SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3242

Length: 1295 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3242

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Protein kinase-like n=1 Tax=Vitis vinifera RepID=UPI0001986357	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Protein kinase-like	-	-	1.004e-06	-

Source	Gene names
Sma3	24K23.22; At1g61640; CHLREDRAFT_101909; CHLREDRAFT_123240; GSVIVT00011009001; GSVIVT00018673001; H0112G12.2; MICPUCDRAFT_19774; MICPUN_68420; MtrDRAFT_AC149642g9v2; OSJNBa0015K02.12; OSTLU_43325; Os04g0660200; Os07g0558000; OsI_17767; OsI_26459; OsJ_16491

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11390.1	Protein kinase superfamily protein chr1:3834762-3837305 REVERSE LENGTH=624	74%
RefSeq	Arabidopsis thaliana	NP_172606.3	aarF domain-containing kinase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002316668.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL04

Fln msg: your sequence is shorter than subject: 411 - 657

Fln protein: HGSLEKAGAAFIKWGQWAATRPDLFPRDLCKELAKLHTKAPAHKFSYTQETIERAFGRRIDEVFENFEEEPVASGSIAQVHKATLKFQYPGQKVKPMIVAVKVRHPGVSEVIRRDFVIINWVAKLSSCLPALRWLRLEESVQQFAVFMLSQVDLSREAAHLNRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEANHKFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNPSSKRIFRSKPHVVFLDVGMTAELSRNDRLNILEFFKAVARRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKFWGSAEGDVVHPSECMQELLEHVRRHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLNRSDWAKSLSYTIEGLMAP*

Protein Length: 412

Fln nts: TCATGGATCTCTGGAGAAGGCAGGGGCTGCCTTTATTAAGTGGGGTCAGTGGGCAGCCACACGTCCAGATCTTTTCCCCAGAGATTTGTGTAAGGAGCTCGCAAAACTGCACACAAAGGCACCGGCACATAAATTTTCATACACACAGGAAACTATTGAAAGGGCTTTTGGTCGTAGAATTGATGAAGTTTTTGAGAACTTTGAAGAGGAGCCCGTTGCTTCTGGCAGTATTGCCCAAGTGCATAAGGCTACTCTGAAATTTCAGTATCCTGGTCAGAAGGTAAAGCCTATGATTGTTGCGGTAAAAGTCAGACACCCTGGAGTTAGTGAAGTGATTCGGAGGGATTTTGTCATAATAAATTGGGTTGCAAAGCTTTCCAGTTGTTTGCCAGCATTGAGGTGGCTGAGACTTGAAGAAAGTGTACAACAATTTGCTGTCTTTATGTTGTCTCAAGTCGATCTTTCAAGAGAAGCTGCACACTTGAACCGTTTTCTTTACAATTTTCGCAGGTGGAAAGATGTGTCTTTTCCTAAGCCGTTGTACCCACTTGTACACCCGGCAGTTTTGGTGGAGACTTATGAACAAGGCGAGAGTGTGGCACGCTATGTTGATCAGCCAGAAGCAAACCATAAGTTTAATAGATCACTTGCTCACACTGGCACGCATACTCTCCTCAAGATGCTACTGGTGGATAATTTCATCCATGCAGATATGCATCCTGGAAATATTCTGGTTCGAATGGGACAGAGTAATCCTTCAAGCAAGCGGATTTTTCGATCGAAACCTCATGTAGTTTTCCTTGATGTGGGCATGACAGCAGAACTTTCGAGGAATGATCGGCTGAATATTTTGGAGTTCTTTAAAGCTGTTGCACGGAGGGATGGCCGGACAGCTGCAGAGTGTACACTGAAATTTTCAAGATACCAGAGCTGTCCAGATCCAAATGCCTTCATACAGGAAGTTGAGTCTTCATTCAAATTTTGGGGTTCAGCCGAAGGTGATGTAGTACATCCATCAGAGTGTATGCAAGAGTTGCTTGAACATGTGAGACGCCACAAAGTGAACATTGATGGGAATGTCTGCACTGTAATGGTGACAACATTGGTTCTTGAGGGCTGGCAGCGCAAGTTGGACCCTGATTTTAATGTTATGAACACCTTGCATACTGTTCTAAATAGATCTGATTGGGCCAAATCTCTTTCTTATACAATTGAAGGACTCATGGCCCCATAA___TTTTCATAAGAGCATGTTGGTCATGCTCTGTCAAAACATTTTGACTTTTCTTCACCCTTTA

Fln Alignment:

Contig3242___HGSLEKAGAAFIKWGQWAATRPDLFPRDLCKELAKLHTKAPAHKFSYTQETIERAFGRRIDEVFENFEEEPVASGSIAQVHKATLKFQYPGQKVKPMIVAVKVRHPGVSEVIRRDFVIINWVAKLSSCLPALRWLRLEESVQQFAVFMLSQVDLSREAAHLNRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEANHKFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNPSSKRIFRSKPHVVFLDVGMTAELSRNDRLNILEFFKAVARRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKFWGSAEGDVVHPSECMQELLEHVRRHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLNRSDWAKSLSYTIEGLMAP
B8LL04______________HRSLEKAGAAFIKWGQWAATRPDLFPRDLCKELAKLHTKAPAHKFSYTQHTIEKAFSRRIDEIFEDFEEEPVASGSIAQVHKATLKFRYPGQKVKPMIVAVKVRHPGVSEVIRRDFVIINWVAKLSSCLPALRWLRLEESVQQFAVFMLSQVDLSREAAHLNRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEGNYRFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNASSKRLFQSRPHVVFLDVGMTAELSKNDRLNILEFFKAVAQRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKYWGSPEGDVVHPAECMQELLEHVRHHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLIRSDWAKSLSYTIEELMAP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
794		16	83		0.994512
795	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain