SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2790

Length: 2364 nt

UniGene Fasta

>sp_v3.0_unigene2790
CTCTGGATCCCTTTCTTTCCAATCACTCACCAAGGCTTATGACGCTATAAAAACACTAGGAACTATTGAAATTTGAAACATCGTATAGAGCTTAATTCGAGTGGGTAAAGTGGCTGAGATTCGAATTGTTCGAAGACAAATGGAAGCACGGAGGGGATTTGAGTTAGGTTTCTATTCTGTCATTGTGGTGGGGATATTATTCGCATGTGATGCACAAGTGCAACCAGTGAACCCGGGGAAATGGAAGCTTCTTGTACAGAACGGTGGAGTTTCTGCCATGCACATGGCTGTTACTCGTCTTAACACTGTCGTCATGTTTGACAGAACCGACTTCGGCCCTTCGCAGCTGATGCTCCCCAATGGTCGATGCCGCGACGATGCGCAGGATCAAGCTCTGACTCACGACTGCACGGCTCATTCCATCGAATACAACGTGCGCACCAATGTGGTCAGGGCGCTTGAGATCTTGACCGATACCTGGTGTTCATCCGGTGCGTTTACTGCCAACGGGACTCTGATGCAGACCGGAGGTTGGAACGACGGGGCGAGAAAAATCCGCATCTTCGTCCCCTGCACGGATGGTACTTGCGACTGGAACGAATTGCAGGCGCCCCAGCTCAATGACAACCGATGGTACTCGACGAACCAGATTCTTCCCGATAATCGCGTCATCGTCGTGGGGGGCACTGGCGATTTCACCTACGAATTCATTCCGAAAGCCACCGGGGAAGGAACCTTCAGCCTGCCTTTTCTTGCCCAGACGCGAACCAGCGCGCAAGTGGAGAACAATCTGTACCCGTATGTGCACCTGTCGTCGGACGGGAACCTGTTCATATTCGCGAACCGGGACTCCATACTTCTGGACTACAAGAACAACGTGGTAGTCAAGACGTATCCGACGATACCGGGGAACGGCCCTAGAAACTACCCTTCCACGGGGTCGTCAGTCATGCTTCCCCTCTCCGCCTCCGACGGGTTTCAGAAAGTCGAAGTCCTCGTCTGCGGCGGATGCCCCGACAACGGTTACGCTTCAGCACAAGCAGGTAACTTCATCAACGCCCTTAACGACTGTGGAAGAATGGTAATAACCGACCCCAATCCTGTGTGGACTATGGAGACCATGCCAAGCCCTAGGACCATGGGCGACATGCTGCTCCTCCCCACCGGAGAAGTCATCATCATCAACGGTGCCCAGCAAGGCGTTGCCGGGTGGGACATGGCCACCGCTCCAGTCTTCTCCCCTGCACTCTACCGCCCCACCGCCGCTCTCGGCTCCCGTTTCTTCACTCTCGCAAGCACCACCATTGCCAGAATGTACCATTCCTCCGCGAGTCTGTTGGCCGACGGAAGAGTTCTCGTCGGCGGCTCAAACCCGCACTTCGGCTACGTTTTAACCGGAACGGCCTTCCCGACAGAGCTCCGGCTGGAGAGCTACAGCCCTTATTATTTGGACGCTTCTTTTAACATCATGCGGCCTCGGATAGTTTCCGTTACCGCCCACTCTCCCATCCCCTACGGCGCCACCTTCACAGTGCGCTTCTCCGTGCCTAATCTCATCCCCGCCGGCGTCCAAGTGAACATCTACGCTCCGTCGTTCACCACCCACAGCCATTCCATGAACCAGAGATTGCTCACTCTCGCAACTTCAGCACCCGCTTTCCTTGGCAACGTTTACTCTATGACGGTCACAGCACCTCCGAGTGGCGTGGCTGCACCGCCTGGATACTACATGCTATTTGTTGTCAACAATGGCATTCCCAGCGCGGCCAAATGGCTTCGATTCGGAGCATAATCTTCATTCCAATGAATTTCTCTTCGCTGCATCTCCGAAAACATGTTCAGTTCAAGAACACCCAAATAATCGCTTGCAACTTCAACCTCTGCTCGATCCAACATTATCTATTAAAATTCCTTTCAGTCTGGCATTCATAAATCCGCCATTGATACTCTTCGGCTTGAGCCTGTACTCCTCTGCTTATGCTTTGCTCTCTTTTTAGCTTGCCAGGAATCATAAATCGTCTTTTTCAGTTTGTAGCAATAAGAAGCCTCAAACCAGTGGGAGGCAGAATCCTGCAAGTCGTCCATTATCACAGCATCATGTTCGCCCAAGGACGATCCTGAAGTTGTTATTATATAGTAAGTTAATAAAATTGGGGCAGCCATGGTTAGTGTACATGGGTTAATAAAATTTGCTCAACCATTTCATAAGTTTGTTGATGATTAATTTAATCATCGAACAACCATGCAGAGCAACCCTGCTATTTGATTTTGTAAAATCTTATGCAATACCATTCTGAACTATTAATTCAATTACAGTTTTCTCTAATCATGTAATTTACTGCAAATAATCTTGGCATACTTTTC

Ace file of the UniGene sp_v3.0_unigene2790

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Galactose oxidase, putative n=1 Tax=Ricinus communis RepID=B9R845_RICCO	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	57%
Sma3	Glyoxal oxidase	-	-	2.222e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Galactose oxidase.	EC:1.1.3.9	-	4.797e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		4.797e-19	%

Source	Gene names
Sma3	AT3G53950; At1g19900; At1g67290; At1g75620; At3g53950; At3g53950/F5K20_250; At3g57620; At5g19580; B1144G04.6; F14L17.20; F15B8.190; F5K20_250; F6F9.4; GSVIVT00000516001; GSVIVT00014487001; GSVIVT00015939001; GSVIVT00016700001; GSVIVT00021405001; GSVIVT000

Source	GOs	Term	Type	e value	Identity
Sma3	galactose oxidase activity	GO:0045480	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G75620.1	glyoxal oxidase-related protein chr1:28394951-28396594 REVERSE LENGTH=547	49%
RefSeq	Arabidopsis thaliana	NP_177692.1	glyoxal oxidase-related protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002301997.1	predicted protein, partial [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8RR64

Fln msg:

Fln protein: MEARRGFELGFYSVIVVGILFACDAQVQPVNPGKWKLLVQNGGVSAMHMAVTRLNTVVMFDRTDFGPSQLMLPNGRCRDDAQDQALTHDCTAHSIEYNVRTNVVRALEILTDTWCSSGAFTANGTLMQTGGWNDGARKIRIFVPCTDGTCDWNELQAPQLNDNRWYSTNQILPDNRVIVVGGTGDFTYEFIPKATGEGTFSLPFLAQTRTSAQVENNLYPYVHLSSDGNLFIFANRDSILLDYKNNVVVKTYPTIPGNGPRNYPSTGSSVMLPLSASDGFQKVEVLVCGGCPDNGYASAQAGNFINALNDCGRMVITDPNPVWTMETMPSPRTMGDMLLLPTGEVIIINGAQQGVAGWDMATAPVFSPALYRPTAALGSRFFTLASTTIARMYHSSASLLADGRVLVGGSNPHFGYVLTGTAFPTELRLESYSPYYLDASFNIMRPRIVSVTAHSPIPYGATFTVRFSVPNLIPAGVQVNIYAPSFTTHSHSMNQRLLTLATSAPAFLGNVYSMTVTAPPSGVAAPPGYYMLFVVNNGIPSAAKWLRFGA*

Protein Length: 552

Fln nts: CTCTGGATCCCTTTCTTTCCAATCACTCACCAAGGCTTATGACGCTATAAAAACACTAGGAACTATTGAAATTTGAAACATCGTATAGAGCTTAATTCGAGTGGGTAAAGTGGCTGAGATTCGAATTGTTCGAAGACAA_-_ATGGAAGCACGGAGGGGATTTGAGTTAGGTTTCTATTCTGTCATTGTGGTGGGGATATTATTCGCATGTGATGCACAAGTGCAACCAGTGAACCCGGGGAAATGGAAGCTTCTTGTACAGAACGGTGGAGTTTCTGCCATGCACATGGCTGTTACTCGTCTTAACACTGTCGTCATGTTTGACAGAACCGACTTCGGCCCTTCGCAGCTGATGCTCCCCAATGGTCGATGCCGCGACGATGCGCAGGATCAAGCTCTGACTCACGACTGCACGGCTCATTCCATCGAATACAACGTGCGCACCAATGTGGTCAGGGCGCTTGAGATCTTGACCGATACCTGGTGTTCATCCGGTGCGTTTACTGCCAACGGGACTCTGATGCAGACCGGAGGTTGGAACGACGGGGCGAGAAAAATCCGCATCTTCGTCCCCTGCACGGATGGTACTTGCGACTGGAACGAATTGCAGGCGCCCCAGCTCAATGACAACCGATGGTACTCGACGAACCAGATTCTTCCCGATAATCGCGTCATCGTCGTGGGGGGCACTGGCGATTTCACCTACGAATTCATTCCGAAAGCCACCGGGGAAGGAACCTTCAGCCTGCCTTTTCTTGCCCAGACGCGAACCAGCGCGCAAGTGGAGAACAATCTGTACCCGTATGTGCACCTGTCGTCGGACGGGAACCTGTTCATATTCGCGAACCGGGACTCCATACTTCTGGACTACAAGAACAACGTGGTAGTCAAGACGTATCCGACGATACCGGGGAACGGCCCTAGAAACTACCCTTCCACGGGGTCGTCAGTCATGCTTCCCCTCTCCGCCTCCGACGGGTTTCAGAAAGTCGAAGTCCTCGTCTGCGGCGGATGCCCCGACAACGGTTACGCTTCAGCACAAGCAGGTAACTTCATCAACGCCCTTAACGACTGTGGAAGAATGGTAATAACCGACCCCAATCCTGTGTGGACTATGGAGACCATGCCAAGCCCTAGGACCATGGGCGACATGCTGCTCCTCCCCACCGGAGAAGTCATCATCATCAACGGTGCCCAGCAAGGCGTTGCCGGGTGGGACATGGCCACCGCTCCAGTCTTCTCCCCTGCACTCTACCGCCCCACCGCCGCTCTCGGCTCCCGTTTCTTCACTCTCGCAAGCACCACCATTGCCAGAATGTACCATTCCTCCGCGAGTCTGTTGGCCGACGGAAGAGTTCTCGTCGGCGGCTCAAACCCGCACTTCGGCTACGTTTTAACCGGAACGGCCTTCCCGACAGAGCTCCGGCTGGAGAGCTACAGCCCTTATTATTTGGACGCTTCTTTTAACATCATGCGGCCTCGGATAGTTTCCGTTACCGCCCACTCTCCCATCCCCTACGGCGCCACCTTCACAGTGCGCTTCTCCGTGCCTAATCTCATCCCCGCCGGCGTCCAAGTGAACATCTACGCTCCGTCGTTCACCACCCACAGCCATTCCATGAACCAGAGATTGCTCACTCTCGCAACTTCAGCACCCGCTTTCCTTGGCAACGTTTACTCTATGACGGTCACAGCACCTCCGAGTGGCGTGGCTGCACCGCCTGGATACTACATGCTATTTGTTGTCAACAATGGCATTCCCAGCGCGGCCAAATGGCTTCGATTCGGAGCATAA___TCTTCATTCCAATGAATTTCTCTTCGCTGCATCTCCGAAAACATGTTCAGTTCAAGAACACCCAAATAATCGCTTGCAACTTCAACCTCTGCTCGATCCAACATTATCTATTAAAATTCCTTTCAGTCTGGCATTCATAAATCCGCCATTGATACTCTTCGGCTTGAGCCTGTACTCCTCTGCTTATGCTTTGCTCTCTTTTTAGCTTGCCAGGAATCATAAATCGTCTTTTTCAGTTTGTAGCAATAAGAAGCCTCAAACCAGTGGGAGGCAGAATCCTGCAAGTCGTCCATTATCACAGCATCATGTTCGCCCAAGGACGATCCTGAAGTTGTTATTATATAGTAAGTTAATAAAATTGGGGCAGCCATGGTTAGTGTACATGGGTTAATAAAATTTGCTCAACCATTTCATAAGTTTGTTGATGATTAATTTAATCATCGAACAACCATGCAGAGCAACCCTGCTATTTGATTTTGTAAAATCTTATGCAATACCATTCTGAACTATTAATTCAATTACAGTTTTCTCTAATCATGTAATTTACTGCAAATAATCTTGGCATACTTTTC

Fln Alignment:

Contig2790___GKWKLLVQNGGVSAMHMAVTRLNTVVMFDRTDFGPSQLMLPNGRCRDDAQDQALTHDCTAHSIEYNVRTNVVRALEILTDTWCSSGAFTANGTLMQTGGWNDGARKIRIFVPCTDGTCDWNELQAPQLNDNRWYSTNQILPDNRVIVVGGTGDFTYEFIPKATGEG-TFSLPFLAQTRTSAQVENNLYPYVHLSSDGNLFIFANRDSILLDYKNNVVVKTYPTIPGNGPRNYPSTGSSVMLPLSASDGFQKVEVLVCGGCPDNGYASAQAGNFINALNDCGRMVITDPNPVWTMETMPSPRTMGDMLLLPTGEVIIINGAQQGVAGWDMATAPVFSPALYRPTAALGSRFFTLASTTIARMYHSSASLLADGRVLVGGSNPHFGYVLTGTAFPTELRLESYSPYYLDASFNIMRPRIVSVTAHSPIPYGATFTVRFSVPNLIPAGVQVNIYAPSFTTHSHSMNQRLLTLATSAPAFLGN--VYSMTVTAPPSGVAAPPGYYMLFVVNNGIPSAAKWLR
D8RR64______________GSWELLVENSGVSAMHMLVSHTNKVLIFDRTDYGPSAIRLPHGRCRNDSSDLALKIDCWAHSVELQIPTRNIRPLEVLTDTWCSSGAFRADGTFTQTGGWNDGARVVRHYNFCED--CNWTE-QPGGLQRPRWYASNQILPDNRVIVVGGRVAFSYEFVP---GDGHLYSLPFLRST-SDERSENNLYPFLHLLPDGNLFVFANSESILLDYKNNKVVRSYPSLPG-GARNYPASGSSVMLPLLASQRFQRVEVLICGGASKTAYKQASSGSFETALKTCGRMVVTDNNPSWILEEMPLPRVMGDMVNLPTGEVLIINGAQQGTAGWRFARNPALTPLLYSPSSTSSSKFTTLASASIPRMYHSTAILLPDTRVLVAGSNPNVGYDFSEVLFPTELRIEAFSPPYLDSYFDGVRAEISSM-SKVVIGYNSQITIEFSVSVL--GDMEATLYAPAFATHAYSMNQRLLKLESSSPVLDENSGYYTFVVRAPPTKTIAPPGYYMLFIVNSGVPSTGKWIQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2273			11	88	0.923564
2278	88		11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1173	1184	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain