SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2973

Length: 1411 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2973

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S1W6_RICCO	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	FERONIA receptor-like kinase	-	-	7.698e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.154e-11	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	4.38e-10	-

Source	Gene names
Sma3	AT1G79620; AT2G19190; AT2G28960; AT2G28970; AT2G28990; AT4g29990; AT4g39110; AT5G37450; AT5G49760; AT5G49770; At1g30570; At1g70460; At1g79620; At1g79620/F20B17_5; At2g19190; At2g21480; At2g28960; At2g28990; At3g04690; At3g46290; At3g51550; At4g29990; At4g

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79620.1	Leucine-rich repeat protein kinase family protein chr1:29957633-29962174 REVERSE LENGTH=971	64%
RefSeq	Arabidopsis thaliana	NP_178080.2	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002323702.1	predicted protein, partial [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9B2

Fln msg: Overlapping hits, possible frame ERROR between 796 and 786, your sequence is longer than subject: 443 - 338

Fln protein: MADTYTPQNPKSGLSKGAIAGIAITIAVLTLGIVGIGFYAWKQKKRADKAIEMHRPFASWESSNRDGGGAPKLKGARWFSFAEIKKITNNFSDDNAIGIGGYGKVYRGMLDGGDMVAIKRAKQGSMQGGAEFKTEVELLSRVHHKNLVGLIGFCFEQEEQMLVYEYITNGTLAENLYGKKGIRLDWERRVSIALGSARGLTYLHELADPPIVHRDIKTANILLDANLTAKVADFGLSKLIIDGGAEEGGKGYVSTQVKxxxxxYVDPEYFTTLQLSEKSDVYSFGIVLLELITARPPIQGGKFVVRMVKAALESGGISGLQEEVMDPLLRNSAEIDTLTGFERFLGLALSCVEESGSERPSMREVVKELESILETGPGFSADSMPPRRYEYDFVKAGRSPLPYYTQDMGASDSSGNVRGKESYSELSAYSGDYTMSRPIQPM*

Protein Length: 444

Fln nts: CTATATTTAT_-_ATGGCAGATACATACACTCCACAAAATCCAAAATCGGGTTTGAGCAAGGGTGCCATCGCCGGCATAGCCATCACAATAGCTGTATTGACTCTTGGGATTGTAGGAATAGGTTTTTATGCTTGGAAGCAAAAGAAAAGAGCTGATAAAGCCATTGAAATGCACAGACCATTCGCATCATGGGAATCGAGTAATAGAGATGGTGGAGGTGCTCCTAAACTAAAAGGTGCCAGATGGTTTTCCTTCGCTGAAATAAAGAAGATTACAAATAATTTCTCAGACGATAATGCAATCGGGATTGGAGGATACGGGAAGGTGTACAGAGGAATGCTAGATGGAGGTGACATGGTGGCCATCAAAAGGGCTAAACAAGGGTCGATGCAGGGTGGAGCCGAATTCAAAACCGAGGTTGAACTTCTATCTCGAGTTCACCATAAGAACCTGGTGGGACTTATTGGTTTTTGCTTTGAGCAAGAAGAACAAATGCTTGTTTACGAGTACATCACAAATGGAACACTTGCAGAAAATCTCTATGGTAAAAAGGGTATTCGGCTTGACTGGGAAAGAAGAGTTAGTATAGCACTGGGGTCTGCTCGGGGATTGACATATCTGCACGAGCTTGCCGATCCACCCATAGTACACAGAGACATCAAAACGGCTAACATATTGTTGGACGCGAATCTGACCGCCAAGGTAGCAGATTTTGGTCTTTCCAAACTCATTATTGATGGAGGAGCTGAGGAAGGAGGCAAAGGCTATGTCTCAACTCAAGTCAAAxxxxxxxxxxxxxxxTACGTGGATCCAGAGTACTTCACAACGCTGCAGCTCAGCGAGAAGAGCGACGTCTATAGTTTCGGTATTGTGTTGCTGGAGCTCATTACAGCAAGGCCCCCAATTCAGGGCGGGAAATTCGTAGTCAGAATGGTGAAAGCAGCCTTGGAGAGCGGGGGAATAAGTGGTTTGCAGGAGGAGGTAATGGATCCGTTGTTAAGAAATTCTGCTGAGATTGATACCCTCACAGGGTTTGAGCGGTTCTTGGGCTTGGCGTTGAGCTGCGTTGAGGAATCAGGTTCCGAGCGACCGTCGATGAGGGAAGTAGTAAAGGAGCTGGAATCGATTTTGGAAACGGGGCCAGGTTTCTCTGCAGACTCCATGCCACCACGGAGATATGAGTATGATTTTGTTAAGGCTGGACGGTCTCCACTTCCTTATTATACTCAAGATATGGGAGCGAGCGATTCCAGTGGAAATGTGCGAGGAAAGGAAAGTTACAGTGAATTGTCTGCATATAGCGGAGACTATACCATGTCTCGGCCTATCCAGCCCATGTAA___CTGGTACTTGTCATATTCTTAACCCATTTTGAAAATTGGGATCCGGAATAACAATTTTTGTATTTTTAGTAAAC

Fln Alignment:

Contig2973___GIVGIGFYAWKQKKRADKAIEMHRPFASWESSNRDGGGAPKLKGARWFSFAEIKKITNNFSDDNAIGIGGYGKVYRGMLDGGDMVAIKRAKQGSMQGGAEFKTEVELLSRVHHKNLVGLIGFCFEQEEQMLVYEYITNGTLAENLYGKKGIRLDWERRVSIALGSARGLTYLHELADPPIVHRDIKTANILLDANLTAKVADFGLSKLIIDGGAEEGGKGYVSTQVKxxxxYVDPEYFTTLQLSEKSDVYSFGIVLLELITARPPIQG-GKFVVRMVKAALESGGISGLQEEVMDPLLRNSAEIDTLTGFERFLGLALSCVEESGSERPSMREVVKELESIL---ETG
D5A9B2______________GNLRLGFYASKRKKRA---------------RSPDDVCVLNIKCPRRFSSEELRRVTNDFSNTNVIGIGGCGRVYKAMLDDGQVVAIKRGEQGSMLWKVGFRSEIELLSRFHHNNVLDLIGFCVERGERMLVYNYIPNGSVNDILLGKKEIQLDWGSRVRIALGSARALEYLHYDVNPRVIHRNIKSTNILVDDYLTAKVAHFDLAKILPYGGDSQ----VISTQIAxxxxYLDPEYLSTGQLSLNSDVYSFGVLLLELITARPAREATGGLLVTVVKTSLETWGISVLKEELMDPFLKDS---------------LLTCVQELGSQRPSMSDAVKELEAILAATETG

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
352	25	75			0.996473
385	25		75		0.996473
391	25		75		0.996473
418		25		75	0.996473
427	75		25		0.996473
509	80		20		0.995493
631	40	60			1.0
694		66		33	1.0
750	66	33			1.0
833	50	50			1.0
864	80		20		0.995493
899	80	20			0.995493
900	80	20			0.995493
929	20		80		0.995493
935	80		20		0.995493
1000	87		12		0.992554
1001	12			87	0.992554
1022		87		12	0.992554
1052	12		87		0.992554
1062	12		87		0.992554
1073	87		12		0.992554
1080		12	87		0.992554
1085	87	12			0.992554
1106	71		28		1.0
1132		71		28	1.0
1136	28		71		1.0
1137		71		28	1.0
1168			85	14	0.993533
1201	16		83		0.994512
1216	40	40	20		1.0
1224	25	75			0.996473
1231		50		50	1.0
1256		50		50	1.0
1275			25	75	0.996473
1289		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain