SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3094

Length: 2964 nt

UniGene Fasta

>sp_v3.0_unigene3094
GTATGACAGTTGACCGATGGCTTCCTTCTCATTCTCCTTCTCTTGTGCATATTTAAGACCCTTAATCCATTGTACTATCAGGCTGCAGTCGAAGAGGATTATACACGGCAAGCTGTTTGAGGCAGAGCTCCGCGGATCACAAAACCCCAGATATGTATGCAGAGAGAATTGAGGTGCACAAGGAGAAGATGAGTGCACCTTATGGTTCATGGAAGTCTCCAATTACAGCAGATATAGTCTCTGGAGCCGATAAACGCTTGGGGGGCTTCGCCCTCGACGGGGAAGGGCGTGTCATATGGTTAGAAGGTCGTCCAACTGAAGCCGGACGGTCAGTTTTAGTGAGGGAGGCTGCAGACGCAGGAGGTGCAGCTGAAGATATCACCCCTGCTGGATTTAATGTTAGGACCTTGGTACATGAATATGGTGGAGGTGCATTTACTGTCTCAGGAGATGTGGTTGTGTTCTCCAACTACAAGGATCAAAGACTCTATAAGCAGTCTATCAAAGGAGACCATGCACCGATTGCACTCACTCCAGATTATGGAGCACCTGTGGTGCGTTATGCTGATGGAGTGATGGATCTTCACTTAGGCTGTTATATTACTGTAAGAGAAGACCATCGGGAAAGTGATACAAATCCAACTACAACAATTGTTTCTGTGGAGCTCAATGGGGCTGGCATATCAGAACCACATGTATTAGTCAGTGGCAGCGATTTCTATGCTTTTCCACGCTTGATACCAGATGGGGGAAAGATGGCATGGATTGAATGGAATCACCCACATATGCCTTGGGACAAATCAGAACTCTGGGTTGGCTACATGTCTGCAGAAGGTAGGGTTGAGAAACGGATATGCATTGCAGGCAACGATCCAACTATGATAGAATCCCCTACTGAACCAAAGTGGTCATCTCAAGGAGAACTTTTCTTTGTTACAGATAGGAAGAGTGGATTCTGGAATTTGTACAAATGGGTTGAGTCAACTAGTGAGGTGCAAGCATTGTACCCATTGGATGCAGAGTTTACAAGGCCTTCGTGGGTATTTGGTAATAGTTCTTATGCTTTCATTGAGCACAAGGGACAGAATAACAACATTGCATGCACCTACAGGCAAAAAGGGGTGTCCTATCTGGGAATTCTTGATCATGTTCTCGGTTCCTTCTCCTTAGTTGATCTTCCTTTTACAGATATTTACAACATTACCTCCATTGGAAATCATTTGTACCTAGAGGGAGCATCCCCTTGGCATCCTTTATCGATAGTGAAGGTTTCCTATGAAGAGAATTCGGTTGCAGTGAGGAGCATCTCTATAATTTGGTCTTCATCTTCTTTGAAAATTCCTAAGTATAGTGCATTTATAAGCTCACCAGAAATAATTGAATTTTCTACTAAAGTTCCTGGTCAGACGGCATTTGCTTATCTCTATCTGCCTTCCAATTCCAATTACGAAGCTCCTGCAGGAGAAAAGCCACCATTACTTGTAAAAAGTCATGGGGGCCCCACTAGTGAATCGCATTCAGCATTGGATTTGAGCATCCAATATTGGACAAGCAGAGGGTGGGCTTTTGCTGATGTCAACTATGGAGGAAGCACTGGGTATGGCAGGGAGTATCGTGAAAGGCTAAATGGCTCATGGGGTATCGTAGATGTTAATGATTGTTGCAGCTGTGCAGAGTTTCTGGTGACAACAGGGAAGGTAGATGGTGAGAGGCTGTGTGTTACTGGGAGATCGGCTGGAGGCTACACAACGCTGGCTGCACTTGTATTTAGGGAAACATTTAAAGCTGGGGCTTCATTGTTTGGAGTTGCCGACTTGTCACTATTGAAAGCTGATACACACAAGTTTGAATCATATTACACTGACAGTCTTGTTGGGAAGGATGAATCATTACTGTATGCACGATCACCCATCAATTATGTTGATAGGCTTTCATGTCCAATAATCTTATTTCAAGGATTAGAAGACAAGGTTGTCCCTCCTGAACAAGCACGTAAGATCTATGCAGCAGTGAAGGAAAAAGGGTTACCTGTTGCACTCATTGAGTATGAAGGCGAACAACATGGCTTCCGGAAGGCAGAGAACATCAAGTACACTATTGAACAGCAAATGGTCTTTTTTGCACGTTTGATTGGAAATTTCAAGGTGGCCGATGATATTATTCCTGTACACATAGAAAATTTCGATTAGAAGTTTAGACACTGCTACCAATGTGAAATTGTCTCTATTGCTATGTACGCATACAAAACTCGATTAAAAGTTTAGATAGTGCAACAGGTGCTGTTGCCTCAAACCCCTACAAACATGACTTATGTTATCCTATGCAATGAAACATCTCTCATGTATTTTTCCACTTATTAATGGGAATTACCGTTGGTCCCATTAGAGGTGAATTGGGCCATTGAAGCAGAATGTTTTACAAATAAAATGACCTACATAAACAATGTTCGAATGCATCTGTTTGCACATAAATCTGAGTTTTTTGTATATACAGATCCGCTTCTACTTGTGTTTTGCTATCATGTAAATATCATACTAGTCATGAGAAAAACATGATACATGATACAGCATGTGCAGATGCATGCATTTGGGCTGCATGTGCATATGTCAGACTTCGAAAATTAAGTTCATTGTGAATAATATATTGACCCAAGGTTAGTGGATCCCGCCTTGTATGGCCGGGTTTATTCTGAGTGCAGGGACCTATGATGGAATCTTCTGGGACATCGATCTGAAATGATTACCAAAATTAGTAAATTCATGTTCTGTAACTTTAATTGTCATCTGTAACATGATGATACCCATTCCCTTGATAGAGTAACAAAACCTTATCAATGTTTTGTAATCTCAAGTGGAACGAGAGTATGTAATAAATTTTAATTAACAAGTTATTTTGAGAGATAAAAGTCCATGATGATTGTATGCTAAGTATTGAGAGTGTATCGATGAATAATGAATGCGCCCT

Ace file of the UniGene sp_v3.0_unigene3094

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acylamino-acid-releasing enzyme, putative (EC:3.4.19.1)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G36210.1	alpha/beta-Hydrolases superfamily protein chr5:14248202-14253272 REVERSE LENGTH=730	64%
RefSeq	Arabidopsis thaliana	NP_198470.3	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002302446.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWZ2

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: SIVLSGCSRRGLYTASCLRQSSADHKTPDMYAERIEVHKEKMSAPYGSWKSPITADIVSGADKRLGGFALDGEGRVIWLEGRPTEAGRSVLVREAADAGGAAEDITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGDHAPIALTPDYGAPVVRYADGVMDLHLGCYITVREDHRESDTNPTTTIVSVELNGAGISEPHVLVSGSDFYAFPRLIPDGGKMAWIEWNHPHMPWDKSELWVGYMSAEGRVEKRICIAGNDPTMIESPTEPKWSSQGELFFVTDRKSGFWNLYKWVESTSEVQALYPLDAEFTRPSWVFGNSSYAFIEHKGQNNNIACTYRQKGVSYLGILDHVLGSFSLVDLPFTDIYNITSIGNHLYLEGASPWHPLSIVKVSYEENSVAVRSISIIWSSSSLKIPKYSAFISSPEIIEFSTKVPGQTAFAYLYLPSNSNYEAPAGEKPPLLVKSHGGPTSESHSALDLSIQYWTSRGWAFADVNYGGSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGKVDGERLCVTGRSAGGYTTLAALVFRETFKAGASLFGVADLSLLKADTHKFESYYTDSLVGKDESLLYARSPINYVDRLSCPIILFQGLEDKVVPPEQARKIYAAVKEKGLPVALIEYEGEQHGFRKAENIKYTIEQQMVFFARLIGNFKVADDIIPVHIENFD*

Protein Length: 709

Fln nts: GTATGACAGTTGACCGATGGCTTCCTTCTCATTCTCCTTCTCTTGTGCATATTTAAGACCCTTAATCCATTGTACTATCAGGCTGCAGTCGAAGAGGATTATACACGGCAAGCTGTTTGAGGCAGAGCTCCGCGGATCACAAAACCCCAGATATGTATGCAGAGAGAATTGAGGTGCACAAGGAGAAGATGAGTGCACCTTATGGTTCATGGAAGTCTCCAATTACAGCAGATATAGTCTCTGGAGCCGATAAACGCTTGGGGGGCTTCGCCCTCGACGGGGAAGGGCGTGTCATATGGTTAGAAGGTCGTCCAACTGAAGCCGGACGGTCAGTTTTAGTGAGGGAGGCTGCAGACGCAGGAGGTGCAGCTGAAGATATCACCCCTGCTGGATTTAATGTTAGGACCTTGGTACATGAATATGGTGGAGGTGCATTTACTGTCTCAGGAGATGTGGTTGTGTTCTCCAACTACAAGGATCAAAGACTCTATAAGCAGTCTATCAAAGGAGACCATGCACCGATTGCACTCACTCCAGATTATGGAGCACCTGTGGTGCGTTATGCTGATGGAGTGATGGATCTTCACTTAGGCTGTTATATTACTGTAAGAGAAGACCATCGGGAAAGTGATACAAATCCAACTACAACAATTGTTTCTGTGGAGCTCAATGGGGCTGGCATATCAGAACCACATGTATTAGTCAGTGGCAGCGATTTCTATGCTTTTCCACGCTTGATACCAGATGGGGGAAAGATGGCATGGATTGAATGGAATCACCCACATATGCCTTGGGACAAATCAGAACTCTGGGTTGGCTACATGTCTGCAGAAGGTAGGGTTGAGAAACGGATATGCATTGCAGGCAACGATCCAACTATGATAGAATCCCCTACTGAACCAAAGTGGTCATCTCAAGGAGAACTTTTCTTTGTTACAGATAGGAAGAGTGGATTCTGGAATTTGTACAAATGGGTTGAGTCAACTAGTGAGGTGCAAGCATTGTACCCATTGGATGCAGAGTTTACAAGGCCTTCGTGGGTATTTGGTAATAGTTCTTATGCTTTCATTGAGCACAAGGGACAGAATAACAACATTGCATGCACCTACAGGCAAAAAGGGGTGTCCTATCTGGGAATTCTTGATCATGTTCTCGGTTCCTTCTCCTTAGTTGATCTTCCTTTTACAGATATTTACAACATTACCTCCATTGGAAATCATTTGTACCTAGAGGGAGCATCCCCTTGGCATCCTTTATCGATAGTGAAGGTTTCCTATGAAGAGAATTCGGTTGCAGTGAGGAGCATCTCTATAATTTGGTCTTCATCTTCTTTGAAAATTCCTAAGTATAGTGCATTTATAAGCTCACCAGAAATAATTGAATTTTCTACTAAAGTTCCTGGTCAGACGGCATTTGCTTATCTCTATCTGCCTTCCAATTCCAATTACGAAGCTCCTGCAGGAGAAAAGCCACCATTACTTGTAAAAAGTCATGGGGGCCCCACTAGTGAATCGCATTCAGCATTGGATTTGAGCATCCAATATTGGACAAGCAGAGGGTGGGCTTTTGCTGATGTCAACTATGGAGGAAGCACTGGGTATGGCAGGGAGTATCGTGAAAGGCTAAATGGCTCATGGGGTATCGTAGATGTTAATGATTGTTGCAGCTGTGCAGAGTTTCTGGTGACAACAGGGAAGGTAGATGGTGAGAGGCTGTGTGTTACTGGGAGATCGGCTGGAGGCTACACAACGCTGGCTGCACTTGTATTTAGGGAAACATTTAAAGCTGGGGCTTCATTGTTTGGAGTTGCCGACTTGTCACTATTGAAAGCTGATACACACAAGTTTGAATCATATTACACTGACAGTCTTGTTGGGAAGGATGAATCATTACTGTATGCACGATCACCCATCAATTATGTTGATAGGCTTTCATGTCCAATAATCTTATTTCAAGGATTAGAAGACAAGGTTGTCCCTCCTGAACAAGCACGTAAGATCTATGCAGCAGTGAAGGAAAAAGGGTTACCTGTTGCACTCATTGAGTATGAAGGCGAACAACATGGCTTCCGGAAGGCAGAGAACATCAAGTACACTATTGAACAGCAAATGGTCTTTTTTGCACGTTTGATTGGAAATTTCAAGGTGGCCGATGATATTATTCCTGTACACATAGAAAATTTCGATTAG___AAGTTTAGACACTGCTACCAATGTGAAATTGTCTCTATTGCTATGTACGCATACAAAACTCGATTAAAAGTTTAGATAGTGCAACAGGTGCTGTTGCCTCAAACCCCTACAAACATGACTTATGTTATCCTATGCAATGAAACATCTCTCATGTATTTTTCCACTTATTAATGGGAATTACCGTTGGTCCCATTAGAGGTGAATTGGGCCATTGAAGCAGAATGTTTTACAAATAAAATGACCTACATAAACAATGTTCGAATGCATCTGTTTGCACATAAATCTGAGTTTTTTGTATATACAGATCCGCTTCTACTTGTGTTTTGCTATCATGTAAATATCATACTAGTCATGAGAAAAACATGATACATGATACAGCATGTGCAGATGCATGCATTTGGGCTGCATGTGCATATGTCAGACTTCGAAAATTAAGTTCATTGTGAATAATATATTGACCCAAGGTTAGTGGATCCCGCCTTGTATGGCCGGGTTTATTCTGAGTGCAGGGACCTATGATGGAATCTTCTGGGACATCGATCTGAAATGATTACCAAAATTAGTAAATTCATGTTCTGTAACTTTAATTGTCATCTGTAACATGATGATACCCATTCCCTTGATAGAGTAACAAAACCTTATCAATGTTTTGTAATCTCAAGTGGAACGAGAGTATGTAATAAATTTTAATTAACAAGTTATTTTGAGAGATAAAAGTCCATGATGATTGTATGCTAAGTATTGAGAGTGTATCGATGAATAATGAATGCGCCCT

Fln Alignment:

Contig3094___SRRGLYTASCLRQSSADHKTPDMYAERIEVHKEKMSAPYGSWKSPITADIVSGADKRLGGFALDGEGRVIWLEGRPTEAGRSVLVRXXXXXXXXXXXITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGDHAPIALTPDYGAPVVRYADGVMDLHLGCYITVREDHRESDTNPTTTIVSVELNGAGISEPHVLVSGSDFYAFPRLIPDGGKMAWIEWNHPHMPWDKSELWVGYMSAEGRVEKRICIAGNDPTMIESPTEPKWSSQGELFFVTDRKSGFWNLYKWVESTSEVQALYPLDAEFTRPSWVFGNSSYAFIEHKGQNNNIACTYRQKGVSYLGILDHVLGSFSLVDLPFTDIYNITSIGNHLYLEGASPWHPLSIVKVSYEENSVAVRXXXXXXXXXXLKIPKYSAFISSPEIIEFSTKVPGQTAFAYLYLPSNSNYEAPAGEKPPLLVKSHGGPTSESHSALDLSIQYWTSRGWAFADVNYGGSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGKVDGERLCVTGRSAGGYTTLAALVFRETFKAGASLFGVADLSLLKADTHKFESYYTDSLVGKDESLLYARSPINYVDRLSCPIILFQGLEDKVVPPEQARKIYAAVKEKGLPVALIEYEGEQHGFRKAENIKYTIEQQMVFFARLIGNFKVADDIIPVHIENFD
A9NWZ2______________SRRGIYTVNCLRQSSADHKTTDMYAERIEVHKEKMSAPYGSWKSPITADIVSGADKRLGGFALDGEGRVIWLEGRPTEAGRSVLVREAADEEGTAEDITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGGHAPIALTPDYGAPVVRYADGVMDLHLGCYVTVREDHRESDTNPTTTIVSVELNGAGTTEPHVLVSGSDFYAFPRLTPDGGKMAWIEWNHPNMPWDKSELWVGYMSAEGKVEKRICIAGNDPNMIESPTEPKWSSQGELFFVTDRKSGFWNLYKWVESTNEVKALYPLDAEFTRPSWVFGNSSYAFIEQKGQNKNIACTYRQKGMSYLGILDHVLGSFSLVDLPFTDIYNITSIGSHLYLEGASPLHPLSIVKVSYEENLIAVRGISIIWSSSSLNISEYSAFISSPEIVEFSTKVPGQTAFAYLYLPSNYNYEAPEGEKPPLLVKSHGGPTSESHSALDLSIQYWTSRGWAFADVNYGGSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGRVDGERLCITGRSAGGYTTLAALVFRETFKAGASLFGVADVSLLKADTHKFESYYTDSLVGKDESLLYERSPINFVDRLSCPMILFQGLEDKVVPPEQARKIYAAVKEKGLPVALVEYEGEQHGFRKAENIKYTLEQQMVFFARLIGNFKVADDIIPVHIENFD

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
79		33	66		0.997452
80	33		66		1.0
81			66	33	0.997452
82			66	33	0.997452
83		66	33		0.997452
84			33	66	0.997452
109		66	33		0.997452
110	66		33		0.997452
285	33		66		0.997452
323		66		33	0.997452
394	33			66	1.0
497	10		90		0.90298
498		10		90	0.90298
499	10	90			0.90298
501	90			10	0.90298
553		11		88	0.923564
587		88		11	0.923564
662			87	12	0.992554
939			83	16	0.994512
940	83			16	0.994512
1494	10		90		0.90298
2108	88		11		0.999952
2585	88		12		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain