SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3019

Length: 2198 nt

UniGene Fasta

>sp_v3.0_unigene3019
CCACTGCGTAACCAGGGCTATCAACTAGCTTACCCGGCTTTCGGGCAAGGTGGCTGTGAAAACGTTATACTCCAATTCTAGAATAACTGTTCTTAAATCCTACATGCGTAGGGTTTTTATAAAGACCGAAATATTTGTATGACCTGACAAATGCATTCTTTGTGACCTGACAGATGCATTCATATCTTTCCAATCGCCAATGAAGCCATCCAACGTTCTGTTAAAATACCAAATTACACAGACCACTCAGCTCCACTGGTATCATTGAAGAATACAGGCTGCCTGTTTTTCGGAAAAAATACAGATTTCCAAAATTAATGTCCATGTGTTCGTCTAATTTCGTGAATTCATATGGGCCGTAATTCTCTCAATTTTGTTAAACCCCAGTAAATTTATCACGGTTGGGATAAATTATATTAGGATATTGGGAGCCCGCATTAACCCTAGCTTCTCTGTTCCACACTCTTTTCTCCGTTTCTCTCGACCTCATTTCTGCATTTCGATCCCTTTGCCCTCCTGCGGAAATGTTCAAAAACAGGTTACAAGAGTACGCCCAGAAGACTTCTTTGCCTTTGCCAGTTTACACCACCGTAAATGAAGGCCAAGATCATCTTCCTGAGTTCAAGTGCAGCGTGACAGTGAGCGGCACACGATATGATTCGCCTCCGGGGTTTAAATATAAGAAGGAAGCAGAGAACGCCGCCGCTCAGGTAGCGGTTGAAGATTTGCGTAAGCGGGGGTTGGATATCCACTTTAAAGAGACAAGACTACTCAAGAACGTGCTCAGCGAGCTTGCTGTAAAGAAGAACATTCCACTTCCTACTTATCAATTTACACAGGAAGGAATTGCACACTGCCCAAATTTTACAGCAACTGTACAGATTAACGGGGAGTCGTACACCGGAGCTCCTGGATACAGTAAGAAGGAGGCCGCAAGAAACGCTGCATATGAAGCAATCCGATCAATTCGCACCCAAGATTGCAACTCTTTTCCACAGATTGAACTTGATGATGAAACCGAACAAAACAATGATTCTAAGCAGGAATTCAAGGTCACCAATGCTGTATCAAAGCTACCTACTGATAACAGTACATCTAATAATCAACTATTGGTAGGAACGGGTTCTCATTCAGCTGAAAATACAGAAAAGTTGAACGTTAAGAATGTTCCTACTGTTCCAGAAAAGATAAATGTGGAGAACCCATGTGAAGTTGGAGGGGCTTCAGAAAAATCAATGGTGAAGGATTCGGGTGAAGTTGAAAATGGTAAGTCAAGTATAAATGAATCAAATCCAGGTTTAGCACCTGTAGAAAAGCCTCAACAGGATCCTATACTTGTTGAACAACATGGATTGAAAGAGGAAATGACAGATCTCATTGAAAATAAGGAACATGGATTTAAGCAGCTTGAAGGGATGCAACAAGGCAGTCAAGAGGTTGTTTTAACAGAATCGATTGTCAAGAGGATTAGAAGTGAACATGAGGATGCTGAACATACGTCTGAGAGAAAGAAAAAACTTAAAAAGAAGAGCAAGGCCAAAATGAGGAAGAGTGATGGCACAGCTTGATGCAGTCAAGAGAGTTCATTTTCAGTCTGCCTGGCATTGGTTTGTTCTCTTGCAAGCAAGGTCTTGGTTTGAACTACGCACTTGGGCATCTGTCACAATTTTGTTGTTGTCTTAGTTTCAACTGGCACTCTGGCAGCTGTCACAATTTTGTTTTCTTAGTTTCAACTAGGCGCTTCGGCATCTGTCACAATTTTGTTGTCCTTGTTATGCTGATGGCGTTGATGACTTTACCCAATTATGTAAATAAATTAACTGATCTGTTAGAATGTCAGGAGAAAGATGGACATTTTTGCAGATATTGATTATGTTTTTCTGCATTGCGTATACAAACACGTGTCTATATATAGGAATGCTTATTTTACTGGGTAAACTTCATTGGATTCAAAACTTCAACCGTTGGTCCCATAGAAGAGATTCTGCATCTTAATTATCCATCGTAACATAATCTCTGGATGGTTAATGTTTTCGTTTCTACAACATACTAAGAGGTTTTCTATCACACTGAACATTGGAAGTGTGCATGTTGCTTTTATTTGTGCCACTGAATTGCCATGGGAGAAATTCTTGACAGCCATGTATAAATCACCAAATGGTAAGTGAAATATGGATAAAATATCTTAAAATATAAGT

Ace file of the UniGene sp_v3.0_unigene3019

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA-binding protein 6 n=1 Tax=Oryza sativa Japonica Group RepID=DRB6_ORYSJ	-	-	5.0e-23	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Gene names
Sma3	GSVIVT00015092001; POPTRDRAFT_209177; POPTRDRAFT_552983; VITISV_043706; rbp2;

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUQ0

Fln msg:

Fln protein: MFKNRLQEYAQKTSLPLPVYTTVNEGQDHLPEFKCSVTVSGTRYDSPPGFKYKKEAENAAAQVAVEDLRKRGLDIHFKETRLLKNVLSELAVKKNIPLPTYQFTQEGIAHCPNFTATVQINGESYTGAPGYSKKEAARNAAYEAIRSIRTQDCNSFPQIELDDETEQNNDSKQEFKVTNAVSKLPTDNSTSNNQLLVGTGSHSAENTEKLNVKNVPTVPEKINVENPCEVGGASEKSMVKDSGEVENGKSSINESNPGLAPVEKPQQDPILVEQHGLKEEMTDLIENKEHGFKQLEGMQQGSQEVVLTESIVKRIRSEHEDAEHTSERKKKLKKKSKAKMRKSDGTA*

Protein Length: 349

Fln nts: CCACTGCGTAACCAGGGCTATCAACTAGCTTACCCGGCTTTCGGGCAAGGTGGCTGTGAAAACGTTATACTCCAATTCTAGAATAACTGTTCTTAAATCCTACATGCGTAGGGTTTTTATAAAGACCGAAATATTTGTATGACCTGACAAATGCATTCTTTGTGACCTGACAGATGCATTCATATCTTTCCAATCGCCAATGAAGCCATCCAACGTTCTGTTAAAATACCAAATTACACAGACCACTCAGCTCCACTGGTATCATTGAAGAATACAGGCTGCCTGTTTTTCGGAAAAAATACAGATTTCCAAAATTAATGTCCATGTGTTCGTCTAATTTCGTGAATTCATATGGGCCGTAATTCTCTCAATTTTGTTAAACCCCAGTAAATTTATCACGGTTGGGATAAATTATATTAGGATATTGGGAGCCCGCATTAACCCTAGCTTCTCTGTTCCACACTCTTTTCTCCGTTTCTCTCGACCTCATTTCTGCATTTCGATCCCTTTGCCCTCCTGCGGAA_-_ATGTTCAAAAACAGGTTACAAGAGTACGCCCAGAAGACTTCTTTGCCTTTGCCAGTTTACACCACCGTAAATGAAGGCCAAGATCATCTTCCTGAGTTCAAGTGCAGCGTGACAGTGAGCGGCACACGATATGATTCGCCTCCGGGGTTTAAATATAAGAAGGAAGCAGAGAACGCCGCCGCTCAGGTAGCGGTTGAAGATTTGCGTAAGCGGGGGTTGGATATCCACTTTAAAGAGACAAGACTACTCAAGAACGTGCTCAGCGAGCTTGCTGTAAAGAAGAACATTCCACTTCCTACTTATCAATTTACACAGGAAGGAATTGCACACTGCCCAAATTTTACAGCAACTGTACAGATTAACGGGGAGTCGTACACCGGAGCTCCTGGATACAGTAAGAAGGAGGCCGCAAGAAACGCTGCATATGAAGCAATCCGATCAATTCGCACCCAAGATTGCAACTCTTTTCCACAGATTGAACTTGATGATGAAACCGAACAAAACAATGATTCTAAGCAGGAATTCAAGGTCACCAATGCTGTATCAAAGCTACCTACTGATAACAGTACATCTAATAATCAACTATTGGTAGGAACGGGTTCTCATTCAGCTGAAAATACAGAAAAGTTGAACGTTAAGAATGTTCCTACTGTTCCAGAAAAGATAAATGTGGAGAACCCATGTGAAGTTGGAGGGGCTTCAGAAAAATCAATGGTGAAGGATTCGGGTGAAGTTGAAAATGGTAAGTCAAGTATAAATGAATCAAATCCAGGTTTAGCACCTGTAGAAAAGCCTCAACAGGATCCTATACTTGTTGAACAACATGGATTGAAAGAGGAAATGACAGATCTCATTGAAAATAAGGAACATGGATTTAAGCAGCTTGAAGGGATGCAACAAGGCAGTCAAGAGGTTGTTTTAACAGAATCGATTGTCAAGAGGATTAGAAGTGAACATGAGGATGCTGAACATACGTCTGAGAGAAAGAAAAAACTTAAAAAGAAGAGCAAGGCCAAAATGAGGAAGAGTGATGGCACAGCTTGA___TGCAGTCAAGAGAGTTCATTTTCAGTCTGCCTGGCATTGGTTTGTTCTCTTGCAAGCAAGGTCTTGGTTTGAACTACGCACTTGGGCATCTGTCACAATTTTGTTGTTGTCTTAGTTTCAACTGGCACTCTGGCAGCTGTCACAATTTTGTTTTCTTAGTTTCAACTAGGCGCTTCGGCATCTGTCACAATTTTGTTGTCCTTGTTATGCTGATGGCGTTGATGACTTTACCCAATTATGTAAATAAATTAACTGATCTGTTAGAATGTCAGGAGAAAGATGGACATTTTTGCAGATATTGATTATGTTTTTCTGCATTGCGTATACAAACACGTGTCTATATATAGGAATGCTTATTTTACTGGGTAAACTTCATTGGATTCAAAACTTCAACCGTTGGTCCCATAGAAGAGATTCTGCATCTTAATTATCCATCGTAACATAATCTCTGGATGGTTAATGTTTTCGTTTCTACAACATACTAAGAGGTTTTCTATCACACTGAACATTGGAAGTGTGCATGTTGCTTTTATTTGTGCCACTGAATTGCCATGGGAGAAATTCTTGACAGCCATGTATAAATCACCAAATGGTAAGTGAAATATGGATAAAATATCTTAAAATATAAGT

Fln Alignment:

Contig3019___MFKNRLQEYAQKTSLPLPVYTTVNEGQDHLPEFKCSVTVSGTRYDSPPGFKYKKXXXXXXXXXXXXDLRKRGLDIHFKETRL---LKNVLSELAVKKNIPLPTYQFTQEGIAHCPNFTATVQINGESYTGAPGYSKKEAARNAAYEAIRSIRTQDCNSFPQIELDDETEQNNDSK---QEFKVTNAVSKLPTDNSTSNNQLLVGTGSHSAEN-TEKLNVKNVPT---VPEKINVENPCEVGGASEKSMVKDSGEVENGKSSINESNPGLAPVEKPQQDPILVEQHGLKEEMTDLIENKEHGFKQLEGMQQGSQEVVLTESIVKRIRSEHEDAEHTSER
A9NUQ0______________MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAAAEAAVKKLVNQGL-LPIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAI---DPHYF-----QAESIINNGSEHPTEECDVSKSDSKIPADNWTSNNQIVGGSDSHLPANCIEKVTVENAPAVEKVSEKRNVENPCGAGEDPENSKVKNAFGAEKSIPNINHASS--VPAKHPQQDPLLARQGQLKEEIADAHPDKQHGSQEVEGKQQGSQEVDLTVSISKRSISESENAEQMSER

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
806	12		87		0.992554
808	87		12		0.992554
828		16		83	0.994512
836		16		83	0.994512
851		10		90	0.90298
865	90	10			0.90298
872	88		11		0.923564
882		88	11		0.923564
918	11			88	0.923564
922	11		88		0.923564
1023	11		88		0.923564
1050		14		85	0.993533
1053	83		16		0.994512
1224			90	10	0.90298
1253	10		90		0.90298
1263	11		88		0.923564
1275		10		90	0.90298
1289	88			11	0.923564
1290			88	11	0.923564
1309		88		11	0.923564
1311	12		87		0.992554
1340			12	87	0.992554
1343		12		87	0.992554
1376		14		85	0.993533
1383		14	85		0.993533
1443			80	20	0.995493
1501		85		14	0.993533
1534	12		87		0.992554
1545	87		12		0.992554
1568		11		88	0.923564
1572		11		88	0.923564
1577		11		88	0.923564
1820	30			69	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain