SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3301

Length: 1950 nt

UniGene Fasta

>sp_v3.0_unigene3301
ATTTAATCCAATTTATTTGGACGGAGAAACCCAGATCAGGGTAAGGGAATTCGGCACTGAAATCTTTGCGAGAGGAACCAAGAATAAAGGAATCGAGAAGAAAGTGAAATCAATGCGATGCAATAATTAGATGTTGAAGTAGTATCGCGGTTTTTGTAAAGGGCGAATCTCGTTTCTCGATCGAAATTTCGACAGGGCTTGCTATATTTTCAGTTTCTCGTCATAGGCATAAGAAGGGAAGAACTTTCACTTGATCCATATAAATGAGTACTGTATGTCCGTTTGCAAAGGCATTCAGCAAAGATGAGAACCACTCTGGAGAAAAGATCCAGGAAGAATGTGAGGAAGATTTAAATGATCAGCCTGACAATGATAAGAAAGGGAGGGATAATCAGTCAGATGGAGCCACTCCGAAATGCCCTTTTGGATACGACTCTCATTCATTTAAGCTGGGACCATTCAGCTGTGTAATTTGTCGAGCTTTACTTTATCAAAGCAGCAAATGTGTACCTTGTGGTCATAAATTTTGCAAAGCATGCATTTTGCGCTTTAGTGATTGCCCTTTATGCGGAGCGGACATTGATAAAGTTGAACCTGATCCCGATCTTCAAGAACTTGTTGACCAATTCATTGAAGGGCATGCTAGAATTAAGAGAACAATACCTAATTCAGATGACATAAAAGGACAGGAAGATGAAAGACAATTCAAGAATGTTACTTACGAGGATGTTTCTTTGGAAAGAGGCAGCTTCCTGCTACAGCATGCAATGAGAGCATTTCAAGCCCAAAATTTAGAGAGTGCAAAGTCAAGGCTGACTTTATGTGCAGAGGATATCCATGAACAGATGGAAAGATCTGGAAGCACTCCAGAGTTATGTTCTCAACAGGGAGCTGTTCTTGGCATCCTTGGGGATTGTTGCCGGGCAATGGGAGATGTCAGTGGTGCAGTCAAGCACTATAATGATTCTATCGAGTCTCTTTCAAAATTATCTACTGATGATGCTGAGGTTGTGCATGCACGTTCGGTGTCTCTCAACAAAATTGGAGATCTTAAGTACTATGACAATGATCTTTTAGCGTCACAATTGTACTATTCTCAGGCATTGGATGTTCGTAGAAAGGCCATTAAAGATTTTACAAAACTATCCTCACAGATAATTGACATTGCAGTTTCATTGGCTAAGGTTGCTGATGTAAACAGAGCCCTAGGTAATGAAAAAGTTGCTATAGAGAGGTTTCAAGAAGCAGTGAAATGCTTGGAATGCCTTTCATTGCAGCCTGATGAGGAGCCATCTCTAGAAAATAAGCGGCAATCTGTTTTAGAGTTTCTTCATGGTCAGCTCAAGGAGTGTCAAAATACGGCCCCTGCTGGAGAAAACTGAAATAAGCTGCTGTTTGAATATTCATCCTGAAGCTGTGAATGAAGAGTTCTTGAATGTGGCTACATGCAACAGTGGGAATAAGTATACTGGAGTAGAGAATATATCTGAACTTGTTATTGGCCGATCATTTGGTTGTGCTTGTTTTTAAGAGTACAAAATATCTACGAAGTACCTAAGCAGCAAATGACTGAGAATCGCTATTAATTTCTCAGTTGGAAAAAAACTGCCATAGGGGTAGACCTGTAGTATCCAATATTGTTCATGTTTTCATACCATTCCTTTATTGTTTTATATTTTTGTAGCATCCCTCGATAGCTTATATAGACAGTTTGCCCAGTGCCATGTATATAGTCAATGTTTGCAGACCATGGAAATCTATGCGTGATTAAAATTGAATATGTTTGTGTAGACAAAAAATGTCACATTATTGTAAAATCTGGATACACTTGATCACAGGATCGATGTAACTCACTGCTAGTCAGAGGTTTAGATATACACATTATGTAATAAAAAAAATCTGAAATGCTCTGTCTAAATCATTTGTTTGATTTGTATTCTCCTAGTGTAG

Ace file of the UniGene sp_v3.0_unigene3301

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc ion binding protein [Arabidopsis thaliana] gb\|AAK95259.1\|AF410273_1 AT3g54360/T12E18_50 [Arabidopsis thaliana] emb\|CAB81801.1\| RING finger-like protein [Arabidopsis thaliana] gb\|AAM63273.1\| RING finger-like protein [Arabidopsis thaliana] gb\|AAN18187.	-	-	0.0	57%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	59%

Source	Gene names
Sma3	AT3G54360; At3g54360; GSVIVT00033956001; OJ1695_H09.11; Os01g0104100; Os02g0795300; OsI_00037; OsI_09273; OsJ_00033; OsJ_08709; P0436E04.13; PHYPADRAFT_115595; POPTRDRAFT_647379; POPTRDRAFT_708416; RCOM_0622470; T12E18_50;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Domain of unknown function DUF239	IPR004314	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54360.1	zinc ion binding chr3:20128570-20131581 REVERSE LENGTH=405	57%
RefSeq	Arabidopsis thaliana	NP_191004.1	zinc ion binding protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002297702.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: I1KFL7

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MSTVCPFAKAFSKDENHSGEKIQEECEEDLNDQPDNDKKGRDNQSDGATPKCPFGYDSHSFKLGPFSCVICRALLYQSSKCVPCGHKFCKACILRFSDCPLCGADIDKVEPDPDLQELVDQFIEGHARIKRTIPNSDDIKGQEDERQFKNVTYEDVSLERGSFLLQHAMRAFQAQNLESAKSRLTLCAEDIHEQMERSGSTPELCSQQGAVLGILGDCCRAMGDVSGAVKHYNDSIESLSKLSTDDAEVVHARSVSLNKIGDLKYYDNDLLASQLYYSQALDVRRKAIKDFTKLSSQIIDIAVSLAKVADVNRALGNEKVAIERFQEAVKCLECLSLQPDEEPSLENKRQSVLEFLHGQLKECQNTAPAGEN*

Protein Length: 374

Fln nts: ATTTAATCCAATTTATTTGGACGGAGAAACCCAGATCAGGGTAAGGGAATTCGGCACTGAAATCTTTGCGAGAGGAACCAAGAATAAAGGAATCGAGAAGAAAGTGAAATCAATGCGATGCAATAATTAGATGTTGAAGTAGTATCGCGGTTTTTGTAAAGGGCGAATCTCGTTTCTCGATCGAAATTTCGACAGGGCTTGCTATATTTTCAGTTTCTCGTCATAGGCATAAGAAGGGAAGAACTTTCACTTGATCCATATAA_-_ATGAGTACTGTATGTCCGTTTGCAAAGGCATTCAGCAAAGATGAGAACCACTCTGGAGAAAAGATCCAGGAAGAATGTGAGGAAGATTTAAATGATCAGCCTGACAATGATAAGAAAGGGAGGGATAATCAGTCAGATGGAGCCACTCCGAAATGCCCTTTTGGATACGACTCTCATTCATTTAAGCTGGGACCATTCAGCTGTGTAATTTGTCGAGCTTTACTTTATCAAAGCAGCAAATGTGTACCTTGTGGTCATAAATTTTGCAAAGCATGCATTTTGCGCTTTAGTGATTGCCCTTTATGCGGAGCGGACATTGATAAAGTTGAACCTGATCCCGATCTTCAAGAACTTGTTGACCAATTCATTGAAGGGCATGCTAGAATTAAGAGAACAATACCTAATTCAGATGACATAAAAGGACAGGAAGATGAAAGACAATTCAAGAATGTTACTTACGAGGATGTTTCTTTGGAAAGAGGCAGCTTCCTGCTACAGCATGCAATGAGAGCATTTCAAGCCCAAAATTTAGAGAGTGCAAAGTCAAGGCTGACTTTATGTGCAGAGGATATCCATGAACAGATGGAAAGATCTGGAAGCACTCCAGAGTTATGTTCTCAACAGGGAGCTGTTCTTGGCATCCTTGGGGATTGTTGCCGGGCAATGGGAGATGTCAGTGGTGCAGTCAAGCACTATAATGATTCTATCGAGTCTCTTTCAAAATTATCTACTGATGATGCTGAGGTTGTGCATGCACGTTCGGTGTCTCTCAACAAAATTGGAGATCTTAAGTACTATGACAATGATCTTTTAGCGTCACAATTGTACTATTCTCAGGCATTGGATGTTCGTAGAAAGGCCATTAAAGATTTTACAAAACTATCCTCACAGATAATTGACATTGCAGTTTCATTGGCTAAGGTTGCTGATGTAAACAGAGCCCTAGGTAATGAAAAAGTTGCTATAGAGAGGTTTCAAGAAGCAGTGAAATGCTTGGAATGCCTTTCATTGCAGCCTGATGAGGAGCCATCTCTAGAAAATAAGCGGCAATCTGTTTTAGAGTTTCTTCATGGTCAGCTCAAGGAGTGTCAAAATACGGCCCCTGCTGGAGAAAACTGAAATAAGCTGCTGTTTGAATATTCATCCTGAAGCTGTGAATGAAGAGTTCTTGAATGTGGCTACATGCAACAGTGGGAATAAGTATACTGGAGTAGAGAATATATCTGAACTTGTTATTGGCCGATCATTTGGTTGTGCTTGTTTTTAAGAGTACAAAATATCTACGAAGTACCTAAGCAGCAAATGACTGAGAATCGCTATTAATTTCTCAGTTGGAAAAAAACTGCCATAGGGGTAGACCTGTAGTATCCAATATTGTTCATGTTTTCATACCATTCCTTTATTGTTTTATATTTTTGTAGCATCCCTCGATAGCTTATATAGACAGTTTGCCCAGTGCCATGTATATAGTCAATGTTTGCAGACCATGGAAATCTATGCGTGATTAAAATTGAATATGTTTGTGTAGACAAAAAATGTCACATTATTGTAAAATCTGGATACACTTGATCACAGGATCGATGTAACTCACTGCTAGTCAGAGGTTTAGATATACACATTATGTAATAAAAAAAATCTGAAATGCTCTGTCTAAATCATTTGTTTGATTTGTATTCTCCTAGTGTAG

Fln Alignment:

Contig3301___MSTVCPFAKAFSKDENHSGEKIQEECEEDLNDQPDNDKKGRDNQSDGAT--PKCPFGYDSHSFKLGPFSCVICRALLYQSSKCVPCGHKFCKACILRFSDCPLCGADIDKVEPDPDLQELVDQFIEGHARIKRTIPNSDDIKGQEDERQFKNVTYEDVSLERGSFLLQHAMRAFQAQNLESAKSRLTLCAEDIHEQMERSGSTPELCSQQGAVLGILGDCCRAMGDVSGAVKHYNDSIESLSKLSTDDAEVVHARSVSLNKIGDLKYYDNDLLASQLYYSQALDVRRKAIKDFTKLSSQIIDIAVSLAKVADVNRALGNEKVAIERFQEAVKCLECLSLQPDEEPSLENKRQSVLEFLHGQLKECQNTAPA
I1KFL7______________MTPVCPFVKASRPDDNNASKK---SGENSMKHQVESESKGKKEVNDSASTSPKCPFGYDSHSFKIGPLSCTVCQALLFDTSKCVPCSHVFCKACILRFKDCPLCGADIVKIEPDANLQGVVDHFIEGHARIKRSVSSD---KGEE-ATESKKVIYEDVSLERGSFLVQQAMRAFRAQNLESAKSRLNLCAEDIRDQLEKVGNTSELCSQLGAVLGMLGDCCRAMGDASSAVAYFEESVQFLSKLPKDDLEITHTLSVSLNKIGDLKYYDEDLQAARSYYFKSLNVRRDVVKHNSNVPSQVLDVAVSLAKVADVDRNLGDEKLATDGFQEAIDLLESLTLK-SEASGLEQRRQSVLDFLRSQLPDKQEQAEA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
152	14			85	0.993533
154			14	85	0.993533
155			14	85	0.993533
273	11	88			0.923564
402	90		10		0.90298
949	88		11		0.923564
1600	10		89		0.999919
1645		87		12	0.999964
1810		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain