SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2951

Length: 1299 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2951

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gb\|AAL36394.1\| unknown protein [Arabidopsis thaliana] gb\|AAQ89668.1\| At1g77230 [Arabidopsis thaliana] dbj\|BAD43411.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAD43428.1\| hypothetic	-	-	2.0e-39	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	Gene names
Sma3	At1g77230; GSVIVT00015465001; Os02g0553500; OsI_07631; OsJ_07114; P0470G10.9; POPTRDRAFT_848028; RCOM_0561320;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Transcriptional coactivator p15	IPR003173	-	-
Sma3	ssDNA-binding transcriptional regulator	IPR009044	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADB4

Fln msg: your sequence is longer than subject: 275 - 126

Fln protein: MQMVWKKNKRSRTLQPCPANLPFQSEPDDEPRSPAAKTHPIEESGNSLAFSELLQSQGNSLAEEGKYVAALGKWEAALALTPERAVLHEQKAQVLLEISETWKALQAATRATELQPSWPEAWVTLSRAQLNFGEPELSVQSAKKALELQPNCKDAQDDMGAAVHLIANKRQLEQNGLKVAQFRYTVGDTEHGAFGLPENSENISLTSHGPVEKSALEHVGKSDMLGNCFEEMQEIKLDPTDEDDPKMLEGRLLCLSETGGLSVELKDEDNTNRT*

Protein Length: 276

Fln nts: TTGATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAGGATCGTTGCTGCAGAATTGATTGTTGGAAGCTGGGAGCCTCACATCAAGGAAGAAAACAGGTTAATTCTATTCAGTCTGATTATCTAACCACAGACTCACTATTCTTCAATAGTTTGAAAATCAAAG_-_ATGCAGATGGTATGGAAGAAAAACAAGCGCTCGCGTACTCTCCAGCCCTGCCCAGCAAATCTTCCTTTTCAATCCGAACCTGACGATGAACCCCGATCCCCTGCTGCTAAAACACACCCAATTGAGGAATCTGGCAACAGCTTGGCTTTTTCAGAGCTACTCCAGTCCCAAGGAAACAGCTTAGCCGAGGAAGGAAAATATGTGGCAGCACTTGGAAAATGGGAAGCAGCACTTGCATTGACTCCTGAAAGGGCAGTATTACATGAGCAAAAGGCACAAGTCTTGCTTGAGATCAGTGAAACATGGAAAGCCTTGCAGGCAGCCACACGTGCCACAGAGTTACAACCTTCTTGGCCGGAGGCATGGGTGACTCTTTCAAGGGCACAGCTGAATTTTGGAGAGCCAGAACTTTCTGTTCAAAGTGCTAAGAAGGCTTTAGAGTTGCAGCCAAATTGCAAGGATGCTCAAGATGATATGGGAGCTGCAGTGCATCTTATTGCTAATAAGAGACAACTTGAGCAGAATGGCTTAAAAGTAGCTCAATTTCGTTATACAGTTGGTGATACTGAACATGGGGCTTTTGGCCTACCTGAAAATTCAGAAAACATATCTCTGACATCACATGGACCTGTAGAAAAGTCTGCTTTGGAACATGTAGGGAAGAGTGACATGCTTGGGAATTGTTTTGAGGAAATGCAAGAGATTAAACTAGACCCAACTGACGAGGATGACCCCAAAATGTTAGAGGGCAGACTACTGTGTCTGAGTGAAACAGGAGGGTTGTCAGTTGAACTCAAGGACGAGGATAATACAAACAGAACCTAA___AGCTGCCATAATATATTTAATATTGAAGACCTAGTAATAGAAATGTAGAAATATGAGAATGAAACTGTAAATATTCTGTATTTGGGATGTATGCTATCAAGAGCAAGCATTACTTTAACAAAAAATTGAGAATCATAGGGGAGATTCCTGTGATTAACAAACTGGAATTTTCCTTTGCTAAATGCATGTATCAAGAAAGTGCCATTAATTGATTGCAACGGTGAGGAGTCAAATTGCACTGAAATTGGTTTTCTAACTTTTCATTGATTTCTGGTGGAAGTATATAGAAAAGAAGGTTTA

Fln Alignment:

Contig2951___MGAAVHLIANKRQLEQNGLKVAQFRYTVGDTEHGAFGLPENSENISLTSHGPVEKSALEHVGKSDMLGNCFEEMQEIKLDPTDEDDPKMLEGRLLCLSETGGLSVELKDEDNTNRT*SCHN
D5ADB4______________MGAAVHLIANKRQLEHTGLKVAQFRYTVGDSENEAFYPAVNPENLSGTSHGHVENPALQHVGKSDMPENCFEEMQEIKLDPTDEDDPKMLEGRLLFLSEKGGSSVELKDECNTNRNQSCQD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
978		50		50	1.0
1066	90			10	0.90298
1067		90	10		0.90298
1068			10	90	0.90298
1135	75			25	0.996473
1243	25	75			0.996473
1244	25			75	0.996473
1245		25	75		0.996473
1246	50	25			0.995533
1249	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain