SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3409

Length: 2568 nt

UniGene Fasta

>sp_v3.0_unigene3409
AAGCGTGTGAAAACTTTCACAAATTTTCTTCGGATGAAAATGATGCTTCACTGGACACACTAATATTCTACCCACATGGGAAAAATCGATAATGTAAATATTTCATATTGTTGTATTTTCTCGAGGGAAAAACGCATCTCCATCCATCTGAGCCAAGGCGGTCAGTTCTCTCTGCGCCTACATTCTGTGAATCCCACATTGATTGTGTTGGTCTCGAGACCTACACGATTCTGATGTGGGTATTGCCCATATTTATACTTGGAGAATCGAATTAAACCTGAACGATCGAGCTGATTGATGGGGTCATGGGCATCTGTATCTCCAGGTCAAAAGTAGACACTTCGATCACTAGCACTGGCACCCAGTCTGCTGAAACTAAAAGTCCCGATGATATTGGCAAGCCATTGCCATCTTCCCAGACAGGTCCTTCTATTAGCACGACTAGTACAGAGAGCGTTCTCTCTACTCCTAGGTTAGAGGAGAAATTGAGAGTATCATCTCAGTTGTTGAAATTCCAATTCAATGAGCTGAAATCTGCCACCAGGAACTTTAGGCCAGAGAGCGTTCTCGGGGGAGGTGGGTTCGGCTATGTTTTCAAAGGTTGGATAGAAGAGAATGGGACAGCCGCCGTCAAGCCTGGCACTGGCCTCACTGTTGCAGTCAAGACACTCAACCCTGACGGGTTACAGGGTCACAAGGAATGGCTGGCAGAAGTCAACTTCCTTGGTGAGCTTCGCCATGCAAATCTGGTCAAACTCATTGGATATTGCATTGAAGAAGATCAGAGGTTGCTCGTGTATGAATATATGCCAAGGGGCAGTTTGGAAAATCACCTTTTCAGAAGGGCCCTGCCTCTCCCGTGGTCTACCAGGATGAAAATTGCATTGGGTGCAGCAAAGGGTCTGGAATTTCTTCATGGAGGGGCTGAAAGAGCAGTGATTTATCGAGATTTCAAGACGTCTAATATTCTCTTGGATTCAGATTATAATGCAAAGCTTTCTGACTTTGGGTTGGCTAGAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGCTATGCAGCTCCGGAGTATGTGATGACTGGACATTTGACATCCAAGAGTGATGTCTATAGCTTTGGTGTTGTTCTTCTTGAAATGTTAACTGGTCGAAGATCCATTGATAAGCATAGATCAAATGGGGAGCAGAACCTGGTGGAATGGGCTCGACCTTATCTGGTGGATAAAAGAAAGCTTTATCGTCTTGTAGATCCTCGTTTGAGTGGTCACTATTCCATTAAGGGTGCCCAAAAGGTTGCACAGTTAGCTCATTATTGCCTAAGTCGGGACCCTAAATCCAGACCTACAATGAGTGATGTTGTTGAGGTTCTCGCACCACTGTTAAGTTTGAAGGATACAGCAAGCTCATCCTTTAATTATCAAGCTTTGCAGTCACAACAACAAAATCACCATGCACACATGCCAAATGGAAATCGACTACGGTCTTCAAAGGATGGCAATGGAACAGCCGTTGTTAATGGTTCTCCTATGTTTGCACGTCAGAAATCTCCCAAACAAAATGGTAATGAAACATAGATGACTTCTTTTTCATTGTTTCTTCTATAACTGTAGTTTTTTTATCTTAAATTGCCAAGTGCACTGCAATCTTGTGAGGCTTCAGGTTCACTTTCTTATAGCTCAGAATTCTTAACAAACCCATTTCCAAAATTCATTACGAAGTTCGCTCACCTATTCCAAGAAGTCAATGGTCAGTTTGCACTGGCCATCCAAATACTGTGTGGTCTATTTCTACCTTCTGTTCTAGTAAGTTCGACTACCAGGTACCTTGTATCTCTACTCTGATACTGAGGTAAGAGAATCTGGTAGTGGAGCTGTTTGGGTGGACTATTTGGAGACAAGGTTGAGGTAGTATCTTGGACTTGCTTGGAGTCATAAAAGATACGAGAGTGTTTTCTATCTCTGGCTAATGTACTTTCTTGTTTCTGTTGATATTACTGAGCTCAAGTCCAATCTTGGTTTGTCTTTTTAATTGTAATGCTAATACTTGTCTTCGGTTCTCATGCCAGAACACAGCATTATCTGTGTTTAAGCTGAAGTTTCTGTAGGACAAGGAAACTTGTAGAAGGGCTGTAATCCTTTTCGTGCTATTTTCCTTTTGGTCTGGATTCCTCCTCTTGGTAGGAGTGGTTGGAGAATGCATCTTACATTATGTAAATTTGTTAAAGTACATTGTTTCCAGGGTTATTCACGGCCTATGCTCTTACAAGATGGAAGCTTTGTTGTCTTATGCCATGTGTTGCACTGCAGTTCTTTTTTTTAGTGTCTGGTAAGAATTGGAATACCCATGTCTTTGGTTCTGCAGCAGAAAATTTGCAACCACAATATAAGGGGTATGGTTGCAAATAGTTCATGTAATTATTAGTTTGTTGTACAAGGGTATTAAGCATGGCTTCCAATTCTTCTCTCATGGCACTTAAATTGTGGCCAGTTCTGAGGATAATGCATCTCATAATAATGAAAAGCTGCATTACCTTCTGCCTGTTTCTCA

Ace file of the UniGene sp_v3.0_unigene3409

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase-like protein n=1 Tax=Glycine max RepID=C6ZRY6_SOYBN	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15080.1	Protein kinase superfamily protein chr5:4886414-4888555 FORWARD LENGTH=493	67%
RefSeq	Arabidopsis thaliana	NP_197012.1	protein kinase family protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002311881.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg:

Fln protein: MGICISRSKVDTSITSTGTQSAETKSPDDIGKPLPSSQTGPSISTTSTESVLSTPRLEEKLRVSSQLLKFQFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGELRHANLVKLIGYCIEEDQRLLVYEYMPRGSLENHLFRRALPLPWSTRMKIALGAAKGLEFLHGGAERAVIYRDFKTSNILLDSDYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKSRPTMSDVVEVLAPLLSLKDTASSSFNYQALQSQQQNHHAHMPNGNRLRSSKDGNGTAVVNGSPMFARQKSPKQNGNET*

Protein Length: 431

Fln nts: AAGCGTGTGAAAACTTTCACAAATTTTCTTCGGATGAAAATGATGCTTCACTGGACACACTAATATTCTACCCACATGGGAAAAATCGATAATGTAAATATTTCATATTGTTGTATTTTCTCGAGGGAAAAACGCATCTCCATCCATCTGAGCCAAGGCGGTCAGTTCTCTCTGCGCCTACATTCTGTGAATCCCACATTGATTGTGTTGGTCTCGAGACCTACACGATTCTGATGTGGGTATTGCCCATATTTATACTTGGAGAATCGAATTAAACCTGAACGATCGAGCTGATTGATGGGGTC_-_ATGGGCATCTGTATCTCCAGGTCAAAAGTAGACACTTCGATCACTAGCACTGGCACCCAGTCTGCTGAAACTAAAAGTCCCGATGATATTGGCAAGCCATTGCCATCTTCCCAGACAGGTCCTTCTATTAGCACGACTAGTACAGAGAGCGTTCTCTCTACTCCTAGGTTAGAGGAGAAATTGAGAGTATCATCTCAGTTGTTGAAATTCCAATTCAATGAGCTGAAATCTGCCACCAGGAACTTTAGGCCAGAGAGCGTTCTCGGGGGAGGTGGGTTCGGCTATGTTTTCAAAGGTTGGATAGAAGAGAATGGGACAGCCGCCGTCAAGCCTGGCACTGGCCTCACTGTTGCAGTCAAGACACTCAACCCTGACGGGTTACAGGGTCACAAGGAATGGCTGGCAGAAGTCAACTTCCTTGGTGAGCTTCGCCATGCAAATCTGGTCAAACTCATTGGATATTGCATTGAAGAAGATCAGAGGTTGCTCGTGTATGAATATATGCCAAGGGGCAGTTTGGAAAATCACCTTTTCAGAAGGGCCCTGCCTCTCCCGTGGTCTACCAGGATGAAAATTGCATTGGGTGCAGCAAAGGGTCTGGAATTTCTTCATGGAGGGGCTGAAAGAGCAGTGATTTATCGAGATTTCAAGACGTCTAATATTCTCTTGGATTCAGATTATAATGCAAAGCTTTCTGACTTTGGGTTGGCTAGAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGCTATGCAGCTCCGGAGTATGTGATGACTGGACATTTGACATCCAAGAGTGATGTCTATAGCTTTGGTGTTGTTCTTCTTGAAATGTTAACTGGTCGAAGATCCATTGATAAGCATAGATCAAATGGGGAGCAGAACCTGGTGGAATGGGCTCGACCTTATCTGGTGGATAAAAGAAAGCTTTATCGTCTTGTAGATCCTCGTTTGAGTGGTCACTATTCCATTAAGGGTGCCCAAAAGGTTGCACAGTTAGCTCATTATTGCCTAAGTCGGGACCCTAAATCCAGACCTACAATGAGTGATGTTGTTGAGGTTCTCGCACCACTGTTAAGTTTGAAGGATACAGCAAGCTCATCCTTTAATTATCAAGCTTTGCAGTCACAACAACAAAATCACCATGCACACATGCCAAATGGAAATCGACTACGGTCTTCAAAGGATGGCAATGGAACAGCCGTTGTTAATGGTTCTCCTATGTTTGCACGTCAGAAATCTCCCAAACAAAATGGTAATGAAACATAG___ATGACTTCTTTTTCATTGTTTCTTCTATAACTGTAGTTTTTTTATCTTAAATTGCCAAGTGCACTGCAATCTTGTGAGGCTTCAGGTTCACTTTCTTATAGCTCAGAATTCTTAACAAACCCATTTCCAAAATTCATTACGAAGTTCGCTCACCTATTCCAAGAAGTCAATGGTCAGTTTGCACTGGCCATCCAAATACTGTGTGGTCTATTTCTACCTTCTGTTCTAGTAAGTTCGACTACCAGGTACCTTGTATCTCTACTCTGATACTGAGGTAAGAGAATCTGGTAGTGGAGCTGTTTGGGTGGACTATTTGGAGACAAGGTTGAGGTAGTATCTTGGACTTGCTTGGAGTCATAAAAGATACGAGAGTGTTTTCTATCTCTGGCTAATGTACTTTCTTGTTTCTGTTGATATTACTGAGCTCAAGTCCAATCTTGGTTTGTCTTTTTAATTGTAATGCTAATACTTGTCTTCGGTTCTCATGCCAGAACACAGCATTATCTGTGTTTAAGCTGAAGTTTCTGTAGGACAAGGAAACTTGTAGAAGGGCTGTAATCCTTTTCGTGCTATTTTCCTTTTGGTCTGGATTCCTCCTCTTGGTAGGAGTGGTTGGAGAATGCATCTTACATTATGTAAATTTGTTAAAGTACATTGTTTCCAGGGTTATTCACGGCCTATGCTCTTACAAGATGGAAGCTTTGTTGTCTTATGCCATGTGTTGCACTGCAGTTCTTTTTTTTAGTGTCTGGTAAGAATTGGAATACCCATGTCTTTGGTTCTGCAGCAGAAAATTTGCAACCACAATATAAGGGGTATGGTTGCAAATAGTTCATGTAATTATTAGTTTGTTGTACAAGGGTATTAAGCATGGCTTCCAATTCTTCTCTCATGGCACTTAAATTGTGGCCAGTTCTGAGGATAATGCATCTCATAATAATGAAAAGCTGCATTACCTTCTGCCTGTTTCTCA

Fln Alignment:

Contig3409___MGICISR-SKVDTSITSTGTQSAETKSPDDIGKPLPSSQTGPSISTTSTESVLSTPRLEEKLRVSSQLLKFQFNELKSATRNFRPESVLXXXXXXYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGELRHANLVKLIGYCIEEDQRLLVYEYMPRGSLENHLFRR-ALPLPWSTRMKIALGAAKGLEFLHGGAERAVIYRDFKTSNILLDSDYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKSRPTMSDVVEVLAPLLSLKDTASSSFNYQALQSQQQNHHAHMPNGNRLRSSKDGNGTAVVNGSPMFARQKSPKQNGNET
B8LKY1______________MGICVSRRSKVDTSITSTGTQSAETKNPNDIGKTLPTSQTGPSISTASTESIVSTPRLEEQLRVSSQLLKFTFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTASSSFNYQALQSQHQSQHSHMPNGIRLRSSKDSNGTAVANGSPMSAYHQSPKQNGNET

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
2282	14		85		0.993533
2283		85	14		0.993533
2284	14			85	0.993533
2318		25		75	0.996473
2549	85		14		0.993533
2550	14		85		0.993533
2560	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain