SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3463

Length: 1474 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3463 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative wuschel homeobox protein WOX8/9 n=1 Tax=Picea abies RepID=D5LMH9_PICAB	-	-	0.0	49%
FL-Next	sp=WUSCHEL-related homeobox 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%
Sma3	Putative wuschel homeobox protein	-	-	5.629e-07	-

Source	Gene names
Sma3	At2g33880; GSVIVT00003020001; LOC_Os01g47710; LOC_Os07g34880; MtrDRAFT_AC174467g24v1; OSJNBa0039D04.15; OSJNBb0063G05.20; Os01g0667400; Os07g0533100; OsI_03193; OsJ_023594; OsJ_02944; POPTRDRAFT_276838; POPTRDRAFT_555728; S; T1B8.31; WOX13; WOX7; WOX9; wo

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	positive regulation of cell proliferation	GO:0008284	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Homeodomain	IPR001356	-	0.0	-
Sma3	Homeobox, conserved site	IPR017970	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q6X7J3

Fln msg:

Fln protein: MSSNKSWVRKFIRNPSDSSRQRTPQEGILSRDDESSTPDPKPRWNPKPEQVQILEEIFNSGKVNPPRAEIKRITTQLQEFGDVGEANVFYWFQNRKSRSKQKQRQQAAEMSRSSAESTKSDQSKPLPVTTTDSSTFHGTGESSSSAMPPASASFSTYQDNQIYRARMNEEVNINQRSYMPAFEAGRIMVNKETGHDSNYGISITILVNNREIEVPAGPINVRAVFGGNKVLVHSSGQPVLVNECGFTLQGLQHGAMYYLV*

Protein Length: 262

Fln nts: TCGGCTTCTCTTCGGCTTTTGAAGTAATTCTGGCCTAGTTTTGGTTTTGGTATTTGGCGTAGTTTTGGTATTTGGAATCTATTTCCAGTATAGTTTTGAAACTTGTATTGCAGAAACTCCCATCTCATTTTGGTATTTGGAATAGATTTACAGTACTTTTACCAGTATTGTTGTGATAAAGTATCCCAGGAGCACTGACAGCAAATTTGAAGTATTGCCTTGTGTCCTTGCGATTAACTATATCGGGTGTTAATTTCGACATTTTGTGGGCAGTCATCTTTCGTCTCACTGTGTTCAAA_-_ATGAGTTCGAATAAAAGTTGGGTCAGAAAGTTCATTCGGAACCCGTCAGATTCTTCCAGACAGAGGACACCTCAAGAAGGGATATTATCACGTGATGATGAGAGCAGCACACCAGATCCAAAGCCGAGATGGAATCCGAAGCCTGAACAGGTCCAGATTTTGGAAGAGATATTCAATTCTGGTAAGGTGAACCCTCCACGAGCGGAAATTAAAAGAATCACCACTCAGCTGCAAGAATTTGGAGACGTTGGGGAGGCCAATGTCTTCTACTGGTTCCAGAACCGAAAGTCCAGATCCAAACAAAAACAACGACAACAGGCTGCAGAGATGTCTAGATCTAGCGCGGAGAGCACTAAATCAGATCAGTCTAAGCCTTTGCCAGTCACTACAACAGATAGTTCGACCTTCCATGGCACTGGTGAATCCTCCTCTTCTGCTATGCCGCCTGCTTCAGCTTCATTTTCGACATATCAGGACAACCAAATTTATCGTGCTCGAATGAATGAAGAAGTGAATATTAACCAACGCAGTTACATGCCAGCATTCGAAGCCGGAAGAATCATGGTTAATAAAGAAACGGGCCACGATTCGAACTACGGCATATCGATAACTATATTAGTCAATAACAGGGAAATTGAAGTTCCAGCAGGACCAATCAACGTGAGGGCTGTGTTCGGAGGAAATAAAGTTTTGGTACACTCCTCGGGCCAGCCGGTGCTAGTAAATGAATGCGGATTCACGTTGCAAGGCCTGCAACATGGTGCTATGTATTACTTGGTGTGA___TTATGCTTTTTTTCGATCATGGATCAACTTTCTTAGTATGATTTGAAATTGCGTACAGCTGCCTGGAGATTTCAACTTCCACGATGGATCGTATTTCGGTTTATAATTATATTTGATAATTTGTGTGACTTGATAGTTAATATTCTCTGTCCCTTAGTTTTAATGGTCTTGAGCTCCCGCTAGAGAACCATATTCTGAACGACAGAATTTCATTCTGCACACATTATAAATATGCAAGGTTGTTTTGTATGCCTTAAAAATGCATAACGTCATCAGAGTGACAGAATTTCATCCTGCACCAATTACAAATATGCAAGGTTGTTTTGTATATCTTAAAAAGACATCTGTTTTAGCTATATATATCAAAAACACTTTGCTTTCAGCTATATATA

Fln Alignment:

Contig3463___SDSSRQRTPQEGILSRDDESSTPDPKPRWNPKPEQVQILEEIFNSGKVNPPRAEIKRITTQLQEFGDVGEANVFYWFQNXXXXXXXXXXXQAAEMSRSSAESTKSDQ----SKPLPVTTTDSSTFHGTGEXXXXXXXXXXXXXSTYQDNQIYRARMNEEVNINQRSYMPA-------FEAGRIMVNKETGHDSNYGI---SITILVNNREIEVPAGPINVRAVFGGNKVLVHSSGQPVLVNECGFTLQGLQHGAMYYLV
Q6X7J3______________SPTRHSRSPPS---SASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQRQLQAAAAAADATTNTCDQTMMVSNSLPHHSGSDLGFGGCSTSSNYLFASSSSSYGGGCDNQSNSGMENLLTMSGQMSYHEATHHHYQNHSSNVTSILCPSDQNSNFQYQQGAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHSLQHGEAYFLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain