGCCACGGAGTGTTGTTGTTCTGAGCTGCCACGGCGTTCATGCGAGAAAGAAAGATTTGCAGAGGTGGACTCATCAAAACCGGCCATTCTGGTTGCATGATTTTGACGGAAAATCAGTGGACATTGGTAGCCATAGAGTTTATTTGGGATCACTTTTGACTTCTTGCAGGCGTCACTTAGCCTCAAACTTTTTGGCCCAAGGTAGGAATCGTCTGTTCTGTTTTTAACAGAATTCTTTTTTTGCCCTCTTAAATCTTAGATTTATAGCTTAGTTTTTATACCTGAGACACTCTTGGAGTCTGGTCTGAAGGGTAAAACTCAAAATCCCCATTTGTTTTTGTGTAGACTTGGGTTGATTGAACCCTAATACCAAA_-_ATGGGTCAAACTGAACACCCATCCATCCAAACGAACAATCACGACTCTAATGGAGTGGCCGTCCAGATCCATCCATCACGTATACTTCCTGATTTTCTCCAGAGTGTCAATCTGAAATATGTCAAACTCGGCTATCATTATCTTATAACCCATCTCCTGACTCTGCTCTTGATCCCTCTCATGGTGGGTATGCTTCTTGAAGTGGGACGGATGAACCCGGAAGATATCTGGCAGCTCTGGATCCATTTACAGTTCAATCTCGTCAGTGTTCTTGTCTGTTTGGCCATTCTTGTTTTTGGGTGCACAGTCTATATGATGTCTCGCCCTCGACCTGTGTATCTTGTGGATTACTCCTGCTACAAGCCCCCTGAAAGCCTCAAAGTGAACTTCCAACGCTTTATGGAACACTCTGAGCTGTCGGGATATTTTCAAGATTCATCCTTGGAATTCCAGGCGAAGATACTGGAGCGATCGGGTTTAGGAGATAACACTTATCTTCCTGCTGCAGTGCATTATATTCCCCCTCGGCCCTCCATGGCCACAGCAAGAGAAGAGGCCGAGCAGGTCATGTATGGTGCCCTAGACAAGCTTTTTAAGAAAACGGGGTTGAAACCCAAGGATATCGGGATTCTTGTGGTGAACTGCAGTCTATTCAATCCAACTCCTTCACTCTCTGCTATGATTGTGAATAGGTATAAGTTGAGGGGGAACATTCGGAGCTTCAATTTAGGTGGAATGGGTTGTAGTGCAGGAGTTATTGCCATTGATCTTGCCAAGGATTTGTTACAAGTTCATAGAAGCACATATGCAATAGTTGTGAGCACAGAAAACATTACTCAGAATTGGTATTTTGGCAACAAAAAGTCAATGTTGATACCCAATTGCTTGTTTCGTGTTGGGGGAGCTGCAGTTCTTCTTTCAAATAAGAGCTCCGACCGTCGGCGAGCAAAGTACAAGCTTGTCCATGTTGTGAGAACTCATAAAGGAGCAGATGATAAAGCATTCAACTGTGTTTATCAGGAGCAAGATGAAGCTGGCAAGCTCGGTGTGTCATTATCCAAAGAACTTATGGCCATAGCAGGAGGAGCGTTGAAGACTAATATCACAACTCTGGGACCTCTTGTTCTTCCCATCAGCGAGCAATTGCTTTTCTTTGCTACCCTTGTTGGGAGAAAGGTCTTCAATATGAAGATCAAACCCTATATTCCAGATTTTAAGCTTGCGTTTGAGCATTTCTGTATTCATGCTGGAGGAAGAGCAGTGATTGATGAGCTTCAGAAGAACTTGCATCTCAAGCCAATACATGTAGAGGCTTCGAGGATGACTCTACATCGCTTTGGCAACACTTCCTCAAGCTCAATTTGGTATGAGCTCAGTTACATTGAGGCCAAAGGACGTATGCGAAAAGGCAATCGGATTTGGCAGATTGCATTTGGCAGTGGATTCAAGTGCAACAGTGCTGTTTGGCAAGCACTTCGAACAGTGAAATCACCGGCTGATAGTCCTTGGGCTGATTGCGTTGATCAATATCCAGTAAAATTGATGATAGAATGA___GCAACTAGTCAAATGAGTTGAAACTCTAATACATCCAGTTCAACCTCAGATCTGCGTGTATCTCCTAGATATGTGTGCACTTTGGAGTTCTGCAATCTTAGTATCTTTTATTGGTCCCCATTTGAAGGTTTCTCACATGGTTTAGCTTTGATTTTTAATTTTCTGCACTTCCAGACTATTGTTTCTTCGAGCTGTGTATCCAGCCCTTGAATTTCCAAACTGTGCCACATTGCAAGCTTTAAGAGGGATTTTGATTTTTTATAGCTTTGCTCATGCAGACTTTGTAGGTAGGCTAGTAGCAGCATCAGGAAAGTTCATTGTTATTTGTATCAAATTCATTTGTGGGAATTGTTTCAATGGGCAATTCATGATATTGCCCCTTCACATTTCTCTCCAGAACTCCCATTCTTTGCAACTTTACTGAAATAGTTAGCTGAAAAATTTGTATCGTCAAAGTGCATGACTGTTGAACAATCGTATTTCAAACTAATCCTGTTTATGTGTTTTGCATTTACTTGATTGTCAAAGGTGATCTAGCCGATTACTTTCTAAAATGCAGTCATGTTAATGGAGCATGTGCAATCAACAAATGGGAATGCTTCCTGTGTAGTATCTGTTTCCTTCTCAATAACACCTTTCAGTTCAGAGACCTTAGTGTAGGACAATCCAGCTAATGAGGAGGTTTCCTGGTATTTTTCTTTGTAAGATCAATTACCTTTTCAAAATAGTGGTTTGTGGGTAGACAAGCAGCGGCAGTAGCTGATTTCATTATTCCTTTTTAAAGCAGCTCTACTGATATAAGTATCTGGATAGCTGACATCAGAAAGGAAGTCCTTGACTTTGAACGATTACA

Fln Alignment:

Contig3473___VAVQIHPSRILPDFLQSVNLKYVKXXXXXXXXXXXXXXXXXXXXXXXXEVGRMNPEDIWQLWIHLQFNLVSVLVCLAILVFGCTVYMMSRPRPVYLVDYSCYKPPESLKVNFQRFMEHSELSGYFQDSSLEFQAKILERSGLGDNTYLPAAVHYIPPRPSMATAREEAEQVMYGALDKLFKKTGLKPKDIGILVVNCSLFNPTPSLSAMIVNRYKLRGNIRSFNLGGMGCSAGVIAIDLAKDLLQVHRSTYAIVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSSDRRRAKYKLVHVVRTHKGADDKAFNCVYQEQDEAGKLGVSLSKELMAIAGGALKTNITTLGPLVLPISEQLLFFATLVGRKVFNMKIKPYIPDFKLAFEHFCIHAGGRAVIDELQKNLHLKPIHVEASRMTLHRFGNTSSSSIWYELSYIEAKGRMRKGNRIWQIAFGSGFKCNSAVWQALRTVKSPADSPWADCVDQYPVKL
Q9LN49______________VGVQIRQTRMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVISVEASQMNPDDLKQLWIHLQYNLVSIIICSAILVFGLTVYVMTRPRPVYLVDFSCYLPPDHLKAPYARFMEHSRLTGDFDDSALEFQRKILERSGLGEDTYVPEAMHYVPPRISMAAAREEAEQVMFGALDNLFANTNVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSYNLGGMGCSAGVIAVDLAKDMLLVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSRDKRRSKYRLVHVVRTHRGADDKAFRCVYQEQDDTGRTGVSLSKDLMAIAGETLKTNITTLGPLVLPISEQILFFMTLVVKKLFNGKVKPYIPDFKLAFEHFCIHAGGRAVIDELEKNLQLSPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMRRGNRVWQIAFGSGFKCNSAIWEALRHVKPSNNSPWEDCIDKYPVTL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
104	66			33	1.0
168		37		62	1.0
260	29		70		1.0
263	76			23	1.0
307		66		33	1.0
312		60		40	1.0
400	62	37			1.0
422	28			71	1.0
1153	33	66			1.0
1213		25		75	0.996473
1467	66		33		0.997452
2001	90		10		0.90298
2242	83			16	0.999991
2391		40		60	1.0
2491		20		80	0.995493
2562		14		85	0.993533
2594	50		50		1.0
2757	80		20		0.999996
2853	83			16	0.994512
2854	20			80	0.995493
2962	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain