SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2925

Length: 1490 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2925

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana] dbj\|BAC43684.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63396.1\| At5g13570 [Arabidopsis thaliana] gb\|AED91912.1\| mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	mRNA decapping protein 2	-	-	2.643e-09	-

Source	Gene names
Sma3	At5g13570; At5g13570/MSH12_3; GSVIVT00018190001; MICPUCDRAFT_58471; MICPUN_91523; OJ1111_C07.4; OJ1548_F12.26; OSJNBa0049O12.13; Os02g0805900; OsI_09350; OsJ_08785; PHYPADRAFT_124756; PHYPADRAFT_126386; PHYPADRAFT_152241; POPTRDRAFT_563741; POPTRDRAFT_833

Source	GOs	Term	Type	Identity
Sma3	cytoplasmic mRNA processing body	GO:0000932	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	mRNA decapping protein 2, Box A	IPR007722	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13570.2	-	54%
RefSeq	Arabidopsis thaliana	NP_196861.2	mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002311091.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPH2

Fln msg: your sequence is longer than subject: 338 - 210

Fln protein: MSGLHRSVSVPSRNALPPRELLDDLCSRFVLNCPKEDLQSFERILFLIEQAHWFYEDNAMEQNPSLKSLSLREFTSLMFQSCAALRPYIAHIDDIYKDFTSYKVRVPVTGAIILDESYERCLLVKGWKSGASWSFPRGKKAKDEEDHKCAIREVFEETGFDVSKLLNVDDNIEVIIGQQRVRLYIIGGVKDDTVFAPQTKKEISEIAWHRLDELQPTNNEANSRGPNGMKCFMVGPFIGPLKEWIAAHCLPATLKSDGSLKGPSLCVWKAKTSSTGSGPAPGIGSLTDTHVSNVPVMEPYQSATGVINEDLPGKSFRNFRFDSSFILRLLDGMPISG*

Protein Length: 339

Fln nts: TCCAGATTCCTCGTTGTGCTGTATTCGCTTAAACGTCAATGCGTGCCTATAAATATCATTCACATCGATACTCGTTTAAAATTTTGCTTTAAAATTTCTCTTTTTTCTGTTTGCTGGTGCTGTAAATAGCGTTGCCTTCGCGTTTAGGGTTTCTTACAGTTCGCTTCCACTGCCATTTCGACGAAATATTTTTTTCCTCGAAAGAA_-_ATGTCAGGGCTTCATAGATCCGTCAGTGTACCTTCTCGAAATGCCCTTCCCCCCAGGGAACTTCTGGACGACTTGTGCAGTCGATTTGTTTTGAATTGTCCTAAAGAAGATCTTCAGTCCTTCGAAAGGATTTTGTTCCTTATAGAGCAAGCGCACTGGTTTTATGAAGACAATGCAATGGAGCAAAATCCATCTCTGAAGTCTCTAAGTCTAAGGGAATTCACATCTTTAATGTTTCAGAGTTGTGCAGCATTAAGACCTTATATTGCACATATAGATGACATTTATAAAGATTTCACTTCCTACAAAGTTCGTGTGCCAGTAACTGGTGCAATAATTTTGGACGAGTCTTATGAGAGGTGCCTGCTTGTGAAAGGTTGGAAGTCAGGGGCAAGTTGGAGTTTCCCTCGTGGAAAGAAAGCCAAGGATGAAGAAGACCACAAGTGTGCCATCAGAGAAGTATTTGAAGAAACAGGATTTGATGTATCTAAGCTTTTGAATGTTGATGACAACATAGAAGTTATTATAGGACAGCAAAGAGTGCGCCTGTACATCATTGGTGGAGTGAAGGATGACACAGTGTTTGCACCACAAACTAAAAAGGAGATTAGTGAAATTGCTTGGCATCGATTGGATGAATTGCAACCTACAAACAATGAGGCCAATTCTCGTGGACCGAATGGAATGAAGTGTTTTATGGTTGGACCATTTATTGGGCCACTAAAGGAATGGATAGCAGCGCATTGCCTACCAGCAACATTAAAGAGCGATGGTTCACTAAAAGGGCCTAGTCTTTGTGTTTGGAAGGCTAAAACGAGTTCTACAGGGAGTGGGCCAGCTCCGGGAATTGGTTCTCTGACCGATACACATGTTTCTAATGTGCCTGTGATGGAGCCTTATCAAAGCGCAACTGGCGTTATAAATGAAGACTTACCTGGCAAAAGCTTCCGAAATTTCAGATTCGATTCGTCTTTCATTCTGCGACTGCTCGATGGGATGCCCATTTCCGGGTAA___CAATTTAACACTAGTTATTTATTGGGTTCAAGCGTGCAGTCTTACCTTGTAAATGTTGTCTGATATTTTGTGTACAGAGCATTGTGATGTTGAATTATATGACTCGATCTGATGGGTATCCCGTTCTTGGATCATTTCATGCAGTGGGACATAATATTCTCTGTGCTGTAGCTTTGGTCTTTTATTTTTCAATCGTTTTCTTAGTACGAGCAAACCGCTCTCATCTTCCAAGCCACTTGCAATTGATGGTGATGTCAGCAAACATGAATT

Fln Alignment:

Contig2925___MSGLHRSVSVPSRNALPPRELLDDLCSRFVLNCPKEDLQSFERILFLIEQAHWFYEDNAMEQNPSLKSLSLREFTSLMFQSCAALRPYIAHIDDIYKDFTSYKVRVPVTGAIILDESYERCLLVKGWKSGASWSFPRGKKAKDEEDHKCAIREVFEETGFDVSKLLNVDDNIEVIIGQQRVRLYIIGGVKDDTVFAPQTKKEISEI
A9NPH2______________MSGIHRSVSVPSRNALPPRELLDDLCSRFVLNCPKEDLQSFERILFLIEQAHWFYEDNAMEQNPSLKSLSLREFTSLMFQSCAALRPYIAHIDDIYKDFTSYKVRVPVTGAIILDESYERCLLVKGWKAGSSWSFPRGKKAKDEEDHKCAIREVFEETGFDVSKLLNVDENIEVVIGQQRVRLYIIGGVKEDTVFHHKLKRRLVKL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1022		50	50		1.0
1121		70		29	1.0
1218			15	84	0.999986
1219	84		15		0.999986
1224	16			83	0.999991
1226	16			83	0.999991
1227	83			16	0.999991
1228	83			16	0.999991
1230	83			16	0.999991
1233		50	16		1.0
1235	83		16		0.999991
1236		16	83		0.999991
1240			16	83	0.999991
1266	66		33		1.0
1267		44	55		1.0
1299			62	37	1.0
1322		14		42	1.0
1328			42	57	1.0
1396			20	80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain