SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2877

Length: 2648 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2877
TGGAGGAGTTGTTGGAGTGGGGGATGCCATCATTTAGGGCAGATGGCAAAAGTATAGTTGGTAGTTACATATCATAAGGAGGGGCTCTGCTCTGATTTGCATGGGTTCAGCATTTCAATACCCTCTGCAAGCTCAGGACAAGTGGTGTCATTTTTGTTGGAAGGCCTAAAAAGGACACCAAGAATACTGGTCTGTATGCAATTTTTGAATAGAGATCCAAAATGGGTTTTGAAGTTCGTTATAGCTGCTGAGCTTTGCAACCACAGCTACCATCAATGAGCAAGATGTTGGACAGAAACACCGAGACTCGTCCTCCGCTTCTCAATCTCAAGCTTGTGCAGTCTAGCAGCATACCAGCTCAAGCGAACAACAAGAGGCCGTATGTGAGAAGTGAATATCAATCTGAACCAACGTCAGTTCTGGACATTCGCAGCCCCAGCCCCACCTCGACTCTATCTGTTTCATTTGGGGGTTCAACAGATGGTGGCTTTTTTCGTGAGAATGCGTGTGATGGGCAACTACTGGATTGCATTGGTGTAATGGACTCAAAAGATGGAGGTAACTGGCAATTACAGAATGTGATTAGAAATGAGAATGAATTTCAGGTTGCTGAAACTGAGGCTGTCAATGTAAATCCCAATGTGTCAATGGGGATGGAATATCTGGAGAACATATTGTTGCAGTCCCCAGAGGCCAACAACAACTCCCAGATTCCTTGTTTAATGGGAGAGCCGTGTTTAATGGGGAATGAATATCCCTTGCAGGGAATCAAAGCTGAGGAGGCTGTCCTTCAACAGACACACTTTAACGAGGCCACTGATTCCCAGCTCTCTGAGTTTTTCTGTGGCAATTCAGATATTGGCCCATATAGCTTCTTTGGCGACAATGCTGGGCACACTATTTCTCCCTTTGCATTGAACCCTACTTCCACTGCTCTGTTTCCGCCGAGTAATGCGCTAATCACACCTAATATCCATGGTCCAAACCCTCCTCCCCTCTCGTTCACTCCGGATTTCAAAACTTTCAAGGTTCCTCTGGATGAAAAGCATCCAGAGTTGCAGCTTCCATATGGTCCCAACCCAAGTTATCCTGAGAAAAATGCTATTTTTCCTATGCCTGCAGCCCCTCGAGGTCATATGGGTGTTGCTCACGAGGGTTTTCCAGAGTTTGAAAAATCATTGCACTGGCAGCAGATACAGCAGCGAGAGTTTCAACCTGCATGGAAAACAATGATTAATAGAAGTGTCAGGGATCCATTATTTTCCCCAGTGAAGCAAGAATGGTCTGGGCGGACTCACCAAGGCAGGGTAGACTTGGATGAAGTTCAGAAATCAGCGATACTTCAACAGCTTCTTAACGCTACAAACTATGTGGAACTAGGCAGCTTAGACATTGTACAGGCGATATTGGCGCGGCTCAATCAGTATGTTTCACCCCGTGGGAAGGCCCTCCAGAGGGCCACATATTACTTCAAAGAGGCACTTGGTGGCCTTCGATCACTGCCACAAACTAACTCAAAGTCATACCTTTCTCCTCTCCAATTGGTTCACAAGATTAATGCATGTAAGAACTTTTCTGAAATCTCTCCTATCCCTTACTTCGCAAATTTTACTGCCAATCAAGTTCTTCTGGAGGCTTTGGAAGCCGTGGACAAAATTCATATTATTGACTTTGATATGGGCCTTGGAGGACAATGGGCTTCTTTCTTACAAGAGATTGCATTAAGGCCAGGAGGGCCTCCAGCACTCAGGCTGACAGCAGTAGGATATGAATCAATGGAAATGCATTTGATAAGAGAGAATCTGTGTACTTTTGCAGAAAACTTGAATATACCTTTCACATTTCAGGTGGTTGAAATCCCACAGAATGAAGATTTGAATCGTTCAATGTTAAACCTGAAAGAAGGAGAAACCATAGCAGTGAATTATTCTCTTGGAATGCAAGGATTACTCTCGAAGGACTCAATAGCTTCTATTTTGCACCTTATTAATCGACTCCGCCCTAAGATAGTTGTGGTAGTCGACCATGAGAATGAGCAAGCTGGAAGCTCATTTGCACAGAAGTTCATGGAGGCTCTTCAGTTTTATGCCCTTCTATTTGAATCCCTTGAGGCTGTACACATGAATATGGAGACAATTGAGATGATAGAAAAGTTTGTCATGGCACCTAGAATTTGTAATGTGGTAGAAGCGGCCTATAGAAGGCATAGGGAAGGAGAAAATCTCCCTAATTGGAGAAGTATGTTCCAGGCTGCAGGTTTCACTCCAATGATGATGAGCAACTTCACACACAAGCAGGCGGAATCCCTTAGTAGGAGTAGGCAGCAACGCTTTGGGTTTTGTTTTGAAGCAGTGAAGAAGCAGCAGGAACAAATTCTCCTCCTCGGTTGGCAGCGACAAATTCTTGTCTCAGTCTCTGCTTGGATTGTTAATAATGTTGTTTAATCATGTATTAACTAAGTAAGTTTTCAGAGTCGTTGACTCATGCTTCGGCTTCTAACAGTGTTGATCTAATCTAGAAGCTTGAAATCATCTAGAAGCTTGAATTCACCTGTAGGCTGTTACTATGATTTGAAGGCAAATATTAATCCAAACTAATGTTTTGTGGCAATCTCATGTTCATGAAAGTTTGCTTTTTATTTTAAATAT

Ace file of the UniGene sp_v3.0_unigene2877 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03514, GRAS, GRAS family transcription factor	-	-	0.0	37%
FL-Next	sp=Scarecrow-like protein 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Sma3	GRAS family transcription factor	-	-	3.22e-07	-

Source	Gene names
Sma3	GRAS58; GRAS61; GSVIVT00024982001; PHYPADRAFT_143602; POPTRDRAFT_409708; POPTRDRAFT_592659; RCOM_1062060;

Source	GOs	Term	Type	e value	Identity
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O81316

Fln msg: your sequence is longer than subject: 723 - 558

Fln protein: MSKMLDRNTETRPPLLNLKLVQSSSIPAQANNKRPYVRSEYQSEPTSVLDIRSPSPTSTLSVSFGGSTDGGFFRENACDGQLLDCIGVMDSKDGGNWQLQNVIRNENEFQVAETEAVNVNPNVSMGMEYLENILLQSPEANNNSQIPCLMGEPCLMGNEYPLQGIKAEEAVLQQTHFNEATDSQLSEFFCGNSDIGPYSFFGDNAGHTISPFALNPTSTALFPPSNALITPNIHGPNPPPLSFTPDFKTFKVPLDEKHPELQLPYGPNPSYPEKNAIFPMPAAPRGHMGVAHEGFPEFEKSLHWQQIQQREFQPAWKTMINRSVRDPLFSPVKQEWSGRTHQGRVDLDEVQKSAILQQLLNATNYVELGSLDIVQAILARLNQYVSPRGKALQRATYYFKEALGGLRSLPQTNSKSYLSPLQLVHKINACKNFSEISPIPYFANFTANQVLLEALEAVDKIHIIDFDMGLGGQWASFLQEIALRPGGPPALRLTAVGYESMEMHLIRENLCTFAENLNIPFTFQVVEIPQNEDLNRSMLNLKEGETIAVNYSLGMQGLLSKDSIASILHLINRLRPKIVVVVDHENEQAGSSFAQKFMEALQFYALLFESLEAVHMNMETIEMIEKFVMAPRICNVVEAAYRRHREGENLPNWRSMFQAAGFTPMMMSNFTHKQAESLSRSRQQRFGFCFEAVKKQQEQILLLGWQRQILVSVSAWIVNNVV*

Protein Length: 724

Fln nts: TGGAGGAGTTGTTGGAGTGGGGGATGCCATCATTTAGGGCAGATGGCAAAAGTATAGTTGGTAGTTACATATCATAAGGAGGGGCTCTGCTCTGATTTGCATGGGTTCAGCATTTCAATACCCTCTGCAAGCTCAGGACAAGTGGTGTCATTTTTGTTGGAAGGCCTAAAAAGGACACCAAGAATACTGGTCTGTATGCAATTTTTGAATAGAGATCCAAAATGGGTTTTGAAGTTCGTTATAGCTGCTGAGCTTTGCAACCACAGCTACCATCA_-_ATGAGCAAGATGTTGGACAGAAACACCGAGACTCGTCCTCCGCTTCTCAATCTCAAGCTTGTGCAGTCTAGCAGCATACCAGCTCAAGCGAACAACAAGAGGCCGTATGTGAGAAGTGAATATCAATCTGAACCAACGTCAGTTCTGGACATTCGCAGCCCCAGCCCCACCTCGACTCTATCTGTTTCATTTGGGGGTTCAACAGATGGTGGCTTTTTTCGTGAGAATGCGTGTGATGGGCAACTACTGGATTGCATTGGTGTAATGGACTCAAAAGATGGAGGTAACTGGCAATTACAGAATGTGATTAGAAATGAGAATGAATTTCAGGTTGCTGAAACTGAGGCTGTCAATGTAAATCCCAATGTGTCAATGGGGATGGAATATCTGGAGAACATATTGTTGCAGTCCCCAGAGGCCAACAACAACTCCCAGATTCCTTGTTTAATGGGAGAGCCGTGTTTAATGGGGAATGAATATCCCTTGCAGGGAATCAAAGCTGAGGAGGCTGTCCTTCAACAGACACACTTTAACGAGGCCACTGATTCCCAGCTCTCTGAGTTTTTCTGTGGCAATTCAGATATTGGCCCATATAGCTTCTTTGGCGACAATGCTGGGCACACTATTTCTCCCTTTGCATTGAACCCTACTTCCACTGCTCTGTTTCCGCCGAGTAATGCGCTAATCACACCTAATATCCATGGTCCAAACCCTCCTCCCCTCTCGTTCACTCCGGATTTCAAAACTTTCAAGGTTCCTCTGGATGAAAAGCATCCAGAGTTGCAGCTTCCATATGGTCCCAACCCAAGTTATCCTGAGAAAAATGCTATTTTTCCTATGCCTGCAGCCCCTCGAGGTCATATGGGTGTTGCTCACGAGGGTTTTCCAGAGTTTGAAAAATCATTGCACTGGCAGCAGATACAGCAGCGAGAGTTTCAACCTGCATGGAAAACAATGATTAATAGAAGTGTCAGGGATCCATTATTTTCCCCAGTGAAGCAAGAATGGTCTGGGCGGACTCACCAAGGCAGGGTAGACTTGGATGAAGTTCAGAAATCAGCGATACTTCAACAGCTTCTTAACGCTACAAACTATGTGGAACTAGGCAGCTTAGACATTGTACAGGCGATATTGGCGCGGCTCAATCAGTATGTTTCACCCCGTGGGAAGGCCCTCCAGAGGGCCACATATTACTTCAAAGAGGCACTTGGTGGCCTTCGATCACTGCCACAAACTAACTCAAAGTCATACCTTTCTCCTCTCCAATTGGTTCACAAGATTAATGCATGTAAGAACTTTTCTGAAATCTCTCCTATCCCTTACTTCGCAAATTTTACTGCCAATCAAGTTCTTCTGGAGGCTTTGGAAGCCGTGGACAAAATTCATATTATTGACTTTGATATGGGCCTTGGAGGACAATGGGCTTCTTTCTTACAAGAGATTGCATTAAGGCCAGGAGGGCCTCCAGCACTCAGGCTGACAGCAGTAGGATATGAATCAATGGAAATGCATTTGATAAGAGAGAATCTGTGTACTTTTGCAGAAAACTTGAATATACCTTTCACATTTCAGGTGGTTGAAATCCCACAGAATGAAGATTTGAATCGTTCAATGTTAAACCTGAAAGAAGGAGAAACCATAGCAGTGAATTATTCTCTTGGAATGCAAGGATTACTCTCGAAGGACTCAATAGCTTCTATTTTGCACCTTATTAATCGACTCCGCCCTAAGATAGTTGTGGTAGTCGACCATGAGAATGAGCAAGCTGGAAGCTCATTTGCACAGAAGTTCATGGAGGCTCTTCAGTTTTATGCCCTTCTATTTGAATCCCTTGAGGCTGTACACATGAATATGGAGACAATTGAGATGATAGAAAAGTTTGTCATGGCACCTAGAATTTGTAATGTGGTAGAAGCGGCCTATAGAAGGCATAGGGAAGGAGAAAATCTCCCTAATTGGAGAAGTATGTTCCAGGCTGCAGGTTTCACTCCAATGATGATGAGCAACTTCACACACAAGCAGGCGGAATCCCTTAGTAGGAGTAGGCAGCAACGCTTTGGGTTTTGTTTTGAAGCAGTGAAGAAGCAGCAGGAACAAATTCTCCTCCTCGGTTGGCAGCGACAAATTCTTGTCTCAGTCTCTGCTTGGATTGTTAATAATGTTGTTTAA___TCATGTATTAACTAAGTAAGTTTTCAGAGTCGTTGACTCATGCTTCGGCTTCTAACAGTGTTGATCTAATCTAGAAGCTTGAAATCATCTAGAAGCTTGAATTCACCTGTAGGCTGTTACTATGATTTGAAGGCAAATATTAATCCAAACTAATGTTTTGTGGCAATCTCATGTTCATGAAAGTTTGCTTTTTATTTTAAATAT

Fln Alignment:

Contig2877___ILQQLLNATNYVELGSLDIVQAILARLNQYVS-PRGKALQRATYYFKEALGGLRSLPQTNSKSYLSPLQLVHKINACKNFSEISPIPYFANFTANQVLLEALEAVDKIHIIDFDMGLGGQWASFLQEIALRPGGPP-ALRLTA----VGYESMEMHLIRENLCTFAENLNIPFTFQVVEIPQNEDLNRSMLNLKEGETIAVNYSLGMQGLLSKDSIASILHLINRLRPKIVVVVDHENEQAGSSFAQKFMEALQFYALLFESLEAVHMNMETIEMIEKFVMAPRICNVVEAAYRRHREGEN-LPNWRSMFQAAGFTPMMMSNFTHKQAESLSRSRQQRFGFCFEAVKKQQEQILLLGWQRQILVSVSAW
O81316______________ITEQLVKAAEVIESDTC-LAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLH----NVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLGSI--SWPNSSEKEAVAVNISAA-----SFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLV---LDRSRPIERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVR-GFHVE----KKHNSLLLCWQRTELVGVSAW

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
44	75			25	0.996473
300		88		11	0.923564
767		90	10		0.90298
793		16		83	0.994512
893	10		90		0.90298
986	85		14		0.993533
2291	81		18		0.999994
2359		88		11	0.923564
2413	14		85		0.993533
2414	85	14			0.993533
2416		85		14	0.993533
2445	85			14	0.993533
2446	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain