SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3336

Length: 3469 nt

UniGene Fasta

>sp_v3.0_unigene3336
CACTGCTTAAGCAGTGGTATCAACGCAGAGTACACGGGGAGAGTGATTGCGGGGGCTACTGATTATCAGCCAAAGCAAGCAGGGAAAAACAAAGAATCTCATTGAAATCCCACTATAAAATGGCGTAGAATTCTAGATCTCAGCAGTCAGTCATGGCGAACTCAAAACACTGGGTGTTGTTGCTGGCTCTCGTAACAATATGCGCAGGAATAGGGAGGGTAAACTCTTGGAAAAGTGAAGAATTTCGAAACTGTCACCATACTCCGTTCTGCAAGCAAGGACGAGCAAGAAAGCCCGGAACATCGAACCTCAGAGCTATTGATGTTGCTCTGCAAGATGGGCAGCTCACTGCAAAACTCGTTCCCAAAATCCTAAACCCTGAGGCCGAGGCCGAAAATGCATTAATTCTCCGCATGTCAGTTTACCCAGATGGCATCCTGAGATTCAAGGTGGATGAGGACGAGGGGAAAGACGGGAAGAGAAAGAGGTTCGAGGTACCTGACGTCTTGGCCGAAGATCTGGATGACAGGCGCCTCTGGCTGCAGAGAATCGAGCATGAGCAGGATGGGGTCTCGTCCGTTTATCTCACCACTGGCTACGAGGCCGTGCTGCAGCACGATCCGCTGGAAATCTATGTTAGAAGAGGTAAGCATGAACGTCTTGTCTCGTTTAATAGCAAAGGGCTTTTTCATTTTGAGCAACTTAGAGATAAGAATGAGGAAGAGAATTGGGATGAGCATTTTCGCAGCCATACCGATTCCAGACCCCATGGCCCCCAATCTATTAGCCTCGATGTTTCTTTTCATGGGGCCAAACATGTGTATGGGATACCCGAACATGCCACTGGCCTTGCCCTCAAGCCAACTAGAGGTCCTGATGTCGATTCCGAGCCCTACCGCTTATTCAATCTTGACGTCTTTGAATACATTAGCGAATCGCCCTTTGGACTTTACGGTTCCATTCCTTTCATGCTGTCTCACAGCAAGGAATACACAACTGGTTTTTTCTGGCTAAATGCGGCTGAAATGCAAATAGATGTTCTGGCTCCCGGGTGGGATGGAAACTCTGCTTCTGACTCCGATGCCAATGCTGATGGAATTCATACCATGTGGATGGCCGAGAGCGGTATTGTGGATGGATTCTTTTTCATCGGTCCCGGCCCCAAGGATGTTATGAGGCAATACGCCAGTCTTACAGGAACTTCTGCCATGCCACAGCTTTTTGCTACTGCTTATCACCAGTGTCGCTGGAATTACAGAGACGAAGAAGATGTATCCAATGTGGATGCCAAGTTTGATGAGTTTGATATACCGTATGATGTTCTCTGGCTTGACATTGAACACACTGATGGGAAGAGATACTTTACATGGGACAATTTGCTCTTTCCGAATCCAGAAGAGATGCAGAATAAGCTCATGGCAAAAGGCCGGCATATGGTGACCATTGTTGATCCTCATATTAAGAGGGATGATGGTTTTCCGCTGCACAAGGAAGCGACTCAAAAGGGGTATTATGTTAAGAATGCTCATGGTAACGACTTCGATGGCTGGTGTTGGCCAGGTGCATCGTCTTATTTGGATATGCTGAATCCAGAAATCAGGTCATGGTGGGCTGACAAATTTTCTCTTAGCAGCTATAAGGGTTCAACACCATCGTTGTACATATGGAATGATATGAATGAACCTTCTGTATTCAATGGTCCAGAGCTAACGATGCCCAGAGATGCTCTTCACTTTGGAGATGTTGAGCATCGCGAAGTTCATAATGCTTATGGATATTTCTTTCATATGGGCTCTGCTGATGGTCTCTTGAAACGAGGAGGTGGGAATGACAGGCCATTTGTTTTATCACGAGCATTTTTTGCTGGGAGCCAGAGGGTGGGCCCAGTTTGGACGGGAGACAATACAGCCGATTGGGACCAGCTGAGGGTTTCTGTTCCAATGCTGTTAACTCTTGGTCTCACTGGAATGGCTTTTTCTGGTGCCGATGTTGGGGGTTTTTTTGGAAATCCTGAGCCTGAATTACTACTTCGATGGTATCAGTTAGGTGCATATTACCCTTTTTTTAGAGGTCACGCACATCATGACACCAAGAGGAGAGAGCCCTGGCTATTTGGGGAGCGGAACACTGCCTTGATTCGGGAGGCCATCCATATTCGTTATGCACTGCTTCCATACTATTACACTTTATTTAGAGAGGCTAATGTCAGAGGAGTTCCAGTTATGCGTCCACTGTGGATAGAATTCCCTGGTGACGAATCAGTATTTTCCAATGATGAGGCATTCATGGTTGGAGGCAGTTTGTTGGTCCATGGTATTTACAGTGCGGGAGCTACTTCAGTGTCTGTCTACTTGCCAGGATCCCAATATTGGTATGACATCAGAACTGGAGCTGTTTATACTGGAGGTAACCACTATAAGTTGGATGTCTCAGATGAAAGCATACCTGCTTTTCAGCAAGGTGGCACAATTATTCCTCGTAAGGATAGGTTTCGCCGCAGCTCCACTCAGATGGCTAGTGACCCGTACACCCTAGTCATAGCATTAAATCATACACTGGAGGCTGAAGGCGAGCTCTATGTGGATGATGGGAGAAGTTATGATTATAAAAAAGGGGCTTACATCCATCGGCGATTTGTGTTCTCAAATGGTAGACTTACATCAGTGAACCTTGCGCCTGATAAGTCAGACAAGAAACTGTTCCCTTCCAACTGTGTCATAGAGAGAATTATACTATTGGGATTAAAGTCACAAATCTCAAAGGGAGGAAAAACTGCTATTGTCGAACCATCAAATCAGAGAGTTGACATAGAATCCGGCCCACTAATGCTGCGAAAAGGATCATATCCTAGTGCAGTGAATGTCCGGAAACCAAATGTACGGATTGATGAGGATTGGTCGATAAAAATTTTCTAGAGCATTTTCACAGGCATTTAAATGATTTCAATTATTTTGAGATCAACTAAATTAATGCTGTTTTCCAATGATGGGAGTGCCAGCAAGTTCTTTTTATGCCAAAATTGTTTCCTTGGCTTTTTGATATGCTACTTTTCTTCTGGTTAAGGAGAGCAGTGCAGGTCTGTTTATGTTTATTCACGTGTTCAAAATGCACCTGCCAAGCATGGGCAGGGTCAGAACTCCAGCCTTCTCATTTTCATCTCTCTATAATTGTAGTGTTGGTAGGTATTTGAAACTTGGCACTACAAATAGGATCCAATCCCAAATATGAAATCAGCCTCGATGTGAAATAATTAACATGATCTGATCTGGTAATTCAAGATCTGACATACTTCCATAACTTGAATTAGATACGGAAATTAAGATGACAGTAAATGTGATGTGTACCTTTTAATTAAAAATTGTAGATTTACAGAGTTGCTCCTGCTTTTTTGTATGATTTTCAGGAAAAACTGCACGCAATTTCAAAGTTCTGATGCAGACTTAATTTATTGAAGTGGTTGATGCTTTCT

Ace file of the UniGene sp_v3.0_unigene3336

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Neutral alpha-glucosidase ab, putative n=1 Tax=Ricinus communis RepID=B9STU2_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	Glucosidase II alpha subunit	-	-	3.622e-09	-

Source	Gene names
Sma3	Agl4; At5g63840; CHLREDRAFT_128630; EXG1; GLH1; GSVIVT00002676001; GSVIVT00013914001; GSVIVT00038818001; LOC_Os03g11720; MICPUCDRAFT_27057; MICPUN_84555; OSTLU_429; Os03g0216600; OsI_10536; OsJ_09923; Ot08g02780; PHATRDRAFT_50836; PHYPADRAFT_187728; POPTR

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	alpha-glucosidase activity	GO:0004558	Molecular Function	-
Sma3	glucosidase activity	GO:0015926	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	cellulose biosynthetic process	GO:0030244	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 31	IPR000322	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3		IPR015706	-	-
Sma3	Tryptophan/tyrosine permease	IPR018227	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G63840.1	RSW3, PSL5 Glycosyl hydrolases family 31 protein chr5:25545056-25548922 FORWARD LENGTH=921	66%
RefSeq	Arabidopsis thaliana	NP_201189.1	alpha 1,3-glucosidase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002310537.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKI6

Fln msg:

Fln protein: MANSKHWVLLLALVTICAGIGRVNSWKSEEFRNCHHTPFCKQGRARKPGTSNLRAIDVALQDGQLTAKLVPKILNPEAEAENALILRMSVYPDGILRFKVDEDEGKDGKRKRFEVPDVLAEDLDDRRLWLQRIEHEQDGVSSVYLTTGYEAVLQHDPLEIYVRRGKHERLVSFNSKGLFHFEQLRDKNEEENWDEHFRSHTDSRPHGPQSISLDVSFHGAKHVYGIPEHATGLALKPTRGPDVDSEPYRLFNLDVFEYISESPFGLYGSIPFMLSHSKEYTTGFFWLNAAEMQIDVLAPGWDGNSASDSDANADGIHTMWMAESGIVDGFFFIGPGPKDVMRQYASLTGTSAMPQLFATAYHQCRWNYRDEEDVSNVDAKFDEFDIPYDVLWLDIEHTDGKRYFTWDNLLFPNPEEMQNKLMAKGRHMVTIVDPHIKRDDGFPLHKEATQKGYYVKNAHGNDFDGWCWPGASSYLDMLNPEIRSWWADKFSLSSYKGSTPSLYIWNDMNEPSVFNGPELTMPRDALHFGDVEHREVHNAYGYFFHMGSADGLLKRGGGNDRPFVLSRAFFAGSQRVGPVWTGDNTADWDQLRVSVPMLLTLGLTGMAFSGADVGGFFGNPEPELLLRWYQLGAYYPFFRGHAHHDTKRREPWLFGERNTALIREAIHIRYALLPYYYTLFREANVRGVPVMRPLWIEFPGDESVFSNDEAFMVGGSLLVHGIYSAGATSVSVYLPGSQYWYDIRTGAVYTGGNHYKLDVSDESIPAFQQGGTIIPRKDRFRRSSTQMASDPYTLVIALNHTLEAEGELYVDDGRSYDYKKGAYIHRRFVFSNGRLTSVNLAPDKSDKKLFPSNCVIERIILLGLKSQISKGGKTAIVEPSNQRVDIESGPLMLRKGSYPSAVNVRKPNVRIDEDWSIKIF*

Protein Length: 922

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCAGAGTACACGGGGAGAGTGATTGCGGGGGCTACTGATTATCAGCCAAAGCAAGCAGGGAAAAACAAAGAATCTCATTGAAATCCCACTATAAAATGGCGTAGAATTCTAGATCTCAGCAGTCAGTC_-_ATGGCGAACTCAAAACACTGGGTGTTGTTGCTGGCTCTCGTAACAATATGCGCAGGAATAGGGAGGGTAAACTCTTGGAAAAGTGAAGAATTTCGAAACTGTCACCATACTCCGTTCTGCAAGCAAGGACGAGCAAGAAAGCCCGGAACATCGAACCTCAGAGCTATTGATGTTGCTCTGCAAGATGGGCAGCTCACTGCAAAACTCGTTCCCAAAATCCTAAACCCTGAGGCCGAGGCCGAAAATGCATTAATTCTCCGCATGTCAGTTTACCCAGATGGCATCCTGAGATTCAAGGTGGATGAGGACGAGGGGAAAGACGGGAAGAGAAAGAGGTTCGAGGTACCTGACGTCTTGGCCGAAGATCTGGATGACAGGCGCCTCTGGCTGCAGAGAATCGAGCATGAGCAGGATGGGGTCTCGTCCGTTTATCTCACCACTGGCTACGAGGCCGTGCTGCAGCACGATCCGCTGGAAATCTATGTTAGAAGAGGTAAGCATGAACGTCTTGTCTCGTTTAATAGCAAAGGGCTTTTTCATTTTGAGCAACTTAGAGATAAGAATGAGGAAGAGAATTGGGATGAGCATTTTCGCAGCCATACCGATTCCAGACCCCATGGCCCCCAATCTATTAGCCTCGATGTTTCTTTTCATGGGGCCAAACATGTGTATGGGATACCCGAACATGCCACTGGCCTTGCCCTCAAGCCAACTAGAGGTCCTGATGTCGATTCCGAGCCCTACCGCTTATTCAATCTTGACGTCTTTGAATACATTAGCGAATCGCCCTTTGGACTTTACGGTTCCATTCCTTTCATGCTGTCTCACAGCAAGGAATACACAACTGGTTTTTTCTGGCTAAATGCGGCTGAAATGCAAATAGATGTTCTGGCTCCCGGGTGGGATGGAAACTCTGCTTCTGACTCCGATGCCAATGCTGATGGAATTCATACCATGTGGATGGCCGAGAGCGGTATTGTGGATGGATTCTTTTTCATCGGTCCCGGCCCCAAGGATGTTATGAGGCAATACGCCAGTCTTACAGGAACTTCTGCCATGCCACAGCTTTTTGCTACTGCTTATCACCAGTGTCGCTGGAATTACAGAGACGAAGAAGATGTATCCAATGTGGATGCCAAGTTTGATGAGTTTGATATACCGTATGATGTTCTCTGGCTTGACATTGAACACACTGATGGGAAGAGATACTTTACATGGGACAATTTGCTCTTTCCGAATCCAGAAGAGATGCAGAATAAGCTCATGGCAAAAGGCCGGCATATGGTGACCATTGTTGATCCTCATATTAAGAGGGATGATGGTTTTCCGCTGCACAAGGAAGCGACTCAAAAGGGGTATTATGTTAAGAATGCTCATGGTAACGACTTCGATGGCTGGTGTTGGCCAGGTGCATCGTCTTATTTGGATATGCTGAATCCAGAAATCAGGTCATGGTGGGCTGACAAATTTTCTCTTAGCAGCTATAAGGGTTCAACACCATCGTTGTACATATGGAATGATATGAATGAACCTTCTGTATTCAATGGTCCAGAGCTAACGATGCCCAGAGATGCTCTTCACTTTGGAGATGTTGAGCATCGCGAAGTTCATAATGCTTATGGATATTTCTTTCATATGGGCTCTGCTGATGGTCTCTTGAAACGAGGAGGTGGGAATGACAGGCCATTTGTTTTATCACGAGCATTTTTTGCTGGGAGCCAGAGGGTGGGCCCAGTTTGGACGGGAGACAATACAGCCGATTGGGACCAGCTGAGGGTTTCTGTTCCAATGCTGTTAACTCTTGGTCTCACTGGAATGGCTTTTTCTGGTGCCGATGTTGGGGGTTTTTTTGGAAATCCTGAGCCTGAATTACTACTTCGATGGTATCAGTTAGGTGCATATTACCCTTTTTTTAGAGGTCACGCACATCATGACACCAAGAGGAGAGAGCCCTGGCTATTTGGGGAGCGGAACACTGCCTTGATTCGGGAGGCCATCCATATTCGTTATGCACTGCTTCCATACTATTACACTTTATTTAGAGAGGCTAATGTCAGAGGAGTTCCAGTTATGCGTCCACTGTGGATAGAATTCCCTGGTGACGAATCAGTATTTTCCAATGATGAGGCATTCATGGTTGGAGGCAGTTTGTTGGTCCATGGTATTTACAGTGCGGGAGCTACTTCAGTGTCTGTCTACTTGCCAGGATCCCAATATTGGTATGACATCAGAACTGGAGCTGTTTATACTGGAGGTAACCACTATAAGTTGGATGTCTCAGATGAAAGCATACCTGCTTTTCAGCAAGGTGGCACAATTATTCCTCGTAAGGATAGGTTTCGCCGCAGCTCCACTCAGATGGCTAGTGACCCGTACACCCTAGTCATAGCATTAAATCATACACTGGAGGCTGAAGGCGAGCTCTATGTGGATGATGGGAGAAGTTATGATTATAAAAAAGGGGCTTACATCCATCGGCGATTTGTGTTCTCAAATGGTAGACTTACATCAGTGAACCTTGCGCCTGATAAGTCAGACAAGAAACTGTTCCCTTCCAACTGTGTCATAGAGAGAATTATACTATTGGGATTAAAGTCACAAATCTCAAAGGGAGGAAAAACTGCTATTGTCGAACCATCAAATCAGAGAGTTGACATAGAATCCGGCCCACTAATGCTGCGAAAAGGATCATATCCTAGTGCAGTGAATGTCCGGAAACCAAATGTACGGATTGATGAGGATTGGTCGATAAAAATTTTCTAG___AGCATTTTCACAGGCATTTAAATGATTTCAATTATTTTGAGATCAACTAAATTAATGCTGTTTTCCAATGATGGGAGTGCCAGCAAGTTCTTTTTATGCCAAAATTGTTTCCTTGGCTTTTTGATATGCTACTTTTCTTCTGGTTAAGGAGAGCAGTGCAGGTCTGTTTATGTTTATTCACGTGTTCAAAATGCACCTGCCAAGCATGGGCAGGGTCAGAACTCCAGCCTTCTCATTTTCATCTCTCTATAATTGTAGTGTTGGTAGGTATTTGAAACTTGGCACTACAAATAGGATCCAATCCCAAATATGAAATCAGCCTCGATGTGAAATAATTAACATGATCTGATCTGGTAATTCAAGATCTGACATACTTCCATAACTTGAATTAGATACGGAAATTAAGATGACAGTAAATGTGATGTGTACCTTTTAATTAAAAATTGTAGATTTACAGAGTTGCTCCTGCTTTTTTGTATGATTTTCAGGAAAAACTGCACGCAATTTCAAAGTTCTGATGCAGACTTAATTTATTGAAGTGGTTGATGCTTTCT

Fln Alignment:

Contig3336___EENWDEHFRSHTDSRPHGPQSISLDVSFHGAKHVYGIPEHAT--GLALKPTRGPDVDSEPYRLFNLDVFEYISESPFGLYGSIPFMLSHSKEYTT-GFFWLNAAEMQIDVLAPGWDGNSASDSDANADGIHTMWMAESGIVDGFFFIGPGPKDVMRQYASLTGTSAMPQLFATAYHQCRWNYRDEEDVSNVDAKFDEFDIPYDVLWLDIEHTDGKRYFTWDNLLFPNPE--EMQNKLMAKGRHMVTIVDPHIKRDDGFPLHKEATQKGYYVKNAHGNDFDGWCWPGASSYLDMLNPEIRSWWADKFSLSSYKGSTPSLYIWNDMNEPSVFNGPELTMPRD------------------------------------------------ALHFGDVEHREVHNAYGYFFHMGSADGLLKRGGGNDRPFVLSRAFFAGSQRVGPVWTGDNTADWDQLRVSVPMLLTLGLTGMAFSGADVGGFFGNPEPELLLRWYQLGAYYPFFRGHAHHDTKRREPWLFGERNTALIREAIHIRYALLPYYYTLFREANVRGVPVMRPLWIEFPGDESVFSNDEAFMVGGSLLVHGIYSAGATSVSVYLP-GSQYWYDIRTGAVYTGGNHYKLDVSDESIPAFQQGGTIIPRKDRFRRSSTQMASDPYTLVIALNHTLE-----AEGELYVDDGRSYDYKKGAYIHRRFVFSNGRLTSVNLAPDKSDKK------------LFPSNCVIERIILLGLKSQIS
B8LKI6______________KSNGDVLFNSSYGSLVFKDQYLELTTGLPSTASLYGLGENTQPEGIKIAP-------KESYTLYTTDISAINLNTD--LYGSHPFYMDVRNGGTSHGVLLMNSNGMDVF-----YTGNALT------------YKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAMPYWAFGFHQCRWGYQNVSDITNVVDNYNKSQIPLDVIWNDDDHMDAAKDFTLDPVNYPEHKLRPFLDRIHANGMRYVVLIDPGIAINTSYGTFQRGMADDVFIMH-DGAPFLGQVWPGAVYFPDFLNPKTVNFWADE--ISRFHSMVPVDGLWIDMNEVSNFCSGKCTVPTNRSCPGTGLPWECCLDCTNITATQWDVPPYKINASGAGAPLGFKTIATSSVHYNGILEYDAHSLYGFSQAIATHKAL--QNLLNKRPFVLTRSTFVGSGSYAAHWTGDNKATWEDLRYSISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLHSKRQELYLW-DSVAKSARKALGLRYRLLPYLYTLNYDAHTTGAPIARPLFFSFPQDPETYGVTKQFLLGPGVLVSPVLYNSTTSVNAYFPKGSWYNLNDMTMAVKSNGQYVTLQAPMDTINVHVYEGMILPMQ-RGGLTSTAARMTPFTLIVAFPLGFESTGGNAKGHLFLDGGEDVEMK----------IAEGKSTYIDFSAESDGKKARLMSHVQNGAYALSQGWVVEKLIILGLPSSHS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
735		33		66	0.997452
774		66		33	0.997452
795		25		75	0.996473
844	80		20		0.995493
851		20		80	0.995493
1077		80		20	0.999996
1101		20		80	0.999996
1136	88		11		0.923564
1143		87		12	0.992554
1224		16		83	0.994512
1451	88			11	0.923564
3276		95		5	0.997749
3392	25		75		0.996473
3393		25		75	0.996473
3396			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain