SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2851

Length: 3242 nt

UniGene Fasta

>sp_v3.0_unigene2851
ACGATCGCCGGGCGTCTGGACACCGTCACAATTCAGCACCGATTGATCCAGAAATCCCAGAGATCGTCATTATACATCGAGGATTTCTGAGGGGAATTCGGTCGATGCCTTCGAATTTCAAGGGTTTGAATTGAACAGGGGAGTTTCACGACCCCAAAATGTGGGTGTTTTATCTGATATCGTTGCCACTGACGTTGGGCATGGTGGCTGCCACGCTCAAGTATTTCGCTGGCCCGGAGGTTCCTCGATACGTTCTGTTCACCGTTGGCTATGCGTGGTTCTGTTCCTTATCCATAATTATACTCGTGCCGGCCGATATCTGGACCACCATCACTGGCCAAGATAAAGGAGGAATCGCTTTCTTTTGGAGTTGGTCTTACTGGAGCACTTTTCTTCTTACCTGGGCCATTGTTCCTACTATCCAGGGCTATGAAGATGCTACAGATTTTACAGTTACAGAGCGGTTAAAAACAAGTATTCAGGGAAATCTGGTGTTCTACTTAAGTGTGGGGTCTATTGCTATGTTTGGAGTTGTCATTCTCATTCTCATGCACAAAAGTTGGGGTGGTGGGATAATTGGCCTGGCAATGGCATGCTCGAATACTTTCGGTCTTGTTACAGGTGCTTTTCTTCTGGGATTTGGTTTAATTGAAATTCCTAGAAGCATTTGGAGGAATGCGAATTGGAACTATCGACAGAAAATTCTGTCCCATCGAGTTGCAAAGATAGCTGTTAAACTTGATGATGCTCATCAAGAACTCTCAAATGCATTTGTGATTGCCCAGGCTACTTCAAATCAGATGTCCAAGCGAGATCCATTACGACCTTACATGGATGTGATTGATAATATGCTGCTCCAGATGACCAGAGAAGATCCGAACTTCAAACCATCAGGAGGAAGATTGGGGGAAGATGACATGGATTATGACACTGATGAAAAATCAATGGCTGCCCTTAGGTATCAACTAAGAAGAGCTGCAGAGGAATATTACCGTTACAAAAGTGAGTACATAAGCAATGTGTGTGAGGCGCTTGAGCTGGAGGATACAATTAAGAACTATGAACATGGTAGCACTACAGAATGGCGTTACATATCAAGTTTCCGTCGGCCTCGCATTGGTACTTTTGGGCAGTACTTGGATATGATGGAGTGGGTCTGGCGGTGTGTTCTTAGGCAGCAGCTTGAGAAAGTCTTGGCAATTGTTCTGGGGTCAATGTCAGCTGCTATTTTATTGGCAGAGGCCACACTATTGCCAAGCGGGGTTGATCTTTCTCTATTCTCTATCCTCATTAAAGCTGTTGGTGAACAAGAGATGCTAGTGCAGGTTACAGCATTTGTTCCTCTAATGTACATGTGCATCTGCACATATTTTTCTCTTTTCAAGCTTGGGATGTTCACTTTCTATTCCTTGACACCAAAGCAGACAAATGCTGTTAGCCTTCTCATGATATGCTCAATGGTTGCTCGTTATGCTCCTCCAATATCATACAATTTCTTGAACTTGATCCGTCTTGATGGAAATGCGAAAACTACATTTGAAAAGAGGATGGGTAACATTGATGATGCTGTCCCCTTTTTTGGACAAGGATTTAATAGGATATATCCTCTTTTCATGGTGATCTATACAATTTTGATAGCAAGCAATTTTTTTGATCGTGTCATTGACTTTTTTGGGAGCTGGTGGAAATTCAGATTTGAAAATGAGGCTGAGGATGCTGATGGGTTTGATCAATCCGGCACAATTATTCTTAAAAAAGAGCGTCAATGGCTGGAACAAGGACATGTGGTTGGAGAAAATGTTGTTCCATTGGCCCGAAACTTCAACAATTGGAGTGAAGACATTGAGGCTGACAATATCCCCAAGAAATCAACATGGAGTGTTGATGATGTTCGGAATAAGACTCAGATGGAAATGAAAACATCAACAGCTAGTCTGATCACAACGAAACAAGATGGCAAAGGTAGTCAGTCAAAGATCCTGAAAGAGGATCACCAAGTATATGGCAGCAAGGGTGCTATTGCAGCTAAGTACGCTCCTCTGAGGGAACATCAGAACAAGCTTTCGTATCCTCCATCAGGATCGATGCAACCTCACAAATCAGATGTAAGACCTGCTGTCCAGGTTGGCAACTCTGGAAATTCGACAGATAACAGAAAACAGCTAGATATTCCTTTTGGTTTAGCTACAAAGTGGGAATCAATGAAGTCAAGTCTACAGGGTATAAAGGCCAGTCTAGGAGCCAAAGGATTTGTACCATTACGACAAACTCTGGAAAGAGAGCAGTCCAGGTCACAGATTTCTGCAACTGAATCTTTAGATAGCATATTTGAGAAACTCAAGCAAAGAAAAGATGATCATGGAGATGGTGACAGTTCAGATTATAGGTTTCCAAGATCTGCCAGATAATGTATCTCATTCTTTCCAAGTCAGCAGAATATTATGCAGTCTGCCTGCTTGTCAACCATTATTTTTCTCTCCTCTGAAGCATGTAACAAATTGACGATTTCTCAATTCACTACACAAATGGCCAAGATTACTGAAACAGATTTTTGCATGGTATGGCTGAAGCTGTAGTGCCTGTAATGTTTGGTGGATTCACTATTTGTGATTGTTGGGAGCAGGGTAGGCATTTGTTAGTGTGCAGTACTTCAGGCATTGATCTCAAATTCTATCATGCACACAGAATATTATCAGTTGTTTCATCTGATATTATTATGGAACATACTCTGCTAACATGAACAGTCATCGACATAAAATTCTCCGAGGAAGAAGATATTCCTCTGAACGTAAAGAGATTTCATATGAAAATATGACTTTGGCCTCCAGTCATACCTTCTACACTATAACGTCACATAAACGTCTCCATTGTATTTGTTAATTGGCCTTGCCTGTGATGATCTTGTTGACCTGGAGGAATCTATATTTTATGTAGCGTCTGGGGTGGAGTTTGATCGCTAAAATAACTTTTCACATTTTATTGTATCAAAAAAGACTTGTATCTACTAAAATTAGTGACATTCTTAAGCACATACGTCAGTGTTTGAGCAGAACAAGGCAAGAACCCTGTTTACCATAGTAATTGTAACGTTTTGCTTTTATGAAACTTGAAAGCCTATTAGTGATCAAATTTGAAGAGTGTTTATTCTACTCTGAAGGGCTTTGCACTACAAGTCCTTGAAATATTGAAAGGTTTGTTGAAATTTAGCACTTTAAGTAAAACAATGTTATTTTGTCATTTTA

Ace file of the UniGene sp_v3.0_unigene2851

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LMBR1 integral membrane protein-like n=3 Tax=Oryza sativa RepID=Q6Z7V1_ORYSJ	-	-	0.0	64%
FL-Next	tr=Uncharacterized protein; Oryza glaberrima (African rice).	-	-	0.0	64%

Source	Gene names
Sma3	At5g65290; GSVIVT00012165001; GSVIVT00012166001; GSVIVT00013068001; Os02g0758100; Os06g0218900; OsI_09008; OsI_22181; OsJ_08455; OsJ_20612; P0436F11.10; P0471A11.34; P0644A02.34; PHYPADRAFT_114843; PHYPADRAFT_60264; POPTRDRAFT_558496; POPTRDRAFT_562557; R

Source	InterPros	Term	Type	e value	Identity
Sma3	LMBR1-like membrane protein	IPR006876	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65290.1	LMBR1-like membrane protein chr5:26089814-26094337 FORWARD LENGTH=733	60%
RefSeq	Arabidopsis thaliana	NP_201332.1	LMBR1-like membrane protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002307069.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1P4G5

Fln msg:

Fln protein: MWVFYLISLPLTLGMVAATLKYFAGPEVPRYVLFTVGYAWFCSLSIIILVPADIWTTITGQDKGGIAFFWSWSYWSTFLLTWAIVPTIQGYEDATDFTVTERLKTSIQGNLVFYLSVGSIAMFGVVILILMHKSWGGGIIGLAMACSNTFGLVTGAFLLGFGLIEIPRSIWRNANWNYRQKILSHRVAKIAVKLDDAHQELSNAFVIAQATSNQMSKRDPLRPYMDVIDNMLLQMTREDPNFKPSGGRLGEDDMDYDTDEKSMAALRYQLRRAAEEYYRYKSEYISNVCEALELEDTIKNYEHGSTTEWRYISSFRRPRIGTFGQYLDMMEWVWRCVLRQQLEKVLAIVLGSMSAAILLAEATLLPSGVDLSLFSILIKAVGEQEMLVQVTAFVPLMYMCICTYFSLFKLGMFTFYSLTPKQTNAVSLLMICSMVARYAPPISYNFLNLIRLDGNAKTTFEKRMGNIDDAVPFFGQGFNRIYPLFMVIYTILIASNFFDRVIDFFGSWWKFRFENEAEDADGFDQSGTIILKKERQWLEQGHVVGENVVPLARNFNNWSEDIEADNIPKKSTWSVDDVRNKTQMEMKTSTASLITTKQDGKGSQSKILKEDHQVYGSKGAIAAKYAPLREHQNKLSYPPSGSMQPHKSDVRPAVQVGNSGNSTDNRKQLDIPFGLATKWESMKSSLQGIKASLGAKGFVPLRQTLEREQSRSQISATESLDSIFEKLKQRKDDHGDGDSSDYRFPRSAR*

Protein Length: 751

Fln nts: ACGATCGCCGGGCGTCTGGACACCGTCACAATTCAGCACCGATTGATCCAGAAATCCCAGAGATCGTCATTATACATCGAGGATTTCTGAGGGGAATTCGGTCGATGCCTTCGAATTTCAAGGGTTTGAATTGAACAGGGGAGTTTCACGACCCCAAA_-_ATGTGGGTGTTTTATCTGATATCGTTGCCACTGACGTTGGGCATGGTGGCTGCCACGCTCAAGTATTTCGCTGGCCCGGAGGTTCCTCGATACGTTCTGTTCACCGTTGGCTATGCGTGGTTCTGTTCCTTATCCATAATTATACTCGTGCCGGCCGATATCTGGACCACCATCACTGGCCAAGATAAAGGAGGAATCGCTTTCTTTTGGAGTTGGTCTTACTGGAGCACTTTTCTTCTTACCTGGGCCATTGTTCCTACTATCCAGGGCTATGAAGATGCTACAGATTTTACAGTTACAGAGCGGTTAAAAACAAGTATTCAGGGAAATCTGGTGTTCTACTTAAGTGTGGGGTCTATTGCTATGTTTGGAGTTGTCATTCTCATTCTCATGCACAAAAGTTGGGGTGGTGGGATAATTGGCCTGGCAATGGCATGCTCGAATACTTTCGGTCTTGTTACAGGTGCTTTTCTTCTGGGATTTGGTTTAATTGAAATTCCTAGAAGCATTTGGAGGAATGCGAATTGGAACTATCGACAGAAAATTCTGTCCCATCGAGTTGCAAAGATAGCTGTTAAACTTGATGATGCTCATCAAGAACTCTCAAATGCATTTGTGATTGCCCAGGCTACTTCAAATCAGATGTCCAAGCGAGATCCATTACGACCTTACATGGATGTGATTGATAATATGCTGCTCCAGATGACCAGAGAAGATCCGAACTTCAAACCATCAGGAGGAAGATTGGGGGAAGATGACATGGATTATGACACTGATGAAAAATCAATGGCTGCCCTTAGGTATCAACTAAGAAGAGCTGCAGAGGAATATTACCGTTACAAAAGTGAGTACATAAGCAATGTGTGTGAGGCGCTTGAGCTGGAGGATACAATTAAGAACTATGAACATGGTAGCACTACAGAATGGCGTTACATATCAAGTTTCCGTCGGCCTCGCATTGGTACTTTTGGGCAGTACTTGGATATGATGGAGTGGGTCTGGCGGTGTGTTCTTAGGCAGCAGCTTGAGAAAGTCTTGGCAATTGTTCTGGGGTCAATGTCAGCTGCTATTTTATTGGCAGAGGCCACACTATTGCCAAGCGGGGTTGATCTTTCTCTATTCTCTATCCTCATTAAAGCTGTTGGTGAACAAGAGATGCTAGTGCAGGTTACAGCATTTGTTCCTCTAATGTACATGTGCATCTGCACATATTTTTCTCTTTTCAAGCTTGGGATGTTCACTTTCTATTCCTTGACACCAAAGCAGACAAATGCTGTTAGCCTTCTCATGATATGCTCAATGGTTGCTCGTTATGCTCCTCCAATATCATACAATTTCTTGAACTTGATCCGTCTTGATGGAAATGCGAAAACTACATTTGAAAAGAGGATGGGTAACATTGATGATGCTGTCCCCTTTTTTGGACAAGGATTTAATAGGATATATCCTCTTTTCATGGTGATCTATACAATTTTGATAGCAAGCAATTTTTTTGATCGTGTCATTGACTTTTTTGGGAGCTGGTGGAAATTCAGATTTGAAAATGAGGCTGAGGATGCTGATGGGTTTGATCAATCCGGCACAATTATTCTTAAAAAAGAGCGTCAATGGCTGGAACAAGGACATGTGGTTGGAGAAAATGTTGTTCCATTGGCCCGAAACTTCAACAATTGGAGTGAAGACATTGAGGCTGACAATATCCCCAAGAAATCAACATGGAGTGTTGATGATGTTCGGAATAAGACTCAGATGGAAATGAAAACATCAACAGCTAGTCTGATCACAACGAAACAAGATGGCAAAGGTAGTCAGTCAAAGATCCTGAAAGAGGATCACCAAGTATATGGCAGCAAGGGTGCTATTGCAGCTAAGTACGCTCCTCTGAGGGAACATCAGAACAAGCTTTCGTATCCTCCATCAGGATCGATGCAACCTCACAAATCAGATGTAAGACCTGCTGTCCAGGTTGGCAACTCTGGAAATTCGACAGATAACAGAAAACAGCTAGATATTCCTTTTGGTTTAGCTACAAAGTGGGAATCAATGAAGTCAAGTCTACAGGGTATAAAGGCCAGTCTAGGAGCCAAAGGATTTGTACCATTACGACAAACTCTGGAAAGAGAGCAGTCCAGGTCACAGATTTCTGCAACTGAATCTTTAGATAGCATATTTGAGAAACTCAAGCAAAGAAAAGATGATCATGGAGATGGTGACAGTTCAGATTATAGGTTTCCAAGATCTGCCAGATAA___TGTATCTCATTCTTTCCAAGTCAGCAGAATATTATGCAGTCTGCCTGCTTGTCAACCATTATTTTTCTCTCCTCTGAAGCATGTAACAAATTGACGATTTCTCAATTCACTACACAAATGGCCAAGATTACTGAAACAGATTTTTGCATGGTATGGCTGAAGCTGTAGTGCCTGTAATGTTTGGTGGATTCACTATTTGTGATTGTTGGGAGCAGGGTAGGCATTTGTTAGTGTGCAGTACTTCAGGCATTGATCTCAAATTCTATCATGCACACAGAATATTATCAGTTGTTTCATCTGATATTATTATGGAACATACTCTGCTAACATGAACAGTCATCGACATAAAATTCTCCGAGGAAGAAGATATTCCTCTGAACGTAAAGAGATTTCATATGAAAATATGACTTTGGCCTCCAGTCATACCTTCTACACTATAACGTCACATAAACGTCTCCATTGTATTTGTTAATTGGCCTTGCCTGTGATGATCTTGTTGACCTGGAGGAATCTATATTTTATGTAGCGTCTGGGGTGGAGTTTGATCGCTAAAATAACTTTTCACATTTTATTGTATCAAAAAAGACTTGTATCTACTAAAATTAGTGACATTCTTAAGCACATACGTCAGTGTTTGAGCAGAACAAGGCAAGAACCCTGTTTACCATAGTAATTGTAACGTTTTGCTTTTATGAAACTTGAAAGCCTATTAGTGATCAAATTTGAAGAGTGTTTATTCTACTCTGAAGGGCTTTGCACTACAAGTCCTTGAAATATTGAAAGGTTTGTTGAAATTTAGCACTTTAAGTAAAACAATGTTATTTTGTCATTTTA

Fln Alignment:

Contig2851___MWVFYLISLPLTLGMVAATLKYFAGPEVPRYVLFTVGYAWFCSLSIIILVPADIWTTITGQDKGGIAFFWSWSYWSTFLLTWAIVPTIQGYEDATDFTVTERLKTSIQGNLVFYLSVGSIAMFGVVILILMHKSWGGGIIGLAMACSNTFGLVTGAFLLGFGLIEIPRSIWRNANWNYRQKILSHRVAKIAVKLDDAHQELSNAFVIAQATSNQMSKRDPLRPYMDVIDNMLLQMTREDPNFKPSGGRLGEDDMDYDTDEKSMAALRYQLRRAAEEYYRYKSEYISNVCEALELEDTIKNYEHGSTTEWRYISSFRRPRIGTFGQYLDMMEWVWRCVLRQQLEKVLAIVLGSMSAAILLAEATLLPSGVDLSLFSILIKAVGEQEMLVQVTAFVPLMYMCICTYFSLFKLGMFTFYSLTPKQTNAVSLLMICSMVARYAPPISYNFLNLIRLDGNAKTTFEKRMGNIDDAVPFFGQGFNRIYPLFMVIYTILIASNFFDRVIDFFGSWWKFRFENEAEDADGFDQSGTIILKKERQWLEQGHVVGENVVPLARNFNNWSEDIEADNIPKKSTWSVDDVRNKTQMEMKTSTASLITTKQDGKGSQSKILKEDHQVYGSKGAIAAKYAPLREHQNKLSYPPSGSMQPHKSDVRPA----VQVGNSGNSTDNRKQLDIPFGLATKWESMKSSLQGIKASLGAKGFVPLRQTLEREQSRSQISATESLDSIFEKLKQR----------KDDHGDGDSSDYRFPRSAR
I1P4G5______________MWVFYLISLPLTLGMVTVTLRYFAGPGVPRYVIATVGYAWFCSLSFIILVPADIWTTLTGREKGGIGFFWSWSYWSTFILTWAVVPTIQGYEDAGDFTVKERLKTSIHMNLLFYSIVGAIGLFGLILLLVMHRAWDGGIVGFAMACSNTFGLVTGAFLLGFGLSEIPRNIWKNADWTHRQKVLSHRVAKMAVKLDNAHQEYSNAIVVAQATSNQMSKRDLLRPYMDIIDKMLAQMLREDPSFKPSGGRLGENDMDYDTDDKTMATLRRQLRRAHEEYYRCKSEYMTYVMEALELEDTIKNYERRDANGWKFVSSFRESRPGTLGSLLDTMEFIWRCVLRKQLQKGFAIVLGCMSAAILLAEATLLPSGVDLSLFSILVKSVGKQEVLVQVAAFVPLMYMCICTYYSLFQIGMLMFYSLTPRQTSSVSLLMICSMVARYAPPISYNFLNLIRLGGDAKTTFEKRMGNIDDAVPFFGRGFNRIYPLFMVVYTLLVASNFFGRLINFFGSWKRFKFQREEENMDGFDPSGMIILQKERSWIEQGCKVGEQVIPLARNFNNVNTDVESGKVPLV----------ENTLEMKSGATS---SRADGRVGQSKYA-------NNRETIATKYSAIREQSRQ-------AVKPAKKEISSTSVSLLEEGSSEQRSNTGAPVGSSAGISQTWATMKIGFQNFKANMGSKKFIPLRQD-PGFAPHSNVSSPESLDEIFQKLKRRPADMPVDYLDDDDDNTGD-MDPTFPGSTR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1515	16			83	0.994512
1598		33	66		0.997452
1599	33		66		0.997452
1600	66			33	0.997452
2146		75	25		0.996473
2524		61		38	1.0
2676	45	54			1.0
3008		50		50	1.0
3198	12			87	0.992554
3199		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain