SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3148

Length: 1403 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3148

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial glycoprotein family protein [Arabidopsis thaliana] emb\|CAB82978.1\| putative protein [Arabidopsis thaliana] gb\|AAP88362.1\| At5g02050 [Arabidopsis thaliana] dbj\|BAE99935.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED90426.1\| Mitochondri	-	-	1.0e-32	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial glycoprotein	IPR003428	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZV3

Fln msg:

Fln protein: MALFYVVRRAASSVAPVAFRALNQQRLIHSAVGAAFQNRCRREITKGTVWVPSRAATSIAAKSKYEENLLAVLDEEIQCAVESDPPTQDVKPEGNIPFEIEDLPGVQTITLRRKYGNEEIKVEVLSGDVGDDSDEEGSGNDSTSGGIQVNLTVTIAKGGGPSLEFICTGYSDEVSIEGMAVKHKQPTEAEAVDPIPYEGPPFNDLDENLQKGFHKYLEVRGITPSLSNYLCEYMINKESKEYTNWLKNVKEFVAK*

Protein Length: 257

Fln nts: GGAGACAGGGTTTTTAAAAATAAAAATGAAGATAAAAGGTATTAGTTCCAAATTCTTAAACCCTAGACTAGACAGCGATAGGGTTTTATGAAAACGATTAAGCTCTTTTGTTCCAAAGTCTTAAACCCTACCTCTAGACAGGGTTTTAGTTCGGATAGATAACCCTATCTGCGATTTCGATTTTACGTAGAGAAATCTTTGTCGGA_-_ATGGCTCTGTTCTATGTTGTTCGCAGGGCTGCCTCTTCTGTAGCACCAGTGGCCTTCAGAGCCCTAAATCAGCAGAGATTAATTCATTCAGCCGTTGGGGCTGCATTTCAAAACCGCTGCAGGAGAGAAATAACGAAAGGAACAGTATGGGTTCCAAGCCGAGCGGCTACTTCAATAGCAGCCAAGTCGAAATACGAAGAAAACCTCCTGGCAGTGCTCGACGAGGAAATTCAGTGTGCAGTTGAATCAGATCCTCCCACGCAGGATGTCAAACCCGAGGGCAACATACCCTTCGAGATAGAAGATTTGCCAGGCGTTCAGACGATCACACTCCGGAGGAAATACGGCAACGAGGAGATAAAGGTTGAAGTTCTCTCCGGGGATGTTGGTGACGATAGCGATGAAGAAGGCAGTGGCAACGATTCCACGTCAGGGGGAATCCAAGTGAATTTAACGGTCACTATTGCCAAAGGAGGAGGTCCTTCCCTTGAGTTTATTTGCACTGGGTATTCCGACGAGGTTTCAATTGAGGGCATGGCTGTCAAGCATAAGCAGCCAACAGAAGCAGAAGCAGTTGACCCAATTCCGTATGAGGGACCTCCCTTCAACGACTTGGATGAGAATTTGCAAAAGGGCTTTCATAAATACCTGGAAGTGCGAGGCATCACACCTAGTCTATCAAATTACTTGTGCGAGTACATGATAAATAAGGAGAGCAAGGAGTATACCAATTGGTTGAAGAATGTTAAGGAATTTGTTGCGAAGTAG___AATTTAATGACATTTTTGTTTTGGTAGCTAGTTATGGATTAATGATTAACCAAGGAAAGGGCCTTATAAATGTTTTAGTGAAGAGAAGAGGAAATTGGTACCATTATTCCTGGTATTGTTTAATTTATGGGTGTTGCAAGCTTCCCTGCTAATTTTTTGAGAAAATTTTGTTGTATTTCAAGTTTTTTGATATGCCGTGTTATATGCAAAGAGAGCAAGGAGTATATTAATTACAACGTGAATGGCATTTTTGTGTTGGGTAGCTAGTTATGCATCAGCCAATAAAAGGGACTGGTCAGTATCAAAGTTTAGAGAAGATGAGATTGGTGTAATTTTTCATGGTACAATTTAATTAACTGGTGTCTGCAAATCGCCCTGAAGTTCAGTTACAACGATGCGGTTTGTAATTTTAGCTGCTATATTTTCTAG

Fln Alignment:

Contig3148___MALFYXXXXXXXXXXXXXXXXLNQQRLIHSAVGAAFQNRCRREITKGTVWVPSRAATSIAAKSKYEENLLAVLDEEIQCAVESDPPTQDVKPEGNIPFEIEDLPGVQTITLRRKYGNEEIKXXXXXXXXXXXXXXXXXXXXXXXXXIQVNLTVTIAKGGGPSLEFICTGYSDEVSIEGMAVKHKQPTEAEAVDPIPYEGPPFNDLDENLQKGFHKYLEVRGITPSLSNYLCEYMINKESKEYTNWLKNVKEFVAK
A9NZV3______________MALFYVVRRAASSVAPVAFRAIKQQRFIHSAVGSAFQNRYRREITKGTSWVPSRAATSIVAKSKFEENLLAVLDEEIQCAVESDPPTQDVKPEGTIPFEIEDLPGVQTIALRRKYGSEEIKVEVLSGDDGDGNDEEGSGNDTASGGIQVNLTVSVAKGGGPFLEFICTGYADAVSIEGMAVKQKQPTESDAVDPIPYEGPPFNDLDENLQKGFHKYLEVRGITPSLSNYLCEYMINKESKEYTNWLKNVKEFVEK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
84	40			60	1.0
86			40	60	1.0
87			40	60	1.0
88	60		40		1.0
89			40	60	1.0
90	20		80		0.995493
108	12			87	0.992554
112			12	87	0.992554
113		87	12		0.992554
114		87	12		0.992554
147		71		28	1.0
326		85		14	0.993533
1282	14		85		0.993533
1285		16		83	0.994512
1294			16	83	0.994512
1295	16		83		0.994512
1296	83	16			0.994512
1299	20			80	0.995493
1305		20		80	0.995493
1318		25	75		0.996473
1343		33		66	0.997452
1344	33		66		0.997452
1347	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain