SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3082

Length: 2747 nt

UniGene Fasta

>sp_v3.0_unigene3082
CCCCAAGAAATCCGCCTCTAGTAAGTCAACATTAGGACGAATCACCTCTGTCTGTTGTTGAAGCGGGCCCGTGGCATCCATAGTTCCCGATCCATCCCCTCCACATCCATAGAATCCTCTCATCGAGTCATCTAGTTGGAATTGAAAATTGAAATTGAGTTAATAGTGCCTTGCATGTGCTTGTGGGGTTGGGGAACAGAGGTGGGTCATGGTCTTTTTGATCCGGGAAGCATCCCAAGCCAAAATAATATATTTAAGGGAAACAGTGATTAAATTTTTAGCAATAGCCTGTTAGCGTTCCTTTATTTGCCAACGAAAAAGGGCAAGGAAGACTTATCTATCGAGTTGAAAACCACATTCCAACTGCTACCAACACTAGCAGCCTTTTAGTCTATGACTACATTTTTGCCTACTACTACCATTCAACTTCCCTTAGTACGGTCATGGTCGAGTCATAGCACATCACAGCACAGAAATCTTCTTCTGAGAACTTTCTGATTCACACCTATCTCATTCCCTCAACTTGGTTACATACAATACAATTCAATCAAATCAAAATGCAAGGATTCTTGCATTCCCATCGTGAAATAGGCCATCACTCATTAATAGTGGATTTTGATCGGGTTAAAACATGCAAAGAGTCATTGTATAATCTACCCTGCACAACAAGAAGAACAGGGTAGAAGAGGATTGTTGTCGTTAAGAGTGGTAACCAGTTAGCGCTAGCAGGGCTCTCTGTTGGCTCTGTGCACATTTGTTGTACTTTGCTTTTCGTCATGGAAAACTCAACTTTGGGCTTTATTTGTCACATACTATTCTTTATAGCTCTTGGCTTACGGTATTCGAATGGGCAATCCTACAGTTTGCAGATGTATCATAAATTTTCTCCTGAAGTAAAAGAGTGGATGACATGGAGACATGGATTAGATACAGATGGGTGGCCTACGGAGGGAAGGAACGAGTATTACAAAGCATTGTATCATCATGATTCTGCTCGCCATGATCGTAAATTGGGCGACTACCCGTCGCTTACATTTCTAGCAGGCAACATGACAAACTCATTTTCACAGTTGGGATATTTGTTCTACACCATGGTTCAAGTGGGCACTCCCAACGTAACATTACTTGTAGCACTTGACACGGGCAGTGATGTGTTCTGGGTGCCTTGTGATTGCCAGGAGTGTGCTCCTACTTCTGCACCTTACTATGGATTAGATATCAATATCAATTTACAGAGTTACAGTCCATCAGCCTCACAGACAAGCAAGCCAGTTACTTGTGATAATACTCTGTGTGATTTACAAAAGAAATGCTCCAAATCTAGTGATCAATGCCCATACAACGTCGCATATGTCTCTGCAAATACTTCCACTTCAGGAACTTTAGTGGAGGATATTCTTTATCTGATTCCTGGAAATGGGTCCCGGAATGGAACAGTAGTGAAGGCACCTATCACCTTCGGGTGTGGAAAGGTACAAACGGGCTCATTTCTACAAGGTGCAGCACCATATGGTCTACTTGGGCTTGGCGTTGAACCTATCTCTGTCCCTCATATTTTATATAAATCAGGCCTTGTATCAAATTCTTTCTCTATGTGCTTCCCTCTGAATTCATCTGTCGGAAGGTTTACCTTTGGAGATAAAGTGACTTCAGACCAAAAGGAAACCCCTTTTATTATTGATCAAACACACCCAACCTATTATTTAGGTGTGAAGGAATTTTACGTGGGAACCGCTCTCGTCAAAACAGAATTTCAAGCCCTTTTTGACACTGGCACCTCATTTACATACTTGGTTGATTCAGTTTACAAAAGCCTTACATCAAATTATCATCTGCAGAGGAAAGCCTCTCCATTGGCAATTGATGATTCAAACATTCCTTTCGAGTTTTGTTATGAAATCAGCAACAGTCAAAGCATTAATCAAGGGCCTAATATATCTTTCAACTTCAATGGAGGAAACAACTTTTCTGCTATTCAACCATTAGTCCTTATTGGTGATGAGAATGGGAAGTTGGTAGGTTACTGTTTGGCAGTGCTTCAGAGCTCGACAGTCACAATTATTGGTCAGAATTTCATGGCAGGTTATCAACTTGTCTTTGACCGGGAGCAGCTCAAACTGGGGTGGAAGGAAGCTAACTGTAATGATTTGGAGTATAGCAGCAGTGCAGCGTCAGCACCATCAAGTTTGACACCACTTCAGTCACCCCTTGCCCCTTCCTCGGTCGATGACAGCGAACACAAATCTAATACAACTACAAATAGTTCAACAGGGTCACCTCCGAAGCAGTCCATATCTCCTGATGCTCTACCAGCTAATCCTAATGCCATCGGGAATGATGCAACCCATTTAAGCTTATTTTTTCTGTGCAATGTCATCTCATTTACAGTCACCATCACCATTCTTACAAATCTCTTTTAAATCATTTATGCACAATGAAGATGTCTATGGTGACATGAGTTTTTCCTTCCCATTATTTTTATTGTTCCAATTTTTATAAAGTCACCATAGAAGTTCCATATTTAATCATCTTTACAGCTGTAAAGATGTACAGTTTTAATCATGAAAGAAGTAATAGGCCGTTCATGTACAGCAGAAGTTCCATTGTTGTAACTATGATTAGCATCAAACTTCAGTTTTTGTTTTAACTTTAATTAGGAATAGTGGAGAAGGATTTTTGATGTATGTGGTGATATATGTGTCCTATATGAATGAATTTGATTTGAGATTGTGGGCATTTAAATTTCG

Ace file of the UniGene sp_v3.0_unigene3082

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] gb\|ACE79041.1\| At4g35880 [Arabidopsis thaliana] dbj\|BAH19546.1\| AT4G35880 [Arabidopsis thaliana] gb\|AEE86584.1\| aspartyl protease family protein [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Aspartic-type endopeptidase/ pepsin A	-	-	1.443e-08	-

Source	Gene names
Sma3	AT4G35880; AT4g35880; At2g17760; At3g51330; At4g35880; B1274F11.42; F24M12.370; F24M12.390; GSVIVT00011732001; H0209A05.1; OJ1540_H01.13; OSJNBb0071D01.4; Os02g0751100; Os04g0228000; Os09g0542100; OsI_08957; OsI_14476; OsI_24487; OsI_32231; OsJ_08401; OsJ

Source	GOs	Term	Type	Identity
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA/RNA-binding protein Alba-like	IPR002775	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G35880.1	Eukaryotic aspartyl protease family protein chr4:16993339-16995721 FORWARD LENGTH=524	46%
RefSeq	Arabidopsis thaliana	NP_195313.2	aspartyl protease family protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002310698.1	predicted protein, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P2

Fln msg: your sequence is longer than subject: 548 - 165

Fln protein: MENSTLGFICHILFFIALGLRYSNGQSYSLQMYHKFSPEVKEWMTWRHGLDTDGWPTEGRNEYYKALYHHDSARHDRKLGDYPSLTFLAGNMTNSFSQLGYLFYTMVQVGTPNVTLLVALDTGSDVFWVPCDCQECAPTSAPYYGLDININLQSYSPSASQTSKPVTCDNTLCDLQKKCSKSSDQCPYNVAYVSANTSTSGTLVEDILYLIPGNGSRNGTVVKAPITFGCGKVQTGSFLQGAAPYGLLGLGVEPISVPHILYKSGLVSNSFSMCFPLNSSVGRFTFGDKVTSDQKETPFIIDQTHPTYYLGVKEFYVGTALVKTEFQALFDTGTSFTYLVDSVYKSLTSNYHLQRKASPLAIDDSNIPFEFCYEISNSQSINQGPNISFNFNGGNNFSAIQPLVLIGDENGKLVGYCLAVLQSSTVTIIGQNFMAGYQLVFDREQLKLGWKEANCNDLEYSSSAASAPSSLTPLQSPLAPSSVDDSEHKSNTTTNSSTGSPPKQSISPDALPANPNAIGNDATHLSLFFLCNVISFTVTITILTNLF*

Protein Length: 549

Fln nts: CCCCAAGAAATCCGCCTCTAGTAAGTCAACATTAGGACGAATCACCTCTGTCTGTTGTTGAAGCGGGCCCGTGGCATCCATAGTTCCCGATCCATCCCCTCCACATCCATAGAATCCTCTCATCGAGTCATCTAGTTGGAATTGAAAATTGAAATTGAGTTAATAGTGCCTTGCATGTGCTTGTGGGGTTGGGGAACAGAGGTGGGTCATGGTCTTTTTGATCCGGGAAGCATCCCAAGCCAAAATAATATATTTAAGGGAAACAGTGATTAAATTTTTAGCAATAGCCTGTTAGCGTTCCTTTATTTGCCAACGAAAAAGGGCAAGGAAGACTTATCTATCGAGTTGAAAACCACATTCCAACTGCTACCAACACTAGCAGCCTTTTAGTCTATGACTACATTTTTGCCTACTACTACCATTCAACTTCCCTTAGTACGGTCATGGTCGAGTCATAGCACATCACAGCACAGAAATCTTCTTCTGAGAACTTTCTGATTCACACCTATCTCATTCCCTCAACTTGGTTACATACAATACAATTCAATCAAATCAAAATGCAAGGATTCTTGCATTCCCATCGTGAAATAGGCCATCACTCATTAATAGTGGATTTTGATCGGGTTAAAACATGCAAAGAGTCATTGTATAATCTACCCTGCACAACAAGAAGAACAGGGTAGAAGAGGATTGTTGTCGTTAAGAGTGGTAACCAGTTAGCGCTAGCAGGGCTCTCTGTTGGCTCTGTGCACATTTGTTGTACTTTGCTTTTCGTC_-_ATGGAAAACTCAACTTTGGGCTTTATTTGTCACATACTATTCTTTATAGCTCTTGGCTTACGGTATTCGAATGGGCAATCCTACAGTTTGCAGATGTATCATAAATTTTCTCCTGAAGTAAAAGAGTGGATGACATGGAGACATGGATTAGATACAGATGGGTGGCCTACGGAGGGAAGGAACGAGTATTACAAAGCATTGTATCATCATGATTCTGCTCGCCATGATCGTAAATTGGGCGACTACCCGTCGCTTACATTTCTAGCAGGCAACATGACAAACTCATTTTCACAGTTGGGATATTTGTTCTACACCATGGTTCAAGTGGGCACTCCCAACGTAACATTACTTGTAGCACTTGACACGGGCAGTGATGTGTTCTGGGTGCCTTGTGATTGCCAGGAGTGTGCTCCTACTTCTGCACCTTACTATGGATTAGATATCAATATCAATTTACAGAGTTACAGTCCATCAGCCTCACAGACAAGCAAGCCAGTTACTTGTGATAATACTCTGTGTGATTTACAAAAGAAATGCTCCAAATCTAGTGATCAATGCCCATACAACGTCGCATATGTCTCTGCAAATACTTCCACTTCAGGAACTTTAGTGGAGGATATTCTTTATCTGATTCCTGGAAATGGGTCCCGGAATGGAACAGTAGTGAAGGCACCTATCACCTTCGGGTGTGGAAAGGTACAAACGGGCTCATTTCTACAAGGTGCAGCACCATATGGTCTACTTGGGCTTGGCGTTGAACCTATCTCTGTCCCTCATATTTTATATAAATCAGGCCTTGTATCAAATTCTTTCTCTATGTGCTTCCCTCTGAATTCATCTGTCGGAAGGTTTACCTTTGGAGATAAAGTGACTTCAGACCAAAAGGAAACCCCTTTTATTATTGATCAAACACACCCAACCTATTATTTAGGTGTGAAGGAATTTTACGTGGGAACCGCTCTCGTCAAAACAGAATTTCAAGCCCTTTTTGACACTGGCACCTCATTTACATACTTGGTTGATTCAGTTTACAAAAGCCTTACATCAAATTATCATCTGCAGAGGAAAGCCTCTCCATTGGCAATTGATGATTCAAACATTCCTTTCGAGTTTTGTTATGAAATCAGCAACAGTCAAAGCATTAATCAAGGGCCTAATATATCTTTCAACTTCAATGGAGGAAACAACTTTTCTGCTATTCAACCATTAGTCCTTATTGGTGATGAGAATGGGAAGTTGGTAGGTTACTGTTTGGCAGTGCTTCAGAGCTCGACAGTCACAATTATTGGTCAGAATTTCATGGCAGGTTATCAACTTGTCTTTGACCGGGAGCAGCTCAAACTGGGGTGGAAGGAAGCTAACTGTAATGATTTGGAGTATAGCAGCAGTGCAGCGTCAGCACCATCAAGTTTGACACCACTTCAGTCACCCCTTGCCCCTTCCTCGGTCGATGACAGCGAACACAAATCTAATACAACTACAAATAGTTCAACAGGGTCACCTCCGAAGCAGTCCATATCTCCTGATGCTCTACCAGCTAATCCTAATGCCATCGGGAATGATGCAACCCATTTAAGCTTATTTTTTCTGTGCAATGTCATCTCATTTACAGTCACCATCACCATTCTTACAAATCTCTTTTAA___ATCATTTATGCACAATGAAGATGTCTATGGTGACATGAGTTTTTCCTTCCCATTATTTTTATTGTTCCAATTTTTATAAAGTCACCATAGAAGTTCCATATTTAATCATCTTTACAGCTGTAAAGATGTACAGTTTTAATCATGAAAGAAGTAATAGGCCGTTCATGTACAGCAGAAGTTCCATTGTTGTAACTATGATTAGCATCAAACTTCAGTTTTTGTTTTAACTTTAATTAGGAATAGTGGAGAAGGATTTTTGATGTATGTGGTGATATATGTGTCCTATATGAATGAATTTGATTTGAGATTGTGGGCATTTAAATTTCG

Fln Alignment:

Contig3082___MENSTLGFICHILFFIALGLRYSNGQSYSLQMYHKFSPEVKEWMTWRHGLDTDGWPTEGRNEYYKALYHHDSARHDRKLGDYPSLTFLAGNMTNSFSQLGYLFYTMVQVGTPNVTLLVALDTGSDVFWVPCDCQECAPTSAPYYGL
D5A9P2______________MESPTVSFIYSLILFTSLGFQNSNGQSYSLQMYHKFSNEVKEWMTWRHGLDTDGWPVEGSNEYYKALYHHDSARHGRKLADHPSLTFLEGNETVEIPQLGFLFYSMVQVGTPNVTLFVALDTGSDVFWVPCDCQACAPTSAASYGL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
840	11			88	0.923564
843			11	88	0.923564
844		88		11	0.923564
2000	33		66		0.997452
2004			33	66	0.997452
2321	90		10		0.90298
2425	85	14			0.993533
2677	75		25		0.996473
2679	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain