SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3056

Length: 2752 nt

UniGene Fasta

>sp_v3.0_unigene3056
AGGAAAAAGAGACAGCTCAAGGCAGTTGTGGCCGAAGAATCTGCTGCCCAAAGATCCCTCACTCAGGGGTCACGAGTCCAACCACCTGCTGGAGTACCCGATTATGCCCACGAGAAGGACAAACAGACACAAAGTCAGGAAGCACCAGAGCCAGTTTCAGGTGAACTGACAGAGCATCAGACAGCAACCCCAATTCCAAAGAGGAAACTGCTTGAGCTTGTCCTTGATAAGCTTCAAAAAAAGGACACATACGAAGTGTTTGCTGAACCCGTTGATCCTGAGGAGGTACCTGATTACTATGATTTCATTAAAAACCCAATGGATTTTAGTACTATAAGGAAGAAACTTGCAAAAGGAGTCTATGTGAGTTTGGAGCAATTTGAGGATGATGTTTTCCTGATCTGTAGCAATGCAATGAATTACAATGCAGTAGGTACCATCTACTACAGAAAGGCTCGTGCTATACAGGAACTGGCAAAAAAGTCTTTTCAGATATTGCGGTGTGATCCTGAAAATTTTGAATTGGAGCATGAATTCCCCTCAAATTCAAAATCTGGTTTTGCCACCAAGAACTTTACAAATAAGGCCACATTGAGAAAATCACATTTTGAGTCTACTGGTTCAGACTTTACCTTCAGGTGCAACTCTTGCTACAGGTGGAAATGATGCTAACTTGTCTAACACCTCTCTGCATGATGCTCCGAAGGTAAGGAACACAGGGTCTGTATATTCAAATGGGACTGTCTATCAAGGGCATAACAATGATGATCAAAATAGTTCAGCAGTTTATGCCAAAGCTGAGAAATCGGAGAAATTTTCAGCATCCACATTGAAGGGAACGGTGGTGAAAGATGGGAGAAGAGCTCTTTTATGGGAAGAAGAACGACGTGACACTTACAAGCCTTGGAACCTTTTAGTTAATGGAGATGAATCAATACTTGCCATCCTTTGTGGAGAGCCAAAACAGCTCATACCTATTGGTATGCAGTCAGAGTACATGTATGTACGAAGTCTTTCTCATTTTTCTGCGGGACTTGGACCTGTAGCCTGGAAAATTGCAGCACAGAAAATAAAGAGAGCTCGACCTTCTGATTGGACATCTGGCCTACGGCATGTTAATGATCAGACCATTACTTCTGTTAATTTATCATCATGCGATAAAAGCAGACCTCAACTAAACACAGTTTCTCCTGCACCATTGCTGATTGACAAAAGTGAAAATAGGGTTAGGCTCAATAATGATGTCGCTGCCCAATATGGCAGGGATGAAGGGTTTGTTCAAAAGGGAACTTTTGAAGGCCAGTCCAATCAGTCAACTTCTCCTATGTCTACTGTCACTGCAAAGTCTACTACAAACTCTGATGCACATCAATCATCAGCAAATTGCTTGTCATTACCAAATGCCCAATCTGTTAAATCGCAGTTTGACCATGAGCCAAATGTTGAGTTGCCTTTGGAAGGGAAAAAACAGCTTCAGGAGAAATCCACTTTACCTATCGTTGAATCTGGCAACTTAACAATGCCAGGGACCAAATTTGCTTCGGAGGTATCCCAATCTAGATTGCTTGAAATTGTTTCAAAAAATAATAAGCTTATGCAATTGATGCTCTCTAAACAGTCCAAGGAAGCACAGCCTGTCAAGAGTTTCCAAGTGGCAGATTCTCAAAGTGTTGTCACCGATGGTGGTATCTCCAGAGAAGGCAGTGGCTCATCAAAACTACTAAGAAGTGCCGGCAGTACTGATGTTGCAGACACTACAGGCAGAACTTGTATATACAACCATCAAGATGGGTACAGAGCTGTCTGCTCCACTCAACATGCTGGTCAAACCGTATCTGTCAAGGATATAAACAGTTTGGCTAACTTGGCCAAAAACAAAATGTTGTCTCTGCAGACTAATTCCAATGCTTCGGTCAATACTCCACAGTTGTCAGTTTTATCAACATGTTCAACAAGGAACCAAGATGATAATGCAATACGGGCACAGTTACAGTCTCAAAATGCAGATTTGGTCCATGCTGATGCTAGTTCTAGATCAAAAATGCAGATTGCATCTGGTACACATTTTAACCCACAGAAAAATGAACCCCAAATAAGAACATCTTCTAGTGTTTCTCAATACATGCAACAGCAAATGTTCCTGGATATATCGTCTTATATCCAGTCACATATGAGCCAGTTCAACTCTCAGAGATCATCAATGTCTGCACAAACAATTCCACACAGTCATGAAGGACAAGTAATTGAATCACATGTTTCAGAAAAATTGGCTACTTTCAACAAGGCACACTCATCAGGGGAAAATGAATCACCTCAGTCTCATCTCCAGCCTTTGAAAGGTAAAATTTTGGAACAGCCTTTGCATCAGACGTCAGATATCTCTCATTCTTTATCATCTGACATTAATGTGGAATGTCAGAGCTCCAGATCTCCAGTTAGGCAGTCTTCTGGAAAGTTGGTTGATTCCCAACAACCTAATTTGATCCTACAGCTTTGATTTGTTCATTACAAAAGACCAGAGCTACTAATTCTATTCCTTTTATTGAAGTGTTAGGATATAATGCTCATACTAGACGACGATGAAAATGGGATTTGCTTCAAGGAATCCACTGTGTTGTAAAACAACTGTACAATTTATGTATTAATTATTTCAGTCAGAAGCAATCTATCGTTGTATTTTTTACCTCAAAAATACAATTTTATTATTGCAGGCAGAAATTCATTTTCAAGTTTTTGCTTGTAATGTAACACC

Ace file of the UniGene sp_v3.0_unigene3056

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9SV90_RICCO	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Bromodomain-containing protein	-	-	5.869e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone acetyltransferase.	EC:2.3.1.48	-	1.359e-11	-

Source	Gene names
Sma3	At1g20670; At1g76380; At1g76380/F15M4_12; At5g55040; BRD1501; BRD901; BRD902; BRD903; BRD904; BRD918; F15M4.12; GSVIVT00002889001; GSVIVT00027307001; GSVIVT00036274001; LOC_Os03g03870; MtrDRAFT_AC136139g27v2; OJ1210_A07.24; Os03g0130800; Os09g0550000; OsI

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20670.1	DNA-binding bromodomain-containing protein chr1:7164537-7167933 REVERSE LENGTH=652	48%
RefSeq	Arabidopsis thaliana	NP_173490.1	DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002300638.1	bromodomain protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: your sequence is shorter than subject: 222 - 630

Fln protein: RKKRQLKAVVAEESAAQRSLTQGSRVQPPAGVPDYAHEKDKQTQSQEAPEPVSGELTEHQTATPIPKRKLLELVLDKLQKKDTYEVFAEPVDPEEVPDYYDFIKNPMDFSTIRKKLAKGVYVSLEQFEDDVFLICSNAMNYNAVGTIYYRKARAIQELAKKSFQILRCDPENFELEHEFPSNSKSGFATKNFTNKATLRKSHFESTGSDFTFRCNSCYRWK*

Protein Length: 223

Fln nts: AGGAAAAAGAGACAGCTCAAGGCAGTTGTGGCCGAAGAATCTGCTGCCCAAAGATCCCTCACTCAGGGGTCACGAGTCCAACCACCTGCTGGAGTACCCGATTATGCCCACGAGAAGGACAAACAGACACAAAGTCAGGAAGCACCAGAGCCAGTTTCAGGTGAACTGACAGAGCATCAGACAGCAACCCCAATTCCAAAGAGGAAACTGCTTGAGCTTGTCCTTGATAAGCTTCAAAAAAAGGACACATACGAAGTGTTTGCTGAACCCGTTGATCCTGAGGAGGTACCTGATTACTATGATTTCATTAAAAACCCAATGGATTTTAGTACTATAAGGAAGAAACTTGCAAAAGGAGTCTATGTGAGTTTGGAGCAATTTGAGGATGATGTTTTCCTGATCTGTAGCAATGCAATGAATTACAATGCAGTAGGTACCATCTACTACAGAAAGGCTCGTGCTATACAGGAACTGGCAAAAAAGTCTTTTCAGATATTGCGGTGTGATCCTGAAAATTTTGAATTGGAGCATGAATTCCCCTCAAATTCAAAATCTGGTTTTGCCACCAAGAACTTTACAAATAAGGCCACATTGAGAAAATCACATTTTGAGTCTACTGGTTCAGACTTTACCTTCAGGTGCAACTCTTGCTACAGGTGGAAATGA___TGCTAACTTGTCTAACACCTCTCTGCATGATGCTCCGAAGGTAAGGAACACAGGGTCTGTATATTCAAATGGGACTGTCTATCAAGGGCATAACAATGATGATCAAAATAGTTCAGCAGTTTATGCCAAAGCTGAGAAATCGGAGAAATTTTCAGCATCCACATTGAAGGGAACGGTGGTGAAAGATGGGAGAAGAGCTCTTTTATGGGAAGAAGAACGACGTGACACTTACAAGCCTTGGAACCTTTTAGTTAATGGAGATGAATCAATACTTGCCATCCTTTGTGGAGAGCCAAAACAGCTCATACCTATTGGTATGCAGTCAGAGTACATGTATGTACGAAGTCTTTCTCATTTTTCTGCGGGACTTGGACCTGTAGCCTGGAAAATTGCAGCACAGAAAATAAAGAGAGCTCGACCTTCTGATTGGACATCTGGCCTACGGCATGTTAATGATCAGACCATTACTTCTGTTAATTTATCATCATGCGATAAAAGCAGACCTCAACTAAACACAGTTTCTCCTGCACCATTGCTGATTGACAAAAGTGAAAATAGGGTTAGGCTCAATAATGATGTCGCTGCCCAATATGGCAGGGATGAAGGGTTTGTTCAAAAGGGAACTTTTGAAGGCCAGTCCAATCAGTCAACTTCTCCTATGTCTACTGTCACTGCAAAGTCTACTACAAACTCTGATGCACATCAATCATCAGCAAATTGCTTGTCATTACCAAATGCCCAATCTGTTAAATCGCAGTTTGACCATGAGCCAAATGTTGAGTTGCCTTTGGAAGGGAAAAAACAGCTTCAGGAGAAATCCACTTTACCTATCGTTGAATCTGGCAACTTAACAATGCCAGGGACCAAATTTGCTTCGGAGGTATCCCAATCTAGATTGCTTGAAATTGTTTCAAAAAATAATAAGCTTATGCAATTGATGCTCTCTAAACAGTCCAAGGAAGCACAGCCTGTCAAGAGTTTCCAAGTGGCAGATTCTCAAAGTGTTGTCACCGATGGTGGTATCTCCAGAGAAGGCAGTGGCTCATCAAAACTACTAAGAAGTGCCGGCAGTACTGATGTTGCAGACACTACAGGCAGAACTTGTATATACAACCATCAAGATGGGTACAGAGCTGTCTGCTCCACTCAACATGCTGGTCAAACCGTATCTGTCAAGGATATAAACAGTTTGGCTAACTTGGCCAAAAACAAAATGTTGTCTCTGCAGACTAATTCCAATGCTTCGGTCAATACTCCACAGTTGTCAGTTTTATCAACATGTTCAACAAGGAACCAAGATGATAATGCAATACGGGCACAGTTACAGTCTCAAAATGCAGATTTGGTCCATGCTGATGCTAGTTCTAGATCAAAAATGCAGATTGCATCTGGTACACATTTTAACCCACAGAAAAATGAACCCCAAATAAGAACATCTTCTAGTGTTTCTCAATACATGCAACAGCAAATGTTCCTGGATATATCGTCTTATATCCAGTCACATATGAGCCAGTTCAACTCTCAGAGATCATCAATGTCTGCACAAACAATTCCACACAGTCATGAAGGACAAGTAATTGAATCACATGTTTCAGAAAAATTGGCTACTTTCAACAAGGCACACTCATCAGGGGAAAATGAATCACCTCAGTCTCATCTCCAGCCTTTGAAAGGTAAAATTTTGGAACAGCCTTTGCATCAGACGTCAGATATCTCTCATTCTTTATCATCTGACATTAATGTGGAATGTCAGAGCTCCAGATCTCCAGTTAGGCAGTCTTCTGGAAAGTTGGTTGATTCCCAACAACCTAATTTGATCCTACAGCTTTGATTTGTTCATTACAAAAGACCAGAGCTACTAATTCTATTCCTTTTATTGAAGTGTTAGGATATAATGCTCATACTAGACGACGATGAAAATGGGATTTGCTTCAAGGAATCCACTGTGTTGTAAAACAACTGTACAATTTATGTATTAATTATTTCAGTCAGAAGCAATCTATCGTTGTATTTTTTACCTCAAAAATACAATTTTATTATTGCAGGCAGAAATTCATTTTCAAGTTTTTGCTTGTAATGTAACACC

Fln Alignment:

Contig3056___IPKRKLLELVLDKLQKKDTYEV----FAEPVDPEEVPDYYDFIKNPMDFSTIRKKL-AKGVYVSLEQFEDDVFLICSNAMNYNAVGTIYYRKARAI
B8LPU6______________LPNRQALHAFMRSLFKAMTEHADAWPFKDPVDPRDVPDYYDIIKDPMDLKTMSKRLDSEQYYVTLDMFVADVKRMFTNARTYNTPETIYYKCANRL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1136	14	85			0.993533
1138			14	85	0.993533
1139		85		14	0.993533
1294		33		66	0.997452
1377	80			20	0.995493
1926	33	66			0.997452
1928		66	33		0.997452
1929		66	33		0.997452
1930	66		33		0.997452
2694		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain