SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3127

Length: 1276 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3127

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase (Fragment) n=1 Tax=Pinus pinaster RepID=Q9M4B4_PINPS	-	-	0.0	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	prx75;

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G17820.1	Peroxidase superfamily protein chr5:5888195-5890101 REVERSE LENGTH=313	52%
RefSeq	Arabidopsis thaliana	NP_197284.1	peroxidase 57 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002319196.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NST7

Fln msg:

Fln protein: MTSKHLIIMALRLVKSLVLFAFLQPIMAKSGLQVGFYNTKCPQAESIVRGVVTSFFNADKSIPAGLLRMHFHDCFVRGCDASVLIDPVGNMVPEKAAFPNLSLRGFNIIDAAKTAVETKCPGVVSCADIIALATRDGVALAGGPQYSLPTGRRDGTISSINDVNLPGPSSLVSDAAAAFSAKGLSISEMVTLLGAHTVGNSLCSFFSDRLYSFQGSGTADPSMDPTLVVKLKKVCPSPTSSSTQDPNVFLDQNTSFIFDNSYYKQLQLKRGILQIDQELASDKTTKNTVTSFATNGNVFSKSFVAAIIKMGNIQVLTGNNGQIRKNCRAVN*

Protein Length: 333

Fln nts: GACAGCAGTGAGCTTTTCCCCTATTAGTATTCGCTCAGGGATATTTTTACTACGGCA_-_ATGACGTCGAAACATTTGATTATAATGGCACTCAGACTCGTAAAATCCCTTGTCCTCTTCGCTTTTCTGCAACCCATAATGGCAAAATCCGGGCTTCAGGTGGGATTTTACAACACCAAGTGTCCGCAAGCAGAATCCATCGTGCGGGGAGTAGTCACAAGTTTCTTTAATGCAGACAAGTCTATTCCTGCTGGACTCCTGCGCATGCATTTTCATGACTGTTTCGTAAGGGGCTGCGACGCATCGGTTCTGATTGATCCTGTAGGCAATATGGTACCAGAGAAAGCGGCATTCCCAAATCTATCGCTGAGAGGATTTAATATAATCGATGCAGCAAAAACGGCTGTCGAAACAAAATGCCCGGGTGTTGTCTCTTGTGCTGATATAATTGCGCTTGCTACCAGAGACGGTGTTGCCCTGGCAGGAGGGCCACAATACAGTCTACCAACGGGAAGAAGAGATGGAACCATATCTTCAATAAACGATGTGAATTTACCCGGTCCTAGTTCACTCGTTTCTGATGCAGCTGCAGCATTCTCTGCCAAGGGTTTGAGCATCTCAGAAATGGTCACTCTACTAGGCGCTCATACCGTTGGGAACTCGCTCTGCAGTTTCTTTAGCGATCGACTCTACAGTTTCCAAGGAAGCGGGACTGCGGATCCTTCTATGGATCCAACCTTAGTGGTGAAGTTGAAGAAAGTCTGCCCATCTCCGACGTCGTCTTCAACACAGGACCCCAACGTATTTCTGGACCAGAACACTTCGTTTATCTTCGACAACAGCTACTATAAACAACTGCAATTAAAGCGTGGAATTCTTCAAATTGATCAGGAACTCGCCTCTGACAAAACAACCAAAAACACTGTGACGAGCTTCGCCACCAATGGAAATGTGTTTAGTAAGAGCTTTGTCGCCGCCATCATAAAAATGGGAAACATCCAAGTATTAACTGGCAACAACGGACAAATTCGAAAGAATTGCAGAGCCGTGAATTGA___GCATCGTTTTCCTACTTAACGAGCACGAGAAAAAAAAATCATGTCTCCAATATACATTGGAGACACGAATAAGGGATATCCGCCATTTAGTTTCATCCCACAATGCAAAATAACTGGAAACACATAATTGTAATGCCATGAACGCTTATTCTTACCGAATATTGCATAATTGGAAACACATAATTGTAATGCCATGAACGCTTATTCTTACCGAATATTGCAT

Fln Alignment:

Contig3127___MTSKHLIIMALRLVKSLVLFAFLQPIMAKSGLQVGFYNTKCPQAESIVRGVVTSFFNADKSIPAGLLRMHFHDCFVRGCDASVLIDPVGNMVPEKAAFPNLSLRGFNIIDAAKTAVETKCPGVVSCADIIALATRDGVALAGGPQYSLPTGRRDGTISSIND-VNLPGPSSLVSDAAAAFSAKGLSISEMVTLLGAHTVGNSLCSFFSDRLYSFQGSGTADPSMDPTLVVKLKKVCPSPTSSSTQDPNVFLDQNTSFIFDNSYYKQLQLKRGILQIDQELASDKTTKNTVTSFATN-----GNVFSKSFVAAIIKMGNIQVLTGNNGQIRKNCRAVN
A9NST7______________MMMRQSMIMDFALVA--LGFLLFSVLVEAQGTKVGFYSASCPKAESIVRSTVQTYFNADHTIAAGLLRLSFHDCFVQGCDGSILIT---GPSAERNSLTNLGLRGFEVIEDVKEQLESVCPVVVSCADILALAARDVVVLSNGPTWSVPTGRRDGLVSSSSDTANLPTPADSITVQKKKFADKGLTTEDLVTLVGAHTVGQSDCQIFRYRLYNFTATGNADPTITSSYLTQLQSLCPASGDGSKR---VALDKGSQMYFDVSFFKNVRDGNAVLESDQRLWGDESTKAVVQNYAGSVRGILGFRFDFDFTKAMIKMSNIGVKTGTDGEIRKVCSAFN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
658			20	80	0.999996
675		20		70	0.999998
684	90		10		0.90298
924		20	80		0.995493
950		20		80	0.995493
966		75		25	0.996473
1063	40			60	1.0
1064	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain