SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3032

Length: 1856 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3032 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NWL2_PICSI	-	-	0.0	76%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	GrpE protein homolog	-	-	4.2039e-45	-

Source	Gene names
Sma3	AT4g26780; At4g26780; At4g26780/F10M23_120; At5g55200; F10M23.120; GSVIVT00027261001; GrpE1; GrpE2; MCO15.15; MGE1; MICPUCDRAFT_7324; MICPUN_97757; OJ1190_B07.11; OSJNBa0009H03.28; OSJNBa0062G05.3; OSTLU_14947; Os08g0338700; Os09g0284400; OsI_28865; OsI_3

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	adenyl-nucleotide exchange factor activity	GO:0000774	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	chaperone binding	GO:0051087	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GrpE nucleotide exchange factor	IPR000740	-	-
Sma3	Flavodoxin-like fold	IPR003680	-	-
Sma3	Uncharacterised protein family UPF0041	IPR005336	-	-
Sma3	GrpE nucleotide exchange factor, head	IPR009012	-	-
Sma3	GrpE nucleotide exchange factor, coiled-coil	IPR013805	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G26780.1	AR192 Co-chaperone GrpE family protein chr4:13485066-13486560 REVERSE LENGTH=327	48%
RefSeq	Arabidopsis thaliana	NP_567757.1	molecular chaperone GrpE [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002321532.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWL2

Fln msg:

Fln protein: MNTSRAITGFLRKAFVQSRGFTVPTSPLTPRTCHRVHDIIQSPHKWSVSEKMQLFPQPRSLCLTPTSSPFSSVASPEVSQKESNPVSPAEGTVANKGKETVEPTSKKQEKPKKTAQTKESDSESEISSDEEKEISTEDLIRIVQEKEDLLKKKHNEIKVMQEKVLRSYAEAENVMDRARREAENTKKFAIQSFAKGLLDVADNLSRASSVVKESFSKIDASKDSSGAAPLLKTLLEGVAMTEKQLSDVFNKHGVERFDPLNEQFDPHMHMAVFQVQDASKQPGSVAVVLKPGYMLHDRVIRPAEVGVVEAVESEAAGNSEPSA*

Protein Length: 325

Fln nts: GAGGTGTTAATTCTAATGTTCTGTAATCCCTGTACAGCGGAAGAGCAATTTAGGGTTCCACGGGTAGCAATTTAGGGTTCCACGGATAGCTGTAGCGAGGAATACCTCTTTGGGTTCTTACAATATTATCTCCTAGCTGACCCATAATTATGTATTTCATATTACGTCTATAGCTGGGGAGGGATTTATAAAGTTTAACCAATTTCAGTTGATCAGCCCACATTGGCAGATGAAAAGGCAATATTAGAAGTACTACCACTTGTTTATCCAGTTGATACAGCAGAAGCAAGGGTGGAATTAGCTCAAATTAATTAATTAATTTGAATAAGAAGCTTTTTCACCTGCATTACTGCCAAACATTTATCATCCAGTTGGAGTTCGAGCTGTAAATCTGGCAGAAGGCTTCGTATCCAGAAAACCAAGGCTTCTACTTCTTTTAAGAATATAACTCTGGCACC_-_ATGAACACATCCAGAGCTATAACGGGTTTTTTGCGAAAGGCTTTTGTTCAATCTAGGGGTTTCACAGTACCCACCTCTCCTCTGACCCCGCGAACATGCCACAGAGTACACGATATCATTCAGTCGCCACACAAGTGGAGTGTGAGTGAAAAAATGCAATTATTTCCTCAACCCCGTTCTCTATGTTTAACTCCCACATCATCTCCTTTCTCGTCTGTTGCATCACCAGAAGTATCACAGAAAGAATCAAATCCAGTTTCACCTGCGGAGGGTACAGTGGCTAATAAAGGCAAGGAAACCGTTGAGCCCACCAGTAAAAAACAGGAGAAGCCTAAGAAAACTGCACAAACAAAAGAGTCAGATTCAGAATCAGAAATCTCATCAGATGAAGAGAAAGAAATTTCAACAGAGGATTTAATTAGAATCGTTCAGGAGAAAGAGGATTTATTGAAGAAAAAACACAATGAGATTAAGGTGATGCAGGAGAAGGTTCTTCGGAGTTATGCAGAAGCAGAGAATGTCATGGATAGGGCAAGGCGCGAGGCAGAAAATACAAAAAAGTTTGCAATACAGAGCTTTGCCAAGGGCCTCTTAGATGTTGCTGATAACTTGTCAAGAGCATCATCTGTTGTTAAAGAAAGCTTTAGCAAGATAGATGCTTCCAAAGATTCAAGTGGAGCGGCACCACTACTGAAAACACTTTTGGAAGGGGTGGCGATGACTGAAAAGCAGCTTTCAGATGTGTTTAACAAACACGGAGTTGAAAGGTTTGATCCACTAAATGAACAGTTTGATCCTCATATGCATATGGCAGTATTTCAAGTTCAAGATGCTAGTAAGCAGCCTGGTAGCGTCGCTGTGGTTTTGAAGCCTGGGTACATGCTTCATGACAGAGTAATACGTCCTGCTGAGGTTGGTGTTGTGGAGGCCGTTGAAAGTGAAGCTGCGGGAAATTCTGAGCCTTCTGCCTGA___TTTGCAGTTGGTCATCCTTATCTTCTTAATTCTTGTAGGATATCTGAAACAGCATTCAATTCCTTGCACAGTTTAAGATATCACAGTTTCAGATATCCGAATTAGAATGTAGATTTAGATGGTAGTCTTTTTTGCTTATTTCTGTCTATGAGGTCGCATTGAAGTCTCCGTTTCATGAACACAATTGCACTTGCAGTAGAATGGTGAGGGCAATTTTTTCCAGAGAAATTTTGTCAGGCTTTTTATAGCATAAGTTTGAGTATGTAGGGCCTTTCCAGCTGGTGCAAATATAAAAGATATCTTGTCCAATTCCTTGCGTCTAGTGTAGTGTACTTGTTTTCTGTTTGTGCTTTATTGGATTCTTTTGCTTCTGCTTGAGAGGGGTGTCTATATATTTAGTATACGTTATGATTCCAAATTATGCAG

Fln Alignment:

Contig3032___MNTSRAITGFLRKAFVQSRGFTVPTSPLTPRTCHRVHDIIQSPHKWSVSEKMQLFPQPRSLCLTPTSSPFSSVASPEVSQKESNPVSPAEGTVANKGKETVEPTSKKQEKPKKTAQXXXXXXXXXXXXXXXXXXXXEDLIRIVQEKEDLLKKKHNEIKVMQEKVLRSYAEAENVMDRARREAENTKKFAIQSFAKGLLDVADNLSRASSVVKESFSKIDASKDSSGAAPLLKTLLEGVAMTEKQLSDVFNKHGVERFDPLNEQFDPHMHMAVFQVQDASKQPGSVAVVLKPGYMLHDRVIRPXXXXXXXXXXXXXXGNSEPSA
A9NWL2______________MNTSRAVTGFLRKCLLQSRSLTVPTAPLVSRRCQTVHDIIQSPHKWIASEKMQFFSQPRSICLTPKSSLFSSVASPEVSQKESNPVSSVESTVASKGEEIVEPVSQNQE-PKKAAQRKESDSESEISSDEEKELSIEDLIRLVQEKELLLKEKHKEIKVMQEKVLRSYAEVENVMDRARREAESTKKFAIQSFAKSLLDVADNLSRASSVVKESFSKIDPSKDSSGAAPLLKTLLEGVAMTEKQLSDVLKKHGVERFDPLNEQFDPNMHMAVFQVQDASKQTGSVAVVLKPGYTLHDRVIRPAEVGVVEGVESEVAGNSEPSA

SSRs (tot: 1)

Start position	End position	Sequence	Length
1536	1551	AATT AATT AATT AATT	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain