SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3125

Length: 3585 nt

UniGene Fasta

>sp_v3.0_unigene3125
GAATCTACGGATGTGCGGAATCGAGGCGCAGTTTGCAGATCTGTTTCTTAGCGTGCGGTTCATCGCAAAATGAGGCAACCAGAACAGCGATCAAAAAATGGAACACCGGGATGAGAGTTCAAGAAACGGGAAGGATTTTTCCCGAAAATTTCACGGTTTCTGAGGAGCGTTCAATGTGAAGTTTGAGGCAGCGGTTCGCGGATTGTTTCTTGCCTCCTTCCGCAAGATTTTCGGCTCGTGTGTTGTAAATTGACGCGTACTGTTCGCATTCGGCAATGGTGCTTAAGCGTTAACTAGGCGTCGAAAACGATAAAAATGCACATTTCAGATGCCTCCTCTATGCTGTATGTCTCATGTTTCTCTTGAAAGGCAAGGGGGAAATACGCCTGTTGCTCCCCCGAAAGGGAAAATGCCTGTACTCATGGAAGCCAATGGTCCGTCGCAGAAATCGATCAAGAATACAATAACGCGGGATCAAGGTTCAAATAAAAGTCCGGCATATCAAGCTAGTCCTGGCAATTCCGTCCGTTTGAAGAGCTATCTTAGCGGTAGCCGGTGCAATGAAAATCCTCAAGGGGATATAAATGGTACAAGGTCCCCCTTGAACAGTATTTCTATTCGTTTAAGGACTCCAGAAGGTTCATTTAGAACTATAGGTTCGCAAGATGGTGGGATCGAAATCAGGGACGTGCAGCAATTTAATAGCGCTAATGCTTCTGGTATTTTGTATAAGTGGGTGAATTATGGCAAGGGATGGAAATCACGATGGTTTGTTCTCCAAGACGGGGTTCTTTCTTATTATAAGCTACACGGGCCAGATAAAATTGCAGTAAACAAAGAAACGGAGAAAGGTCTAAGGGTTATTGGTGAAGATTCATTAAAGCTTATGAGAAAGGCAAAAAATGCTTATGCTAGTGCGATCAGCACAACCCAGCGAAAAACAGTTGGAGCGGTTCATTTGAAGGTATCTTCTATTCGAGAGAGTAAATCAGATGACAAAAGATTCTCTATTTTCACTGGTACAAAGACTCTCCACTTGCGGACTGATGTTAGAGAAGACCGAGCAGCATGGATTGAGGCTTTGGTTGCTGCTAAAGATCAATTTCCTTGTATATCAACAAGCAGTAATTTTCTATTGCCCATTCAGGAGATATCTGTTTCAACTGAGAAGCTCAAATGTCGCTTACAGGAAGAGGGCTTGAATGAGGAAGTGATACGAGACTGTGAGGAGATTATGCTTTCAGAATTTTCTGAGTTGCAAAACCAGCTAAGGTTTCTTGAGCAAAAACGGTTCAATCTTCTTGACACTCTGAGGCAATTAGAGGCTGAAAAAGTGGATCTAGAGACTACTGTTGTTGATGAAAGTCAATTTCATTTAAAGGAGAGAGATGTAGGTGAATGCGAGCATGGAAAATATAGTGGTAGTGCAACGGAATCTGAGGACGACAATGAAAGGCAAGATGGTGGAGAGGTAGAAACTGATGAAGATGATGATACATTTTTTGACACAAAGGATTCTTTGTCAGATTCTTTACGAAGCACCAGCTCTGGATACAGGCGAACATCAGCAGGATCTGATGATGAACTTCTTGACGATGAAGATTTGTCTGATGGTACAAGTGGGCTTGATGCAGACATGGAACATGTTGGCTTTGGCTATCCTTATGTGAAAAGGAGAAAGAGCTTGCCTGAACCACTGGAAAAGGAAAAAGGAGTCAGCCTTTGGTCAATGATTAAAGATAACATTGGAAAGGATCTTACCCGAGTTTGTCTCCCTGTCTACTTCAACGAGCCACTTTCTTCCTTGCAAAAATGCTTTGAGGATTTAGAGTATTCCTATCTTATTGATCGAGCATATGAATGGGGGAAAAAGGGGAACAGCTTAATGCGGATATTAAATGTGGCAGCATTTGCAGTTTCTGGATATGCTTCATCTGAAGGTCGACATTGTAAACCTTTCAATCCTCTTTTAGGTGAAACATATGAGGCGGATTTTCCAGATAAAGGTCTCCGTTTCTTTGCTGAGAAGGTCAGCCATCATCCCATGCTGATTGCCTGCCATTGTGAAGGTAGAGGATGGAAATTTTGGGGAGACAGTAACCTAAAGAGCAAATTTTGGGGTCGCTCTATCCAACTTGACCCTGTAGGGATTCTAGCACTAGAGTTTGATGACGGCGAGGTCTTTCAATGGAGCAAGGTTACTACATCTATTTATAACCTCATTCTGGGGAAAATATACTGTGATCACTATGGGACAATGCGTATACAGGGGGATCGTGAATACTCGTGTAGGCTAAAGTTTAAGGAGCAATCCATAATTGATCGAAACCCTCATCAGGTACAAGGGTTTGTACAGGATAAGAGTGGGAATAAAGTAGCCACATTATTAGGGAAGTGGGATGAAAGCATTTATTACGTCCTTGGTGATATTGCCACAAAACCCAAGGGCTATGATCCAATGTCTGAGGCTTGCTTATTATGGAAAAAAAGTAAACGTGCGAAGAATCCCACAAGATACAACTTAACTTCTTTCGCAATAACTCTCAATGAACTAACTCCAGGACTTAAGGAAAAGCTCCCCCCAACTGATTCAAGGCTGAGGCCAGATCAACGGCATTTAGAAAATGGAGAGTATGAGTTGGCGAATGCAGAGAAGTTGAGGTTGGAGCAGAGGCAGCGACAGTCAAGGAAATTACAAGAAAGTGGGTGGCAGCCACGATGGTTTCGCAAAGAGAAGGACGAGGACACATACAAATATATTGGTGGATACTGGGAAGCAAGAGAACTGGGTAAATGGGACAATTGTCCAAACATATTTGGTCAGACATCCCTAGAAATTTCTTCTGATTAAGAGTGTCACATTTTTTAGTATATGTTCACCTTTCGCCAAGATTTCAGGTAACAATGCTCATAATCGAGCATTTTGTTATCTCACGTACCCGCGGTCGTTACTTCGAATCACTTGAGAGAGTACTTAGTAGTTCAGGGCTCAGGCCACATTTGGTATCACTGGGGTTATTACAAGTAGGCATGGCTTATTGCTTATTAATTTTCTTATGGTTCTTCATATATTCTCTTGTTCTGATATCAAGTTGCCTCTTAGCTTTGATATGAACAACAAACCGTGTGTGGAACATGGTCTTGTTGATTTTATATCTGGGCTGGGGAAATTCATTCTATTTTTTCCTTGTACATGAAGTTACACTTACAAATTTCAGTATGTCTTCCAACTTGGCTAGACATTTTTCTAGAACGGCAGACACCTACAGTGCTATACTTGATCCGGGAAGAAAATGTCACCAACTACAAATTATATTCAATAATTTGTTCGAAATTCCAACTGTAGATTGGATGATATAGCTTGGAGGTTATCTGAATATGGTCCAATTAGTTGATGTTTTTTGCATGCACTTTGCAGCACTGAATACAAATAGAAGATAATGTGGAGCTTATCTGAATATGGTCCAATGGTTCGAAGTTTTCCGCATGCAAACTTTGCAGCGCTGAATACAAATAGAAGATGGTTTTGCTGTTTTTCTTGGTTTGTTATGTTTTCTATTTACATATGACAAGGATACTAATCGA

Ace file of the UniGene sp_v3.0_unigene3125

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana] gb\|AEE82607.1\| OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana]	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Putative oxysterol-binding protein	-	-	5.445e-18	-

Source	Gene names
Sma3	AT4g08180; AT4g12460; AT4g22540; At1g13170; At1g77730; At2g31020; At2g31030; At4g08180; At4g12460; At4g22540; F3F19.19; GSVIVT00007314001; GSVIVT00007315001; GSVIVT00009629001; GSVIVT00012103001; GSVIVT00015325001; GSVIVT00019243001; GSVIVT00030711001; GS

Source	GOs	Term	Type	e value	Identity
Sma3	steroid metabolic process	GO:0008202	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Oxysterol-binding protein	IPR000648	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G08180.1	ORP1C OSBP(oxysterol binding protein)-related protein 1C chr4:5169727-5173360 FORWARD LENGTH=814	69%
RefSeq	Arabidopsis thaliana	NP_849343.2	OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002301011.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLZ0

Fln msg: your sequence is longer than subject: 841 - 785

Fln protein: MPPLCCMSHVSLERQGGNTPVAPPKGKMPVLMEANGPSQKSIKNTITRDQGSNKSPAYQASPGNSVRLKSYLSGSRCNENPQGDINGTRSPLNSISIRLRTPEGSFRTIGSQDGGIEIRDVQQFNSANASGILYKWVNYGKGWKSRWFVLQDGVLSYYKLHGPDKIAVNKETEKGLRVIGEDSLKLMRKAKNAYASAISTTQRKTVGAVHLKVSSIRESKSDDKRFSIFTGTKTLHLRTDVREDRAAWIEALVAAKDQFPCISTSSNFLLPIQEISVSTEKLKCRLQEEGLNEEVIRDCEEIMLSEFSELQNQLRFLEQKRFNLLDTLRQLEAEKVDLETTVVDESQFHLKERDVGECEHGKYSGSATESEDDNERQDGGEVETDEDDDTFFDTKDSLSDSLRSTSSGYRRTSAGSDDELLDDEDLSDGTSGLDADMEHVGFGYPYVKRRKSLPEPLEKEKGVSLWSMIKDNIGKDLTRVCLPVYFNEPLSSLQKCFEDLEYSYLIDRAYEWGKKGNSLMRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGLRFFAEKVSHHPMLIACHCEGRGWKFWGDSNLKSKFWGRSIQLDPVGILALEFDDGEVFQWSKVTTSIYNLILGKIYCDHYGTMRIQGDREYSCRLKFKEQSIIDRNPHQVQGFVQDKSGNKVATLLGKWDESIYYVLGDIATKPKGYDPMSEACLLWKKSKRAKNPTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQRQRQSRKLQESGWQPRWFRKEKDEDTYKYIGGYWEARELGKWDNCPNIFGQTSLEISSD*

Protein Length: 842

Fln nts: GAATCTACGGATGTGCGGAATCGAGGCGCAGTTTGCAGATCTGTTTCTTAGCGTGCGGTTCATCGCAAAATGAGGCAACCAGAACAGCGATCAAAAAATGGAACACCGGGATGAGAGTTCAAGAAACGGGAAGGATTTTTCCCGAAAATTTCACGGTTTCTGAGGAGCGTTCAATGTGAAGTTTGAGGCAGCGGTTCGCGGATTGTTTCTTGCCTCCTTCCGCAAGATTTTCGGCTCGTGTGTTGTAAATTGACGCGTACTGTTCGCATTCGGCAATGGTGCTTAAGCGTTAACTAGGCGTCGAAAACGATAAAAATGCACATTTCAG_-_ATGCCTCCTCTATGCTGTATGTCTCATGTTTCTCTTGAAAGGCAAGGGGGAAATACGCCTGTTGCTCCCCCGAAAGGGAAAATGCCTGTACTCATGGAAGCCAATGGTCCGTCGCAGAAATCGATCAAGAATACAATAACGCGGGATCAAGGTTCAAATAAAAGTCCGGCATATCAAGCTAGTCCTGGCAATTCCGTCCGTTTGAAGAGCTATCTTAGCGGTAGCCGGTGCAATGAAAATCCTCAAGGGGATATAAATGGTACAAGGTCCCCCTTGAACAGTATTTCTATTCGTTTAAGGACTCCAGAAGGTTCATTTAGAACTATAGGTTCGCAAGATGGTGGGATCGAAATCAGGGACGTGCAGCAATTTAATAGCGCTAATGCTTCTGGTATTTTGTATAAGTGGGTGAATTATGGCAAGGGATGGAAATCACGATGGTTTGTTCTCCAAGACGGGGTTCTTTCTTATTATAAGCTACACGGGCCAGATAAAATTGCAGTAAACAAAGAAACGGAGAAAGGTCTAAGGGTTATTGGTGAAGATTCATTAAAGCTTATGAGAAAGGCAAAAAATGCTTATGCTAGTGCGATCAGCACAACCCAGCGAAAAACAGTTGGAGCGGTTCATTTGAAGGTATCTTCTATTCGAGAGAGTAAATCAGATGACAAAAGATTCTCTATTTTCACTGGTACAAAGACTCTCCACTTGCGGACTGATGTTAGAGAAGACCGAGCAGCATGGATTGAGGCTTTGGTTGCTGCTAAAGATCAATTTCCTTGTATATCAACAAGCAGTAATTTTCTATTGCCCATTCAGGAGATATCTGTTTCAACTGAGAAGCTCAAATGTCGCTTACAGGAAGAGGGCTTGAATGAGGAAGTGATACGAGACTGTGAGGAGATTATGCTTTCAGAATTTTCTGAGTTGCAAAACCAGCTAAGGTTTCTTGAGCAAAAACGGTTCAATCTTCTTGACACTCTGAGGCAATTAGAGGCTGAAAAAGTGGATCTAGAGACTACTGTTGTTGATGAAAGTCAATTTCATTTAAAGGAGAGAGATGTAGGTGAATGCGAGCATGGAAAATATAGTGGTAGTGCAACGGAATCTGAGGACGACAATGAAAGGCAAGATGGTGGAGAGGTAGAAACTGATGAAGATGATGATACATTTTTTGACACAAAGGATTCTTTGTCAGATTCTTTACGAAGCACCAGCTCTGGATACAGGCGAACATCAGCAGGATCTGATGATGAACTTCTTGACGATGAAGATTTGTCTGATGGTACAAGTGGGCTTGATGCAGACATGGAACATGTTGGCTTTGGCTATCCTTATGTGAAAAGGAGAAAGAGCTTGCCTGAACCACTGGAAAAGGAAAAAGGAGTCAGCCTTTGGTCAATGATTAAAGATAACATTGGAAAGGATCTTACCCGAGTTTGTCTCCCTGTCTACTTCAACGAGCCACTTTCTTCCTTGCAAAAATGCTTTGAGGATTTAGAGTATTCCTATCTTATTGATCGAGCATATGAATGGGGGAAAAAGGGGAACAGCTTAATGCGGATATTAAATGTGGCAGCATTTGCAGTTTCTGGATATGCTTCATCTGAAGGTCGACATTGTAAACCTTTCAATCCTCTTTTAGGTGAAACATATGAGGCGGATTTTCCAGATAAAGGTCTCCGTTTCTTTGCTGAGAAGGTCAGCCATCATCCCATGCTGATTGCCTGCCATTGTGAAGGTAGAGGATGGAAATTTTGGGGAGACAGTAACCTAAAGAGCAAATTTTGGGGTCGCTCTATCCAACTTGACCCTGTAGGGATTCTAGCACTAGAGTTTGATGACGGCGAGGTCTTTCAATGGAGCAAGGTTACTACATCTATTTATAACCTCATTCTGGGGAAAATATACTGTGATCACTATGGGACAATGCGTATACAGGGGGATCGTGAATACTCGTGTAGGCTAAAGTTTAAGGAGCAATCCATAATTGATCGAAACCCTCATCAGGTACAAGGGTTTGTACAGGATAAGAGTGGGAATAAAGTAGCCACATTATTAGGGAAGTGGGATGAAAGCATTTATTACGTCCTTGGTGATATTGCCACAAAACCCAAGGGCTATGATCCAATGTCTGAGGCTTGCTTATTATGGAAAAAAAGTAAACGTGCGAAGAATCCCACAAGATACAACTTAACTTCTTTCGCAATAACTCTCAATGAACTAACTCCAGGACTTAAGGAAAAGCTCCCCCCAACTGATTCAAGGCTGAGGCCAGATCAACGGCATTTAGAAAATGGAGAGTATGAGTTGGCGAATGCAGAGAAGTTGAGGTTGGAGCAGAGGCAGCGACAGTCAAGGAAATTACAAGAAAGTGGGTGGCAGCCACGATGGTTTCGCAAAGAGAAGGACGAGGACACATACAAATATATTGGTGGATACTGGGAAGCAAGAGAACTGGGTAAATGGGACAATTGTCCAAACATATTTGGTCAGACATCCCTAGAAATTTCTTCTGATTAA___GAGTGTCACATTTTTTAGTATATGTTCACCTTTCGCCAAGATTTCAGGTAACAATGCTCATAATCGAGCATTTTGTTATCTCACGTACCCGCGGTCGTTACTTCGAATCACTTGAGAGAGTACTTAGTAGTTCAGGGCTCAGGCCACATTTGGTATCACTGGGGTTATTACAAGTAGGCATGGCTTATTGCTTATTAATTTTCTTATGGTTCTTCATATATTCTCTTGTTCTGATATCAAGTTGCCTCTTAGCTTTGATATGAACAACAAACCGTGTGTGGAACATGGTCTTGTTGATTTTATATCTGGGCTGGGGAAATTCATTCTATTTTTTCCTTGTACATGAAGTTACACTTACAAATTTCAGTATGTCTTCCAACTTGGCTAGACATTTTTCTAGAACGGCAGACACCTACAGTGCTATACTTGATCCGGGAAGAAAATGTCACCAACTACAAATTATATTCAATAATTTGTTCGAAATTCCAACTGTAGATTGGATGATATAGCTTGGAGGTTATCTGAATATGGTCCAATTAGTTGATGTTTTTTGCATGCACTTTGCAGCACTGAATACAAATAGAAGATAATGTGGAGCTTATCTGAATATGGTCCAATGGTTCGAAGTTTTCCGCATGCAAACTTTGCAGCGCTGAATACAAATAGAAGATGGTTTTGCTGTTTTTCTTGGTTTGTTATGTTTTCTATTTACATATGACAAGGATACTAATCGA

Fln Alignment:

Contig3125___SGILYKWVNYGKGWKSRWFVLQDGVLSYYKLHGPDKIAVNKETEKGLRVIGEDSLKLMRKAKNAYASAISTTQRKTVGAVHLKVSSIRESKSDDKRFSIFTGTKTLHLRTDVREDRAAWIEALVAAKDQFPCISTSSNFLLPIQEISVSTEKLKCRLQEEGLNEEVIRDCEEIMLSEFSELQNQLRFLEQKRFNLLDTLRQLEAEKVDLETTVVDESQFHLKERDVGECEHGKYS-GSATESEDDNERQDGGEVXXXXXXXXXXXXXXXXXXXXXXXXX-GYRRTSAXXXXXXXXXXXXXXXXXXXXADMEHVGFGYPYVKRRKSLPEPLEKEKGVSLWSMIKDNIGKDLTRVCLPVYFNEPLSSLQKCFEDLEYSYLIDRAYEWGKKGNSLMRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGLRFFAEKVSHHPMLIACHCEGRGWKFWGDSNLKSKFWGRSIQLDPVGILALEFDDGEVFQWSKVTTSIYNLILGKIYCDHYGTMRIQGDREYSCRLKFKEQSIIDRNPHQVQGFVQDKSGNKVATLLGKWDESIYYVLGDIATKPKGYDPMSEACLLWKKSKRAKNPTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQRQRQSRKLQESGWQPRWFRKEKDEDTYKYIGGYWEARELGKWDNCPNIFGQTSLEISSD
B8LLZ0______________AGILQKWVNYGKGWRCRWFVLHDGVLSYYKIHGPHKISVSRETEKAVRVIGEDSLKLIRKPKSQGIEP--SHRRRPLGEVHLKVSSIRESRSDDKRFSVFTGTKRLHLRAESREDRAAWIEALQAAKDLFPHISIN-DLMSPIENITVSTEKLRCRLLEAGLSEAAIQESEQIMMAEFSVLQNQLNLLQQKQFRLLETLRQLETEKFDLETKVVDESQHRSKHVSSSKSRNGKYSEGSVTDSDDDNERQDGPEEESDEDESTYFDTREFLSSNSLRRTDSGHRRSSVDSDEGLALSNSRFGVD----VDMQMVGFDHPYVQRRKNLPEPKEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAYEWGKRGNNLMRILNVAAFAVSGYASTDGRNCKPFNPLLGETYEADYPDKGIRFISEKVSHHPMIVACHCEGRGWKFWGDSNLKSKFWGRSIQLDPIGVLTLEFDDGEVFHWSKVTTSIYNLILGKLYCDHYGTMRIQGNHEYSCKLKFKEQSIIDRNPHQVQGLVQNRTGNTVSTLFGKWDESLYYINDDAASKSKGDDPSSEAVLLWERNKPPKNPTRYNLTRFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYDLANVEKLRLEQRQRQARKLQETGWQPQWFHKEKGNDTYQYIGGYWETREQSKWDSCPDIFGQINSDIAFD

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
850	80			20	0.995493
989	11			88	0.923564
1050		42		57	1.0
1116	33	66			0.997452
1590	16			83	0.994512
1765	14	85			0.993533
1766		14	85		0.993533
1768			85	14	0.993533
1992			75	25	0.996473
2555		83		16	0.994512
2803		75		25	0.996473
3400			91	8	0.999807
3401			9	85	0.999726

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain