SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3451

Length: 2044 nt

UniGene Fasta

>sp_v3.0_unigene3451
CAGGGCTTTGCAAGGCTTGGATAAATGAATTGCCTGGTGTCCTAAAACAAGCAAGATCAGGAGGAAGGGTGAAGAAGAAAGAAAGCGCTCACCATTCCAATTACCATGCCTCTAGCAATACCCAGAAACATCTGTGATGTGCGGATCTTACTCCTCATTGCAGCAGTCCTGTTCATCACCATCCAGATGCGGCTTTTTGCAACGCAGTCTGAGTATGCAGATCGTCTTGCAGCTGCGGTGGAAGCTGAAAATCATTGTACGAGTCAAATGCGACTACTGATTGATCAAATAAGCATTCAACAAGGGAAAATAGTTGCCGTTGAAGAGGCAAAGCAACGGTTGGAGGCAGAGTGCACACAACTTAGGAGTCTCGTTAAAGACCTCGAAAGAAGAGCAGTGAAAACACAGAATGGTGAAGGAAATGAGGAACCCATAGCAGCTGTTGTCATTATGGCTTGCAATCGTGCTGATTACTTGGAAAGAACAATTAAATCAATTCTAAAGTATCATGGACCTGTGGCTTCAAAGTTTCCGCTTTTCATATCACAGGATGGCCCAGATTATTCAGTGAGAAGCAAAGCTTTGAGATACACTCAGTTCAAATATATCCAGCACTTGGATTTTGAACCAGTACAAACTGAAAGGCCAGGAGAGTTGACTGCTTATTACAAAATAGCGAATCATTATAAATGGGCATTAGGTAAACTCTTTGATGAGCATAATTTCAAGCGGGTAATTATCTTGGAAGATGATATGGAGATTTCTGTTGACTTTTTTGAATATTTTGAAGTAGCAGCATCTTTACTTGAAAATGACAACACCCTTATGGCGGTTTCATCTTGGAATGACAATGGGCAGAAGCAGTTTGTTCAGGATGCTGAATTGCTCTATCGATCAGACTTCTTCCCTGGACTAGGGTGGATGCTGACAAAGACTGTGTGGGATGAGTTGGCTCCAAAATGGCCAAAAGCTTATTGGGATGACTGGATAAGATTAAAGGAAGTGCGTAAAGATCGACAGTTTATTCGTCCAGAAGTATGCAGAACATATAATTTCGGTGAGCATGGATCTAGTCTGGGACAGTTTTTCAGACAATATTTGGAGTCAATCAAGCTGAATAATGTCCCCGTTAAGTGGAAGTCAAAAGATCTGAGCTACCTGTCAGAGGCAAACTATCCAAAGTACTTCGGAAAACTTGTTTCAAGTGCAACACCCGTGTATGGGGAGGATGTTGTTCAAAAGGCATACAATATAGATGGTGATGTACGGATAGAGTATAAAGATCAGGGACATTTTGAACAGATTGCACGGAAGTTTGGGATCTTTGAAGAATGGAAGGATGGAATACCGAGGACTTCTTATAAAGGAGTAGTAGTGTTCAGATGGCAAACAGCAAGGCGGATATTTTTAGTTGGTCCAGAGGCGATGAAAGAACTTGGAATTGATCATTGAAAAATAGGTGGCCTGAATGGTTATCTATGGCAGAAGCCTTTGTATATTATCCTATAATTATTTGAAGTAGAAGATAGCTACTTCAGCCAGTCAAATCAGCTTGCACTAATTTTTAGGGCCATTCAACCCTTCTAAATATCAATTAATCTGAACGGTATCCTTCTTGAGAATCTTCCATTCAATTATATATTGAAGCACTGGGATTCTGTCATCATCCCCCGTAAATATTTAAAGTTGAAACAGAGACAAGGGAAAGGTAGTAATTCTCATTTTTATGTTCAAAGTGAGTCTCAGATATGCTGATAGCCATTTTTGGAATCTCTCGTACTTGCCAAAGCAGTGGGCTTCCTGAATTTTACCAGGCAATCATCGTCGTTTTTTATGAGTGGCCTGCAGAGCTTTTGTGTGATACAATATTATCATCCTAGTATTGGCAATATGATCAACTAGTTGAGCCAAGTTACATTAGTGGTTGCTATAACTTCAAAGCTTGAAAATCCAGTGATAACTTCCTTTGGTTATTTTATGTGTGGAGATAGATGCCAAACGAACTGCACTTCTTTATATAAATTCAATAAATAAGGAAATTTTT

Ace file of the UniGene sp_v3.0_unigene3451

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	N-acetylglucosaminyltransferase I n=7 Tax=Solanaceae RepID=Q8VX56_SOLTU	-	-	0.0	69%
FL-Next	sp=Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Sma3	N-acetylglucosaminyltransferase I	-	-	1.868e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.	EC:2.4.1.101	-	4.753e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	N-Glycan biosynthesis	00510	4.753e-19	%
Sma3	Various types of N-glycan biosynthesis	00513	4.753e-19	%
Sma3	Metabolic pathways	01100	4.753e-19	%

Source	Gene names
Sma3	At4g38240; CGL1; F20D10.360; F22I13.10; GNTI; GSVIVT00003980001; GSVIVT00008145001; GSVIVT00013374001; GSVIVT00014806001; GntI; MICPUCDRAFT_12696; MICPUCDRAFT_32201; MICPUN_68567; OJ1149_C12.27; OJ1282_E10.3; Os02g0832800; OsI_09579; OsJ_09008; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	GO:0003827	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	protein N-acetylglucosaminyltransferase activity	GO:0016262	Molecular Function	-
Sma3	protein N-linked glycosylation	GO:0006487	Biological Process	-
Sma3	N-glycan processing	GO:0006491	Biological Process	-
Sma3	hyperosmotic response	GO:0006972	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipocalin	IPR002345	-	0.0	-
Sma3	Glycosyl transferase, family 13	IPR004139	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38240.1	CGL1, CGL, GNTI alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative chr4:17932006-17935209 REVERSE LENGTH=444	68%
RefSeq	Arabidopsis thaliana	NP_849517.1	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002313578.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9XGM8

Fln msg:

Fln protein: MPLAIPRNICDVRILLLIAAVLFITIQMRLFATQSEYADRLAAAVEAENHCTSQMRLLIDQISIQQGKIVAVEEAKQRLEAECTQLRSLVKDLERRAVKTQNGEGNEEPIAAVVIMACNRADYLERTIKSILKYHGPVASKFPLFISQDGPDYSVRSKALRYTQFKYIQHLDFEPVQTERPGELTAYYKIANHYKWALGKLFDEHNFKRVIILEDDMEISVDFFEYFEVAASLLENDNTLMAVSSWNDNGQKQFVQDAELLYRSDFFPGLGWMLTKTVWDELAPKWPKAYWDDWIRLKEVRKDRQFIRPEVCRTYNFGEHGSSLGQFFRQYLESIKLNNVPVKWKSKDLSYLSEANYPKYFGKLVSSATPVYGEDVVQKAYNIDGDVRIEYKDQGHFEQIARKFGIFEEWKDGIPRTSYKGVVVFRWQTARRIFLVGPEAMKELGIDH*

Protein Length: 450

Fln nts: CAGGGCTTTGCAAGGCTTGGATAAATGAATTGCCTGGTGTCCTAAAACAAGCAAGATCAGGAGGAAGGGTGAAGAAGAAAGAAAGCGCTCACCATTCCAATTACC_-_ATGCCTCTAGCAATACCCAGAAACATCTGTGATGTGCGGATCTTACTCCTCATTGCAGCAGTCCTGTTCATCACCATCCAGATGCGGCTTTTTGCAACGCAGTCTGAGTATGCAGATCGTCTTGCAGCTGCGGTGGAAGCTGAAAATCATTGTACGAGTCAAATGCGACTACTGATTGATCAAATAAGCATTCAACAAGGGAAAATAGTTGCCGTTGAAGAGGCAAAGCAACGGTTGGAGGCAGAGTGCACACAACTTAGGAGTCTCGTTAAAGACCTCGAAAGAAGAGCAGTGAAAACACAGAATGGTGAAGGAAATGAGGAACCCATAGCAGCTGTTGTCATTATGGCTTGCAATCGTGCTGATTACTTGGAAAGAACAATTAAATCAATTCTAAAGTATCATGGACCTGTGGCTTCAAAGTTTCCGCTTTTCATATCACAGGATGGCCCAGATTATTCAGTGAGAAGCAAAGCTTTGAGATACACTCAGTTCAAATATATCCAGCACTTGGATTTTGAACCAGTACAAACTGAAAGGCCAGGAGAGTTGACTGCTTATTACAAAATAGCGAATCATTATAAATGGGCATTAGGTAAACTCTTTGATGAGCATAATTTCAAGCGGGTAATTATCTTGGAAGATGATATGGAGATTTCTGTTGACTTTTTTGAATATTTTGAAGTAGCAGCATCTTTACTTGAAAATGACAACACCCTTATGGCGGTTTCATCTTGGAATGACAATGGGCAGAAGCAGTTTGTTCAGGATGCTGAATTGCTCTATCGATCAGACTTCTTCCCTGGACTAGGGTGGATGCTGACAAAGACTGTGTGGGATGAGTTGGCTCCAAAATGGCCAAAAGCTTATTGGGATGACTGGATAAGATTAAAGGAAGTGCGTAAAGATCGACAGTTTATTCGTCCAGAAGTATGCAGAACATATAATTTCGGTGAGCATGGATCTAGTCTGGGACAGTTTTTCAGACAATATTTGGAGTCAATCAAGCTGAATAATGTCCCCGTTAAGTGGAAGTCAAAAGATCTGAGCTACCTGTCAGAGGCAAACTATCCAAAGTACTTCGGAAAACTTGTTTCAAGTGCAACACCCGTGTATGGGGAGGATGTTGTTCAAAAGGCATACAATATAGATGGTGATGTACGGATAGAGTATAAAGATCAGGGACATTTTGAACAGATTGCACGGAAGTTTGGGATCTTTGAAGAATGGAAGGATGGAATACCGAGGACTTCTTATAAAGGAGTAGTAGTGTTCAGATGGCAAACAGCAAGGCGGATATTTTTAGTTGGTCCAGAGGCGATGAAAGAACTTGGAATTGATCATTGA___AAAATAGGTGGCCTGAATGGTTATCTATGGCAGAAGCCTTTGTATATTATCCTATAATTATTTGAAGTAGAAGATAGCTACTTCAGCCAGTCAAATCAGCTTGCACTAATTTTTAGGGCCATTCAACCCTTCTAAATATCAATTAATCTGAACGGTATCCTTCTTGAGAATCTTCCATTCAATTATATATTGAAGCACTGGGATTCTGTCATCATCCCCCGTAAATATTTAAAGTTGAAACAGAGACAAGGGAAAGGTAGTAATTCTCATTTTTATGTTCAAAGTGAGTCTCAGATATGCTGATAGCCATTTTTGGAATCTCTCGTACTTGCCAAAGCAGTGGGCTTCCTGAATTTTACCAGGCAATCATCGTCGTTTTTTATGAGTGGCCTGCAGAGCTTTTGTGTGATACAATATTATCATCCTAGTATTGGCAATATGATCAACTAGTTGAGCCAAGTTACATTAGTGGTTGCTATAACTTCAAAGCTTGAAAATCCAGTGATAACTTCCTTTGGTTATTTTATGTGTGGAGATAGATGCCAAACGAACTGCACTTCTTTATATAAATTCAATAAATAAGGAAATTTTT

Fln Alignment:

Contig3451___CDVRILLLIAAVLFITIQMRLFATQSEYADRLAAAVEAENHCTSQMRLLIDQISIQQGKIVAVEEAKQRLEAECTQLRSLVKDLERRAVKTQNGEGNEEPIAAVVIMACNRADYLERTIKSILKYHGPVASKFPLFISQDGPDYSVRSKALRYTQFKYIQHLDFEPVQTERPGELTAYYKIANHYKWALGKLFDEHNFKRVIILEDDMEISVDFFEYFEVAASLLENDNTLMAVSSWNDNGQKQFVQDAELLYRSDFFPGLGWMLTKTVWDELAPKWPKAYWDDWIRLKEVRKDRQFIRPEVCRTYNFGEHGSSLGQFFRQYLESIKLNNVPVKWKSKDLSYLSEANYPKYFGKLVSSATPVYGEDVVQKAYNIDGDVRIEYKDQGHFEQIARKFGIFEEWKDGIPRTSYKGVVVFRWQTARRIFLVGPEAMKELGI
Q9XGM8______________CDLRFLLIPAAFMFIYIQMRLFQTQSQYADRLSSAIESENHCTSQMRGLIDEVSIKQSRIVALEDMKNRQDEELVQLKDLIQTFEKKGIAKLT-QGGQMPVAAVVVMACSRADYLERTVKSVLTYQTPVASKYPLFISQDGSDQAVKSKSLSYNQLTYMQHLDFEPVVTERPGELTAYYKIARHYKWALDQLFYKHKFSRVIILEDDMEIAPDFFDYFEAAASLMDRDKTIMAASSWNDNGQKQFVHDPYALYRSDFFPGLGWMLKRSTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNYTKYFSGLVRQARPIQGSDLVLKAQNIKDDVRIRYKDQVEFERIAGEFGIFEEWKDGVPRTAYKGVVVFRIQTTRRVFLVGPDSVMQLGI

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
611	16	83			0.994512
649		85		14	0.993533
698	16	83			0.994512
743		40		60	1.0
770		50		50	1.0
998	50		50		1.0
1268		11		88	0.923564
1269	11		88		0.923564
1271	88			11	0.923564
1405	80		20		0.995493
1473	83		16		0.994512
1474	83	16			0.994512
1479		16		83	0.994512
1484	83	16			0.994512
1485	16			83	0.994512
1598	88			11	0.923564
1599	88	11			0.923564
1600			11	88	0.923564
1602	88		11		0.923564
1604		11		88	0.923564
1607			88	11	0.923564
1608	88		11		0.923564
1609	88		11		0.923564
1611			88	11	0.923564
1617	11	88			0.923564
1624	88		11		0.923564
1626	22		77		0.999999
1664		10		90	0.90298
1668	90		10		0.90298
1670		90	10		0.90298
1675		90		10	0.90298
1676		90		10	0.90298
1677		90	10		0.90298
1680	90			10	0.90298
1681	90		10		0.90298
1682	90			10	0.90298
1707	72		27		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain