SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3245

Length: 3062 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene3245
TCATTGGTAAATATTCAAGCATAATATGGACACCACAAAGGAACTTGGACTGACCAGACCCGGGTGGGTGAAAATCAGCGTGTTTTTTTGTCAGGGTAAAAGGAAAGAGAGAAATAATATACAGAGCACAGTTTGCTTAGGGTTAGTTGATTGGTGCGGAGGGAATGAATACTAAGTCCCAAGGGCGCTGGTTGCTTCTTTACTTGAAGTTGGTTGCAGCAGCTCACAAATCTCTCTTGGGCAGGAATCTTCCTTCCATTCTTATAATAGTGAGTGGCGGAAAGGTAAAGGATAGGTAAAGGATATTTGGCCGGCATTAAAGTTGCAGGATCTGATACCAATACTTACAGAGAATCAGAAAACTAGTAAGGGCATGGATTTCAGCATCCTATAAATCCAACTCTGCCCAATTCATTTCGAATTCAAATCGTTTCATAATTCTGATACCTTCAAGGTACATATTGCATCATAATTATGTATTTTTAGAGGAGCTTCTTTCAGTTCGATGGTAAATAATAGTTTTGCAGACTTTCCTTCATATGGTTTTGGATGGAGGTTTATTCAGGTCCAAACCCCCAAAATATTTGAGGTTGGCGTTTGATCAAAGGGTTTTTAAATCTCTCTCCATGCTATTGAAATAAGTTGTTTGGGACTGGGAAATTGTTGCCCAATTATTTCTGGGTATTGGTGTGGCTATGACTATAGCTATGGAGCACCCAATTCAGGACATTCTCCGAATAAATAAATTGACAATGTCAATGCCGATAAGGAGTCTCTGCATTATTGGTAGTAATATCATCATTGTTTCCTGACGTTTAGTAAAGAAGATGCTTGTTTTCTTCTCTGCCACATCTAAGTGTTAGTATCAGGGCAAAAGTTCAAACCCAAATCCCCAAAATCAACACTAGTTGCTTAGTGGAAGTAAGGGGAATATTATAAGGTCAAGAAGAAAGCTCTATGGCTGAGGAGCGCAGGCTGCGTTCGTTGGAAGAGCTGCCAACCCATCTGCTTGAGGAGATATTGAGCAGTGGACAACTGAGTGCTGCAGACTTGGCGAGGTTGGAGGCATCCTGCTATACGTTCCGGGCGTCATATGGGAATGGGCATGGGTTTGTGACATATAGAGGAGGTGGAGGGTTGAAGTCCATGCCGGAGCTGGCAGCGTTTCAGTCATGTCTTGCGGATAGGATATTCTCGGCGATGCCGTTGTCTTGCCAGACCGAGCTTGTGAACCGATGCAGAGGGAATTGGAAGCTCGTTTTGAGGTTTCTGCAATCTGTGCACCAAGCCTTTGCCTCGGTGGACACTCCAAAAGGCAATGTCCAAGTTACCACTGGAAAATATCACACGCTTCTGGTTGAAGATGGGTCATTGTATACATGTGGATCAAGTATATGTGGAGTTCTGGGGCATGGGCCAGAAATCACTCAGTGTGGGGCATTGACTCGGGTTGAATTTCCCTTGGGTTTGAGCGTGGCTCAAGTATCAGGCTCTCATAATCATGCTGCTCTTGTGACTCAGAATGGAGAAGTTTTTACGTGGGGAGATAACTCTTCTTTTTGTTGTGGCCATGGAGAAGTCGGGTGTGTTATTTTCAAACCTACACGTGTTGAAGCTCTCAAGGGGATCTTTTGCAAGCAGGTTGCAACAGGTCTCAGTTTCACTGTCATTCTTACAAGGCATGGCCAAGTTTACACATGCGGCAGTAACTCACATGGTCAGTTGGGGCATGGTGATACTCTAGAGAGACCTATTCCAAGGAAGGTTGAGAGATTCAGTAGTCTTGGTCCTGTTGTTCAAATTTCTGCAGGTGTCAGTCATACTATGGCAGTTACTGAGGATGGTACATTATATTCTTTTGGTTATGGTTCCAATTTCTGTCTTGGCCATGGTGATCCACGAGATGTGCTGCAACCACAGGCAGTTCAAGCTTTCAAAAGGAATAATGTTCATGTAATTCGTGTATCTGCTGGAGATGAACATTCGGTTGCACTCGACTCTAATGGATATGTGCATACATGGGGGAAAGGTTATTGTGGAGCCTTGGGGCATGGTGATGAGAATGATAAGACGGTTCCAGAATTTGTGGCCATTCTTAAGGAGCATCGGGCAGTGCAGGTTTGTGCCAGGAAGAGGAAGACCTTTGTTCTCTCTGATGATGGGTTGGTATTCGCTTTTGGATGGATGGCTTTTGGAAGCTTGGGATTTGTGAATAGAGGTATTTCGGACAAAGTTGTAAGTCCACAAATGCTTGAAACACTGAAGGGTTATCACGTTTCTCAAGTAAGCACTGGGCTGTATCACACAGTTGTGGCTACAAACAAGGGTTTGGTTTTTGGTTTTGGAGACAATGAGAGGGCACAGCTTGGGCAAGATTCCTTGAGGCAATGTCTGGAACCAAGAGAGATTAAGATGAGGGATATACTGGAAGAGGAATCTGGGACAGGTATTGTAACTGTTTAAACATCGGAAATGGCAGGTGCTTATGGAAATATCTCTTGCCTCATAAGAAATTCCAATTTCCAAACACAAAACACACAATGTTCAGTGTGTTCTAAAAGGAGCTCATCATGTTGAGCTCCTCATATAGTGTAAATTAAAATGGATATTTTCATTGGATAAACTGTGGGAGAAGGTTCTGGGGTATTATCGGGGGAAAGCTTCTGACAGAGTAAGCATAATGTATCTGCAAGTTCTGACAATTCAGATCCTATTTTAGAATGTTGCAGAGCTTTGGGTAGATTCAAGTGAAAGGTATTTCCAATTGTCAATTATCCAGATAAAATTGTCCGTTTCAAGTTGCTGGGAATGCATCAGGTTGTATCCATGCATCTTGTTGAGGTGGCAATTTTCTTCAGCATTAAAATATAGATAATCTATTATTTTCAGTCCATGCAGCATGAAAATAGAGAATGTGGTCCTGATATTTTGGATTGTATATAATTTTGCTCCAAAATCGGGATGGAAAGAATGTAGTATTTGTTTCCATTCCTTGTAATATTGCAAAATGTTATATTTTTTTTCCATAAAAAATAGACCGCATGGTACGTATGTTTGCAACA

Ace file of the UniGene sp_v3.0_unigene3245 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	5.0e-18	26%
FL-Next	tr=Os07g0459400 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	63%

Source	Gene names
Sma3	At3g15430; GSVIVT00027640001; MJK13.9; OSJNBa0040K22.115; Os07g0459400; OsI_25886; OsJ_24138; PHYPADRAFT_171650; POPTRDRAFT_1113880; POPTRDRAFT_235974; POPTRDRAFT_680778; RCOM_1126130; VITISV_023540;

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G15430.1	Regulator of chromosome condensation (RCC1) family protein chr3:5209408-5211562 FORWARD LENGTH=488	59%
RefSeq	Arabidopsis thaliana	NP_566512.1	regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002316910.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q84YP7

Fln msg:

Fln protein: MAEERRLRSLEELPTHLLEEILSSGQLSAADLARLEASCYTFRASYGNGHGFVTYRGGGGLKSMPELAAFQSCLADRIFSAMPLSCQTELVNRCRGNWKLVLRFLQSVHQAFASVDTPKGNVQVTTGKYHTLLVEDGSLYTCGSSICGVLGHGPEITQCGALTRVEFPLGLSVAQVSGSHNHAALVTQNGEVFTWGDNSSFCCGHGEVGCVIFKPTRVEALKGIFCKQVATGLSFTVILTRHGQVYTCGSNSHGQLGHGDTLERPIPRKVERFSSLGPVVQISAGVSHTMAVTEDGTLYSFGYGSNFCLGHGDPRDVLQPQAVQAFKRNNVHVIRVSAGDEHSVALDSNGYVHTWGKGYCGALGHGDENDKTVPEFVAILKEHRAVQVCARKRKTFVLSDDGLVFAFGWMAFGSLGFVNRGISDKVVSPQMLETLKGYHVSQVSTGLYHTVVATNKGLVFGFGDNERAQLGQDSLRQCLEPREIKMRDILEEESGTGIVTV*

Protein Length: 503

Fln nts: TCATTGGTAAATATTCAAGCATAATATGGACACCACAAAGGAACTTGGACTGACCAGACCCGGGTGGGTGAAAATCAGCGTGTTTTTTTGTCAGGGTAAAAGGAAAGAGAGAAATAATATACAGAGCACAGTTTGCTTAGGGTTAGTTGATTGGTGCGGAGGGAATGAATACTAAGTCCCAAGGGCGCTGGTTGCTTCTTTACTTGAAGTTGGTTGCAGCAGCTCACAAATCTCTCTTGGGCAGGAATCTTCCTTCCATTCTTATAATAGTGAGTGGCGGAAAGGTAAAGGATAGGTAAAGGATATTTGGCCGGCATTAAAGTTGCAGGATCTGATACCAATACTTACAGAGAATCAGAAAACTAGTAAGGGCATGGATTTCAGCATCCTATAAATCCAACTCTGCCCAATTCATTTCGAATTCAAATCGTTTCATAATTCTGATACCTTCAAGGTACATATTGCATCATAATTATGTATTTTTAGAGGAGCTTCTTTCAGTTCGATGGTAAATAATAGTTTTGCAGACTTTCCTTCATATGGTTTTGGATGGAGGTTTATTCAGGTCCAAACCCCCAAAATATTTGAGGTTGGCGTTTGATCAAAGGGTTTTTAAATCTCTCTCCATGCTATTGAAATAAGTTGTTTGGGACTGGGAAATTGTTGCCCAATTATTTCTGGGTATTGGTGTGGCTATGACTATAGCTATGGAGCACCCAATTCAGGACATTCTCCGAATAAATAAATTGACAATGTCAATGCCGATAAGGAGTCTCTGCATTATTGGTAGTAATATCATCATTGTTTCCTGACGTTTAGTAAAGAAGATGCTTGTTTTCTTCTCTGCCACATCTAAGTGTTAGTATCAGGGCAAAAGTTCAAACCCAAATCCCCAAAATCAACACTAGTTGCTTAGTGGAAGTAAGGGGAATATTATAAGGTCAAGAAGAAAGCTCT_-_ATGGCTGAGGAGCGCAGGCTGCGTTCGTTGGAAGAGCTGCCAACCCATCTGCTTGAGGAGATATTGAGCAGTGGACAACTGAGTGCTGCAGACTTGGCGAGGTTGGAGGCATCCTGCTATACGTTCCGGGCGTCATATGGGAATGGGCATGGGTTTGTGACATATAGAGGAGGTGGAGGGTTGAAGTCCATGCCGGAGCTGGCAGCGTTTCAGTCATGTCTTGCGGATAGGATATTCTCGGCGATGCCGTTGTCTTGCCAGACCGAGCTTGTGAACCGATGCAGAGGGAATTGGAAGCTCGTTTTGAGGTTTCTGCAATCTGTGCACCAAGCCTTTGCCTCGGTGGACACTCCAAAAGGCAATGTCCAAGTTACCACTGGAAAATATCACACGCTTCTGGTTGAAGATGGGTCATTGTATACATGTGGATCAAGTATATGTGGAGTTCTGGGGCATGGGCCAGAAATCACTCAGTGTGGGGCATTGACTCGGGTTGAATTTCCCTTGGGTTTGAGCGTGGCTCAAGTATCAGGCTCTCATAATCATGCTGCTCTTGTGACTCAGAATGGAGAAGTTTTTACGTGGGGAGATAACTCTTCTTTTTGTTGTGGCCATGGAGAAGTCGGGTGTGTTATTTTCAAACCTACACGTGTTGAAGCTCTCAAGGGGATCTTTTGCAAGCAGGTTGCAACAGGTCTCAGTTTCACTGTCATTCTTACAAGGCATGGCCAAGTTTACACATGCGGCAGTAACTCACATGGTCAGTTGGGGCATGGTGATACTCTAGAGAGACCTATTCCAAGGAAGGTTGAGAGATTCAGTAGTCTTGGTCCTGTTGTTCAAATTTCTGCAGGTGTCAGTCATACTATGGCAGTTACTGAGGATGGTACATTATATTCTTTTGGTTATGGTTCCAATTTCTGTCTTGGCCATGGTGATCCACGAGATGTGCTGCAACCACAGGCAGTTCAAGCTTTCAAAAGGAATAATGTTCATGTAATTCGTGTATCTGCTGGAGATGAACATTCGGTTGCACTCGACTCTAATGGATATGTGCATACATGGGGGAAAGGTTATTGTGGAGCCTTGGGGCATGGTGATGAGAATGATAAGACGGTTCCAGAATTTGTGGCCATTCTTAAGGAGCATCGGGCAGTGCAGGTTTGTGCCAGGAAGAGGAAGACCTTTGTTCTCTCTGATGATGGGTTGGTATTCGCTTTTGGATGGATGGCTTTTGGAAGCTTGGGATTTGTGAATAGAGGTATTTCGGACAAAGTTGTAAGTCCACAAATGCTTGAAACACTGAAGGGTTATCACGTTTCTCAAGTAAGCACTGGGCTGTATCACACAGTTGTGGCTACAAACAAGGGTTTGGTTTTTGGTTTTGGAGACAATGAGAGGGCACAGCTTGGGCAAGATTCCTTGAGGCAATGTCTGGAACCAAGAGAGATTAAGATGAGGGATATACTGGAAGAGGAATCTGGGACAGGTATTGTAACTGTTTAA___ACATCGGAAATGGCAGGTGCTTATGGAAATATCTCTTGCCTCATAAGAAATTCCAATTTCCAAACACAAAACACACAATGTTCAGTGTGTTCTAAAAGGAGCTCATCATGTTGAGCTCCTCATATAGTGTAAATTAAAATGGATATTTTCATTGGATAAACTGTGGGAGAAGGTTCTGGGGTATTATCGGGGGAAAGCTTCTGACAGAGTAAGCATAATGTATCTGCAAGTTCTGACAATTCAGATCCTATTTTAGAATGTTGCAGAGCTTTGGGTAGATTCAAGTGAAAGGTATTTCCAATTGTCAATTATCCAGATAAAATTGTCCGTTTCAAGTTGCTGGGAATGCATCAGGTTGTATCCATGCATCTTGTTGAGGTGGCAATTTTCTTCAGCATTAAAATATAGATAATCTATTATTTTCAGTCCATGCAGCATGAAAATAGAGAATGTGGTCCTGATATTTTGGATTGTATATAATTTTGCTCCAAAATCGGGATGGAAAGAATGTAGTATTTGTTTCCATTCCTTGTAATATTGCAAAATGTTATATTTTTTTTCCATAAAAAATAGACCGCATGGTACGTATGTTTGCAACA

Fln Alignment:

Contig3245___PTHLLEEILSSGQLSAADLARLEASCYTFRASYGNGHGFVTYRGGGGLKSMPELAAFQSCLADRIFSAMPLSCQTELVNRCRGNWKLVLRFLQSVHQAFASVDTPKGNVQVTTGKYHTLLVEDGSLYTCGSSICGVLGHGPEITQCGALTRVEFPLGLSVAQVSGSHNHAALVTQNGEVFTWGDNSSFCCGHGEVGCVIFKPTRVEALKGIFCKQVATGLSFTVILTRHGQVYTCGSNSHGQLGHGDTLERPIPRKVERFSSLGPVVQISAGVSHTMAVTEDGTLYSFGYGSNFCLGHGDPRDVLQPQAVQAFKRNNVHVIRVSAGDEHSVALDSNGYVHTWGKGYCGALGHGDENDKTVPEFVAILKEHRAVQVCARKRKTFVLSDDGLVFAFGWMAFGSLGFVNRGISDKVVSPQMLETLKGYHVSQVSTGLYHTVVATNKGLVFGFGDNERAQLGQDSLRQCLEPREIKMRDILEE
Q84YP7______________PGHLIGEVLTSGRLAAGDLARLEATCRA-------------------LRPLAEHAASRLCAARAAFAAMGPAARGELLERCGGSWKKVLRFLQSVEQSSGTVHTSSGNMQVATGRYHTLLVHDSSVYSCGSSLCGVLGHGPDTTQCAAFSRVPFPSLSRVVNISASHNHAAFVTELGEVFTCGDNSSLCCGHGEVGRTIFRPTEIKALKGISCKQVATGLSFTVILTTDGQVYTCGSNTHGQLGHGDTIDRATPKIVELFEGLAPVVQVAAGASYTFAVTDDGTVYSFGSCTNFCLGHGDQHDELRPRAIQSFKRRNIHVVRVSAGDEHAVALDALGYVYTWGRGYCGALGHGDENDKTSPELISSLKSQVAVQVCARKRKTFVLTDEGSVFAFGWMGFGSLGFPDRGSSDKVMRPRVLDSLRDHYVSQISTGLYHTVAVTNRGIVFGFGDNERAQLGQEYIRGCLKPTEIMFQKSMEE

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
1053	90	10			0.90298
1057		90		10	0.90298
1060		10		90	0.90298
1063	11		88		0.923564
1065			88	11	0.923564
1068	11	11	77		0.968132
1070	11		88		0.923564
1077		87		12	0.992554
1187	90	10			0.90298
1273			87	12	0.992554
1274			87	12	0.992554
1297	85		14		0.993533
1429		85	14		0.993533
1625	14	85			0.993533
1743	75	25			0.996473
1749		25		75	0.996473
1750	25			75	0.996473
1752			25	75	0.996473
1753		25	75		0.996473
1754	25		75		0.996473
1756			75	25	0.996473
1758		25	75		0.996473
1760	25	75			0.996473
1761		75		25	0.996473
1762	75			25	0.996473
1763		75		25	0.996473
2234	50		50		1.0
2366		11		88	0.923564
2381		12		87	0.992554
2434	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain