SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3342

Length: 1887 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3342

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Molybdopterin cofactor sulfurase, putative n=1 Tax=Ricinus communis RepID=B9S8P3_RICCO	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%
Sma3	Molybdopterin cofactor sulfurase, putative	-	-	2.917e-08	-

Source	Gene names
Sma3	AT4g37100; At4g37100; At5g51920; At5g66950; C7A10.260; GSVIVT00004344001; GSVIVT00004577001; GSVIVT00014738001; LOC_Os03g55704; LOC_Os12g40010; OSJNBa0079B15.16; Os03g0765800; Os12g0590900; OsI_13658; OsI_38943; OsJ_12708; PHYPADRAFT_149364; PHYPADRAFT_15

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66950.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein chr5:26733333-26735945 FORWARD LENGTH=870	45%
RefSeq	Arabidopsis thaliana	NP_201496.1	catalytic/ pyridoxal phosphate binding protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002307239.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6H1F2

Fln msg: Overlapping hits, possible frame ERROR between 986 and 982, your sequence is shorter than subject: 425 - 950

Fln protein: SPSNEAEAKHTLQNQTTDGKSRKSEYFDPGEKQETPQMNVTNVLRGSNGGVNLISEDEVGSSGRIDSWRFSKQSKLSLIVENAEGERDDSTPRRGELHLTDVFESTCGEITICDEDTKRLAPSAKGITSIANGSLMNGHAELGNHTEVGNKLEHAMYGSPKLCKTKENAIRRETEGDFRLLGRREAGRILCLDDMDSYSIGSISRRESFSGEEYGAAHDQDEEGMSDAELVEEQGWTEREPRICCKHLDHVDSLGLNKTTLRLRYLINWLVTSLLQLRHHGPDGGAALVRIYGPKIRYDRGSTLAFNLYNCDGVLLSPEIVQRLADxxxNIALSLGFLSHLCLIENNAELQEALDSASNSLCKSIVIGRCEGKKVSVQVEVVTASLGFLSNFEDVYRMWEFVAKFLDAGYCEANECVTQSGPSK*

Protein Length: 426

Fln nts: GCTCTCCCTCAAATGAGGCAGAGGCAAAGCATACTTTGCAGAACCAAACAACAGATGGAAAATCCCGCAAGTCTGAGTATTTTGATCCTGGGGAGAAACAGGAAACACCACAGATGAATGTGACTAATGTATTAAGAGGTTCAAATGGAGGAGTCAATTTGATTTCTGAGGATGAGGTGGGATCATCTGGAAGGATTGATTCTTGGAGGTTTTCTAAACAGAGCAAGCTTTCTCTCATCGTAGAGAATGCAGAGGGAGAAAGAGACGATTCTACTCCAAGACGAGGCGAGCTTCACTTGACAGATGTGTTTGAAAGTACATGTGGAGAAATAACAATCTGTGATGAGGATACAAAGAGGCTGGCACCCTCTGCAAAAGGGATTACTTCCATCGCCAATGGTAGCCTAATGAACGGCCATGCAGAGCTTGGAAATCATACTGAGGTTGGAAACAAGCTGGAACATGCCATGTATGGAAGTCCTAAACTATGCAAGACCAAGGAAAATGCAATAAGAAGAGAAACCGAGGGAGATTTCAGACTTTTAGGTAGGAGAGAGGCAGGAAGGATTTTGTGTTTAGACGACATGGATAGCTATAGCATTGGCAGCATTAGCAGAAGGGAGTCATTTAGTGGAGAGGAATATGGAGCTGCACATGATCAAGATGAGGAGGGAATGAGTGATGCTGAATTAGTGGAGGAGCAAGGTTGGACTGAAAGAGAACCGAGGATTTGTTGCAAGCATCTGGATCATGTGGACAGTTTGGGTCTTAACAAAACGACTTTAAGACTTAGATACCTCATCAATTGGCTGGTTACTTCCTTACTACAATTAAGACATCATGGACCGGATGGTGGAGCTGCTCTTGTGCGCATATATGGACCAAAGATCAGGTACGATCGAGGTTCAACATTGGCTTTCAATTTGTATAACTGCGATGGAGTCTTATTGTCTCCTGAAATTGTACAGAGACTCGCAGACxxxxxxxxxAACATAGCACTCAGTCTGGGGTTTCTCAGTCATCTCTGTTTGATAGAAAATAATGCAGAACTGCAAGAAGCCCTGGATTCAGCTAGCAACTCTTTATGTAAATCCATAGTGATTGGGCGGTGTGAAGGCAAGAAAGTATCAGTTCAAGTCGAAGTTGTAACTGCATCGCTTGGTTTTTTGTCTAATTTTGAAGATGTGTACAGGATGTGGGAGTTTGTGGCCAAGTTCCTTGATGCAGGTTATTGTGAAGCAAATGAATGCGTCACCCAGTCTGGACCATCTAAATGAGAGGTCACACTATCTTGGATGTGTTTTGCAGAGGAAGAGATGGATTTTATAAACTCCCAATTAGAGTAGCACCTTTTATCAGACTAGAAAGGAGGAGCCTTTGATTATAGCTTTCTGCTTCTTGCTTCTATCAATTAGAGCATGCAAAAATGTTTCGCTCTTGCCAACAGCTACAGATCAATGCTTCAGGTTAGCAATGGATTCTCTTCTGCACCCTATTAGTTTTAAGAACATATGTGACCCAGTTCTTGCTTATTCTAAAATTTCTTACTGGGGTGTGCTCTTCTTTGCACCCTGCCTGCCTGATATTTATTAGAAAGTCCATTAAATTCCACATTGATAGTCCTTTTCCAGATGCAGAGGCAATAGAAAACATATGCCAGGCTTTCCTTTTCTTTGTTTTCATTGCATCTACCATCTTGGCGGGCATTGTTCATGATGAAGCATTATTTGTCATATGATATGTTAATCTACTGTTATTCTTTCACATTTTGGATTTTCTCTAAACTAAGATGTTTGAACTCCCAATGTTTAGAATGATTGAAGACAATTTTCTTCGAATTGTATTTATATAGTGATAATGAGCCAGTCAGTAGTCCACTGCATTCCGTT

Fln Alignment:

Contig3342___KTKENAIRRETEGDFRLLGRREA-----GRILCLDDMDSYSIGSISRRESFSGE--------------EYGAAHDQDEEGMSDAELVEEQGWTEREPRICCKHLDHVDSLGLNKTTLRLRYLINWLVTSLLQLRHHGP--DGGAALVRIYGPKIRYDRGSTLAFNLYNCDGVLLSPEIVQRLADxxNIALSLGFLSHLCLIENNAELQEALDSASNSLCKSIVIGRCEGKKVSVQVEVVTASLGFLSNFEDVYRMWEFVAKFLDAGYCEAN
F6H1F2______________ETKESAIRRETEGEFRLLGRREGNRFAGGRFFGLEETDLAA--SMGRRVSFTMEDNRKESLSQFLEPGEVSLTTLGDDESMSEGDYGDGLEWGRREPEIICRHLDHINMLGLNKTTLRLRYLINWLVTSLLQLRLSSSDLDMGVPLVQIYGPKIKYERGAAVAFNVRNSHGGMIHPEVVQRLAExxGISLGIGFLSHIRIVDSPKQHRGGLDPEDTALCKSMANCRQDGKDMFFRVEVVTASLSFLTNFEDVYKMWAFVAKFLNSSFVEGD

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
504	75			25	0.996473
505	75		25		0.996473
506			25	75	0.996473
702	10	90			0.90298
747	11		88		0.923564
813	10		90		0.90298
814	10			90	0.90298
816	90		10		0.90298
817		90		10	0.90298
1082	33			66	1.0
1203		60		40	1.0
1231			20	80	0.995493
1233			20	80	0.995493
1374		80	20		0.995493
1376			20	80	0.995493
1380		16		83	0.994512
1381		16		83	0.994512
1382	80			20	0.995493
1384	80		20		0.995493
1388			20	80	0.995493
1392	20		80		0.995493
1398	20			80	0.995493
1802	25	75			0.996473
1805	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain