SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3216

Length: 1931 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3216

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutaredoxin family protein [Arabidopsis thaliana] gb\|AAD03427.1\| F3H7.9 gene product [Arabidopsis thaliana] emb\|CAB40029.1\| putative protein [Arabidopsis thaliana] emb\|CAB78186.1\| putative protein [Arabidopsis thaliana] gb\|AEE82911.1\| Glutaredoxin family	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Electron transporter, putative	-	-	2.261e-08	-

Source	Gene names
Sma3	AT4g10630; At1g32760; At1g64500; At3g11773; At3g57070; At3g57070/F24I3.150; At4g10630; At5g01420; At5g01420/T10O8_130; At5g03870; At5g13810; At5g39865; At5g58530; At5g58530/mqj2_120; B0414F07.6; B1370C05.23; F24I3.150; F3H7.9; F8F6_80; GSVIVT00000505001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3		IPR012335	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Glutaredoxin-2	IPR015450	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10630.1	Glutaredoxin family protein chr4:6566625-6567629 REVERSE LENGTH=334	0.0	50%
RefSeq	Arabidopsis thaliana	NP_192801.1	Glutaredoxin family protein [Arabidopsis thaliana]	0.0	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX84

Fln msg: your sequence is shorter than subject: 413 - 471

Fln protein: RNIKFHTLEELDAKIGRADEKIASSPVKHRLQKNPSGNFIESSSKVLDNLKPALEKEQKSFKENPGRNRDGESEIFDASWDVVERDGEFIQPGKVGSDRKSRFFDGKDIKFHTLEELDAKIGRADEKKVGSPMKDSLQKNRSGDLIQSSLLIDRNAGGSASQKKIQGSNLYLDDKANSRDEFSMKLNGNLYDPELLSSTLKNLSEDDCNAVRNKESAEGKLEHSGDSQMTGNAKDKGSPDKALQGNRNPLDSFEEKCPPGGEKAVVLYTTTLRGIRKTYEDCNNVRSVLESFGVCIDERDVSMHLDFRNELKELMGKPVAVPRLFIKGRYIGGADEVLQLHEDGKLDGLLAGLSTDRAGKVCDGCGGMRFVPCLECSGSCKLVQDQNVVVRCPHCNENGLIQCPICSADATY*

Protein Length: 414

Fln nts: GTAGAAATATTAAATTCCACACACTTGAAGAATTGGATGCTAAGATTGGCAGGGCTGATGAGAAGATTGCTAGTAGTCCTGTGAAACATCGTTTGCAGAAAAATCCAAGTGGGAATTTCATAGAATCCAGCAGCAAAGTGTTGGACAATCTGAAGCCCGCGTTGGAGAAGGAACAGAAGAGCTTTAAGGAGAACCCGGGGAGAAATAGAGATGGGGAATCTGAGATTTTCGATGCATCATGGGATGTTGTGGAGAGAGATGGTGAATTCATTCAGCCTGGTAAAGTCGGTTCTGATAGGAAAAGCCGGTTTTTTGATGGTAAAGATATTAAATTCCATACACTGGAAGAATTGGATGCTAAGATCGGCAGGGCCGATGAGAAGAAGGTTGGTAGCCCCATGAAAGATAGTTTGCAGAAGAACCGAAGTGGAGATTTGATACAATCCAGCCTGCTCATTGATAGGAATGCTGGGGGTTCTGCTAGTCAGAAAAAAATCCAGGGATCCAATCTGTATTTGGATGACAAGGCCAATTCTAGGGATGAATTCTCAATGAAGCTTAATGGTAATCTTTATGATCCCGAGCTTCTTTCTTCCACATTGAAGAATCTCTCTGAGGATGATTGCAATGCTGTTAGAAACAAGGAGTCCGCAGAAGGGAAGCTTGAACATAGTGGGGATAGTCAAATGACAGGAAATGCAAAAGATAAGGGGTCCCCAGATAAAGCTCTTCAAGGTAATAGAAATCCTCTTGACAGCTTCGAGGAAAAATGCCCACCTGGTGGTGAGAAGGCAGTGGTACTGTACACTACAACACTACGAGGGATCAGGAAGACTTATGAGGATTGCAACAATGTGAGATCTGTGCTTGAGAGCTTTGGGGTCTGTATTGATGAGAGGGATGTGTCTATGCATCTAGATTTCAGGAATGAGCTGAAGGAGTTGATGGGGAAGCCTGTTGCAGTACCGAGATTGTTCATCAAGGGCAGGTATATTGGTGGTGCAGACGAAGTGTTGCAGCTTCATGAAGATGGTAAGCTGGATGGGCTTCTCGCAGGGCTTTCTACTGATAGGGCAGGCAAGGTTTGTGATGGCTGCGGTGGGATGAGATTTGTGCCCTGTTTAGAGTGCAGTGGAAGCTGTAAGCTTGTCCAGGATCAAAATGTTGTTGTGAGGTGTCCACACTGCAATGAGAATGGATTGATACAATGCCCCATATGCTCTGCTGATGCAACATATTGA___TAATCCTTAAAATCCTAGATTGGCAAACTCATCGGCTGATTGTGTTCGGATCATATCGGATGCTGACAGCCTTTGGATGGGTTGAGCCTTTGCGCAGCAGGCCTGATTAAGTTGCACATTATAGTTCTGCTCTAAATTTCTAATAGTGGCTTGATACTTTGTTTTTTATTTTTCTATTCTATTTACCATTGGAGTTCTGCAATTTGACAACAATTTGAGTATGGAGAAATTCTGAAGCCTAGACCTCAGGTCGCTGCAACAGGGGTTGTCTTATCAATACCTTTCAGAGGGATTAGCAGCCATTGAAAGAGTCTGGCTTAGGTAACAAGGAGGAGTTTGGGTAGCAGCTTCACTTGATTATGGGATTAATTGGTAAGCATTTGTTTCGTAAATGTCTCTAATTGTGTGCTCTGAAAGGAGATAATGGTGATTATGAAGATCTCAAATGATTTGTGGTAAAAACTCTATTGAGTATAATTGTAATTAAATGTGACAAAATCAATGCAAAAGGGCGTGGATTGCCACCTATGCTTCTGGGATTCACGACTGCACCTTATTATTCAGACATGATAAATGAAATAGATATGGAAGTTTTCTTGGTACTAGCCTTGTTTTATCATCATTCAAGGCCACTCTTCAGGGCAGTTCTATGTATGGCTTTATGTAGTCTATCAATATGAAGTATACATC

Fln Alignment:

Contig3216___PGKVGSDRKSRFFDGKDIKFHTLEELDAKI-GRADEKKV-----GSPMKDSLQKNRSGDLIQSSLL--IDRN-----------AGGSASQKKIQ-----GSNLYLDDKANSRDEFSMKLN--------GNLYDPELLSS---TLKNLSEDDCNAVRNKESAEGKLEHSGDSQMTGNAKDKGSPDKALQGNRNPLDSFEEKCPPGGEKAVVLYTTTLRGIRKTYEDCNNVRSVLESFGVCIDERDVSMHLDFRNELKELMG-KPVAVPRLFIKGRYIGGADEVLQLHEDGKLDGLLAGLSTDRAGKVCDGCGGMRFVPCLECSGSCKLVQDQNVVVRCPHCNENGLIQCPIC
A9NX84______________PAKKCLQKQAFILEKKTSFYHTVEEIDAQASGNASEKKCFGKENARPKQISTPGKVKSAFCLSSPLGEIDFNKSNSPENVGFHVGSVPSKQRMRRPGSHGSMTDLKFAASRRLDSSLRLSLDLIKEPSSPLFDPNLLASFEKALENLSEEEWNTIKKSEG-----QHRRKSPREGRFPWAAESDK---NKDNPLGSFEEKCPPGGANAVVLYTTTLRGIRKTFEDCNNVRDALESYGICISERDVSMHFEFRNELRKLMGGKLVTVPRLFIKGRYIGGADEALRIHEEGKMAELLAGIPTGMAGIICDGCGGVRFIPCMECSGSCKLVNDDNMVVRCPECNENGLIQCPIC

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
662	14		85		0.993533
1483	15	84			0.999986
1559		11		88	0.999952
1806		11		88	0.923564
1809	11		88		0.923564
1843	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain