SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2756

Length: 3566 nt

UniGene Fasta

>sp_v3.0_unigene2756
ATTACGAGGAGGATAGGGAAGTGGCGGGGGACGGTTGTCCCGGGTTCAAAACGCGGGGCATTGGACACGGAAACGAGCGGGTTATTAAGAAGCTGTTTCAGGGGTGATGAATTGTGGAGGTTTCGAACTCGAGATCTGCCTTCACAGGACTTGTGGGGGATGAGAGGAATAATAATTAATTGAAGGCAGGCAGGGGATGCAATAAATGCAGTGGAGTGAATATTGTCGTGCACAGTCCTCTCAGAGGGAATTAGATAAGCCATAAGATAAATCGCGCTACTGCTACTACATTAATGCTAGAAAAGTCTTCCATGATTTCCTCAGGGATTTTTGACCAACAGCGGCGCGAGTACGAATCCTTGTGCGAGCGAGCGATCGTTGATCATTGAACACGTACATCCTGGATGTGCAGTGAGATTTAAAGTGGGGATTTTCGAGATTAGCTTGCTCCAGCTGGTATATTTACTCAGTCTGATTCCATCCTGCGACACTGTATTGGACAGGCGAACAAGATCAGATGGCACGGCCTCGCGGGCGATTATCAGAGAGCAGCAGTAGCAGCCGCAGCATCGGTAACGATGAAGAAGCCGCGTCGTTTTTAGATTCTTCGATGAGGTCGCATGTTCGAAGTCATTCGAGATCCATTTCGTGGTCACATTCGCTCAAGCTGTGGCTGAAGCAAGTCAATTTGGTGGATCTGAGCTCAAACCAGTCCTCCAGTCCTCTGCCCTACAAAAAGATCCCCAACAAGTCCTCTGAAAACGGTGGGGCAATGAAGGATCTAGTGGAGCAAATCAATATTCGACCAAGTTCTTCGAAATGTGGCCCTCTATCGATTCTCAAGTGGGTTTTTCTGTTCTTCATCAGTGTTCTCATGTTGATTGCTGCTCTGGGTTCCAGCTTCCAATCGTCAGCACCTTCGCCCAGTGTTTACAGAGGTTACAGGCGACTGAGAGAGCAAGTCATGGCGGAGTTCTCGGATATAGGGCTGTTTTCTCTCCGGGCCAAGGAGCAGCTGGGTCTCTGTGGCAAGGGCGTGGAGGACTTCATTCCCTGCTATAATGTGTCTCAGAATCGAATTCTTGGGTATGCGAATGGAGATGAATACGATCGGCATTGTGGGTTTTCGAGATCAATGCGGCGGCCTTGCTTGGTGCGCCCTCCCAAGGACTACAAGATTCCACTCAGGTGGCCTACTGGCAGGGATGTCATATGGAGCGGCAATGTGAAGATCACCAAAGAACAGCTGCTTTCCTCTGGAAGTCTTACAAAAAGGTTGATGTTGCTGGAGGACAATCAAATATCTTTTCGCTCTGAAGATGCACTCGTGGTTGATGGCGTCGAAGATTATTCACATCAAATTGCAGAGATGATTGGGTTGCGCAATGAATCAGAATTCATTCAAGCTGGTGTTCACACAGTATTGGATATTGGCTGCGGTTTTGGTAGTTTTGGGGCTCATCTCTTCTCCAAAAAGTTGTTAACCATGTGCATAGCTGGATATGAGTTATATGGAAGTCAAGTTCAATTAGCTCTTGAGAGGGGTCTTCCTGCAATGCTTGGATCTTTTATTTCTAGACAACTGCCCTATCCTCCACTGTCTTTTGATATGGTTCACTGTGCAAGGTGCGGCATTGATTGGGAGCAGAAAGATGGTGCTTTCTTGATTGAAGTTGATCGGGTTCTTAAACCTGGTGGATACTTTGTTTGGACATCACCACTGACAAACTTACATGGAGCTACACTGAACAATGCAAACCGGAACAAGTGGAAATTTATTCAGGAGTTCACCCAGAAGCTCTGCTGGATTCTGTTGTCACAACAAGAAGAAACAGTTGTTTGGCAGAAGACGAGCAGTAAAGACTGTTATGCTTCTCGCAATCTTGGAGGACCACCCCCTGTCTGCAATAAAGGGCAAGATGTAGAGTCTCCTTATTATCAGCCACTTCTCTCATGCATTGGAGGAACTCATAGTCACAGATGGATCCCCATTTTGAATCAAACAAGATGGCCTGCTCGTATGATGCCAAGATCAGATTTACTTTCAATCCATGGTTTTCGTACTGAAGAATTCCTTGAAGATAACCAGGCGTGGAGATCAGCACTGAAAGATTATTGGTCCCTACTTACACCTTTGATCTTTTCTGACCATCCAAAGAGACCAGGCGAGGAAGATCCCTTACCCCCATTTAATATGGTGCGGAATGTGATGGACATGAATGCTCGGTATGGTGGTTTGAATGCCGCTTTGTTGGAGGCAGGAAAAACAGTTTGGGTGATGAATGTTATTCCAATGAGCAGTTTAAATACACTTCCTCTGATACTTGACCGAGGATTTTTGGGTGTCTTGCATGACTGGTGCGAGGCATTTCCAACATATCCCAGAACATATGATATGCTTCATGCAGCAGGTCTACTTTCACAAGAATTCAATCATCAATATAAATGTGGGATGCTCGATCTATTTTTAGAGATGGATCGCATACTTAGGCCAGAGGGTTGGGTTGTACTTCGTGATGAAGTTCAAAAAATAGAGGAAGCCAGAGCAATTACAGCCCAATTGCGGTGGGATGCTCGTATAGTCGAACTCGAACACGATAATGAGCAGAGGCTACTTGTCTGTCAGAAACCATTTGTGAGGAAATAGTTCTGTCTTGCCAGATTGGTATACTGGTTAAACAACTATTCACACAGATATCTTCACACATCTGCTCTGTTCAATGACTTGTCTAACCTTTTTAGTAGATTCGTCCTGTATTATTGTTTGCAGCCAAATTGATTAGCTTTTTAGTTCAAATTCTTTCGGAAGATTATTGGAAGGCCATAAAATTGCCCTTCACGTGAGATATCTACCGCTCAAATCTGGACTATGGGAACTCTGTAGCTCCAGTGACAGTTATTCAGTGAAGGCTAGTGTTTGATATTCATTACATAGCGGCGTGCAAAGAACACCTTTGAAATCCAAAGGGTTCCAAAGCTATCATGTCTGTAAGATTAATTAGTACTGTTCCTCACCTCTGGCTATGTAAAATCATATCCAGAGGAAGAAGCTTCTGGTATATTTCTACATCAATTACATTTTCTTATCCAGCAATTATCACGTTCAATGAAATAAGTCTTGTCATGTAAGTTGTTGCACATGTACCATCTGAAAGGGAATGTTATGGAACCTGTGCACTCATTTTGGAAGTTCATTCTTAACCACCTGGTTAAAATTTCAACTTCAACAGTTCAATTTCATGGCAAATTAAGAAAAGTTAAATATCTCCCTGAAGGCAAAATGAGTCGAGGGATCTGCTCTCTGGCCATTATTTTCCCTCAAGTTGAAACTGCATCGAGGTTGTGCCAGCAATCATTTCACGCCCAGTTTTTATTGATAGAAGAGATAAGTTTTACTTTGCTACTATGCAATGTCGGCGTTTAATTTTTACCTTGACACTTACCATGCATTAGCAATCATGTACTTTATCTCTAAATATCAAAGTATAGAAGGGAAAATTTCGATCACTCAAATATTGTACAGCCCAAACCTGTAGCAATTTTGTACTAATTGCTATATTTCTGTT

Ace file of the UniGene sp_v3.0_unigene2756

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9REF5_RICCO	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Source	Gene names
Sma3	AT1G13860; At1g13860; At1g13860/F16A14_2; At2g03480; GSVIVT00015222001; GSVIVT00030070001; Os02g0755000; OsI_08986; OsJ_08431; P0627E03.21; POPTRDRAFT_566940; POPTRDRAFT_643774; POPTRDRAFT_643775; POPTRDRAFT_651268; POPTRDRAFT_651269; RCOM_1036160; RCOM_1

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	homogalacturonan biosynthetic process	GO:0010289	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G78240.1	TSD2, QUA2, OSU1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr1:29433173-29435815 REVERSE LENGTH=684	60%
RefSeq	Arabidopsis thaliana	NP_001154475.1	putative pectin methyltransferase QUA2 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002316092.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: your sequence is longer than subject: 710 - 637

Fln protein: MARPRGRLSESSSSSRSIGNDEEAASFLDSSMRSHVRSHSRSISWSHSLKLWLKQVNLVDLSSNQSSSPLPYKKIPNKSSENGGAMKDLVEQINIRPSSSKCGPLSILKWVFLFFISVLMLIAALGSSFQSSAPSPSVYRGYRRLREQVMAEFSDIGLFSLRAKEQLGLCGKGVEDFIPCYNVSQNRILGYANGDEYDRHCGFSRSMRRPCLVRPPKDYKIPLRWPTGRDVIWSGNVKITKEQLLSSGSLTKRLMLLEDNQISFRSEDALVVDGVEDYSHQIAEMIGLRNESEFIQAGVHTVLDIGCGFGSFGAHLFSKKLLTMCIAGYELYGSQVQLALERGLPAMLGSFISRQLPYPPLSFDMVHCARCGIDWEQKDGAFLIEVDRVLKPGGYFVWTSPLTNLHGATLNNANRNKWKFIQEFTQKLCWILLSQQEETVVWQKTSSKDCYASRNLGGPPPVCNKGQDVESPYYQPLLSCIGGTHSHRWIPILNQTRWPARMMPRSDLLSIHGFRTEEFLEDNQAWRSALKDYWSLLTPLIFSDHPKRPGEEDPLPPFNMVRNVMDMNARYGGLNAALLEAGKTVWVMNVIPMSSLNTLPLILDRGFLGVLHDWCEAFPTYPRTYDMLHAAGLLSQEFNHQYKCGMLDLFLEMDRILRPEGWVVLRDEVQKIEEARAITAQLRWDARIVELEHDNEQRLLVCQKPFVRK*

Protein Length: 711

Fln nts: ATTACGAGGAGGATAGGGAAGTGGCGGGGGACGGTTGTCCCGGGTTCAAAACGCGGGGCATTGGACACGGAAACGAGCGGGTTATTAAGAAGCTGTTTCAGGGGTGATGAATTGTGGAGGTTTCGAACTCGAGATCTGCCTTCACAGGACTTGTGGGGGATGAGAGGAATAATAATTAATTGAAGGCAGGCAGGGGATGCAATAAATGCAGTGGAGTGAATATTGTCGTGCACAGTCCTCTCAGAGGGAATTAGATAAGCCATAAGATAAATCGCGCTACTGCTACTACATTAATGCTAGAAAAGTCTTCCATGATTTCCTCAGGGATTTTTGACCAACAGCGGCGCGAGTACGAATCCTTGTGCGAGCGAGCGATCGTTGATCATTGAACACGTACATCCTGGATGTGCAGTGAGATTTAAAGTGGGGATTTTCGAGATTAGCTTGCTCCAGCTGGTATATTTACTCAGTCTGATTCCATCCTGCGACACTGTATTGGACAGGCGAACAAGATCAG_-_ATGGCACGGCCTCGCGGGCGATTATCAGAGAGCAGCAGTAGCAGCCGCAGCATCGGTAACGATGAAGAAGCCGCGTCGTTTTTAGATTCTTCGATGAGGTCGCATGTTCGAAGTCATTCGAGATCCATTTCGTGGTCACATTCGCTCAAGCTGTGGCTGAAGCAAGTCAATTTGGTGGATCTGAGCTCAAACCAGTCCTCCAGTCCTCTGCCCTACAAAAAGATCCCCAACAAGTCCTCTGAAAACGGTGGGGCAATGAAGGATCTAGTGGAGCAAATCAATATTCGACCAAGTTCTTCGAAATGTGGCCCTCTATCGATTCTCAAGTGGGTTTTTCTGTTCTTCATCAGTGTTCTCATGTTGATTGCTGCTCTGGGTTCCAGCTTCCAATCGTCAGCACCTTCGCCCAGTGTTTACAGAGGTTACAGGCGACTGAGAGAGCAAGTCATGGCGGAGTTCTCGGATATAGGGCTGTTTTCTCTCCGGGCCAAGGAGCAGCTGGGTCTCTGTGGCAAGGGCGTGGAGGACTTCATTCCCTGCTATAATGTGTCTCAGAATCGAATTCTTGGGTATGCGAATGGAGATGAATACGATCGGCATTGTGGGTTTTCGAGATCAATGCGGCGGCCTTGCTTGGTGCGCCCTCCCAAGGACTACAAGATTCCACTCAGGTGGCCTACTGGCAGGGATGTCATATGGAGCGGCAATGTGAAGATCACCAAAGAACAGCTGCTTTCCTCTGGAAGTCTTACAAAAAGGTTGATGTTGCTGGAGGACAATCAAATATCTTTTCGCTCTGAAGATGCACTCGTGGTTGATGGCGTCGAAGATTATTCACATCAAATTGCAGAGATGATTGGGTTGCGCAATGAATCAGAATTCATTCAAGCTGGTGTTCACACAGTATTGGATATTGGCTGCGGTTTTGGTAGTTTTGGGGCTCATCTCTTCTCCAAAAAGTTGTTAACCATGTGCATAGCTGGATATGAGTTATATGGAAGTCAAGTTCAATTAGCTCTTGAGAGGGGTCTTCCTGCAATGCTTGGATCTTTTATTTCTAGACAACTGCCCTATCCTCCACTGTCTTTTGATATGGTTCACTGTGCAAGGTGCGGCATTGATTGGGAGCAGAAAGATGGTGCTTTCTTGATTGAAGTTGATCGGGTTCTTAAACCTGGTGGATACTTTGTTTGGACATCACCACTGACAAACTTACATGGAGCTACACTGAACAATGCAAACCGGAACAAGTGGAAATTTATTCAGGAGTTCACCCAGAAGCTCTGCTGGATTCTGTTGTCACAACAAGAAGAAACAGTTGTTTGGCAGAAGACGAGCAGTAAAGACTGTTATGCTTCTCGCAATCTTGGAGGACCACCCCCTGTCTGCAATAAAGGGCAAGATGTAGAGTCTCCTTATTATCAGCCACTTCTCTCATGCATTGGAGGAACTCATAGTCACAGATGGATCCCCATTTTGAATCAAACAAGATGGCCTGCTCGTATGATGCCAAGATCAGATTTACTTTCAATCCATGGTTTTCGTACTGAAGAATTCCTTGAAGATAACCAGGCGTGGAGATCAGCACTGAAAGATTATTGGTCCCTACTTACACCTTTGATCTTTTCTGACCATCCAAAGAGACCAGGCGAGGAAGATCCCTTACCCCCATTTAATATGGTGCGGAATGTGATGGACATGAATGCTCGGTATGGTGGTTTGAATGCCGCTTTGTTGGAGGCAGGAAAAACAGTTTGGGTGATGAATGTTATTCCAATGAGCAGTTTAAATACACTTCCTCTGATACTTGACCGAGGATTTTTGGGTGTCTTGCATGACTGGTGCGAGGCATTTCCAACATATCCCAGAACATATGATATGCTTCATGCAGCAGGTCTACTTTCACAAGAATTCAATCATCAATATAAATGTGGGATGCTCGATCTATTTTTAGAGATGGATCGCATACTTAGGCCAGAGGGTTGGGTTGTACTTCGTGATGAAGTTCAAAAAATAGAGGAAGCCAGAGCAATTACAGCCCAATTGCGGTGGGATGCTCGTATAGTCGAACTCGAACACGATAATGAGCAGAGGCTACTTGTCTGTCAGAAACCATTTGTGAGGAAATAG___TTCTGTCTTGCCAGATTGGTATACTGGTTAAACAACTATTCACACAGATATCTTCACACATCTGCTCTGTTCAATGACTTGTCTAACCTTTTTAGTAGATTCGTCCTGTATTATTGTTTGCAGCCAAATTGATTAGCTTTTTAGTTCAAATTCTTTCGGAAGATTATTGGAAGGCCATAAAATTGCCCTTCACGTGAGATATCTACCGCTCAAATCTGGACTATGGGAACTCTGTAGCTCCAGTGACAGTTATTCAGTGAAGGCTAGTGTTTGATATTCATTACATAGCGGCGTGCAAAGAACACCTTTGAAATCCAAAGGGTTCCAAAGCTATCATGTCTGTAAGATTAATTAGTACTGTTCCTCACCTCTGGCTATGTAAAATCATATCCAGAGGAAGAAGCTTCTGGTATATTTCTACATCAATTACATTTTCTTATCCAGCAATTATCACGTTCAATGAAATAAGTCTTGTCATGTAAGTTGTTGCACATGTACCATCTGAAAGGGAATGTTATGGAACCTGTGCACTCATTTTGGAAGTTCATTCTTAACCACCTGGTTAAAATTTCAACTTCAACAGTTCAATTTCATGGCAAATTAAGAAAAGTTAAATATCTCCCTGAAGGCAAAATGAGTCGAGGGATCTGCTCTCTGGCCATTATTTTCCCTCAAGTTGAAACTGCATCGAGGTTGTGCCAGCAATCATTTCACGCCCAGTTTTTATTGATAGAAGAGATAAGTTTTACTTTGCTACTATGCAATGTCGGCGTTTAATTTTTACCTTGACACTTACCATGCATTAGCAATCATGTACTTTATCTCTAAATATCAAAGTATAGAAGGGAAAATTTCGATCACTCAAATATTGTACAGCCCAAACCTGTAGCAATTTTGTACTAATTGCTATATTTCTGTT

Fln Alignment:

Contig2756___CGKGVEDFIPCYN---VSQNRI-LGYANGDEYDRHCGFSRSMRRPCLVRPPKDYKIPLRWPTGRDVIWSGNVKITKEQLLSSGSLTKRLMLLEDNQISFRSEDALVVDGVEDYSHQIAEMIGLRNESEFIQAGVHTVLDIGCGFGSFGAHLFSKKLLTMCIAGYELYGSQVQLALERGLPAMLGSFISRQLPYPPLSFDMVHCARCGIDWEQKDGAFLIEVDRVLKPGGYFVWTSPLTNLHGATLNNANRNKWKFIQEFTQKLCWILLSQQEETVVWQKTSSKDCYASRNLGGPPPVCNKGQDVESPYYQPLLSCI----GGTHSHRWIPILNQTRWPARMMPRSDLLSIHGFRTEEFLEDNQAWRSALKDYWSLLTPLIFSDHPKRPGEEDPLPPFNMVRNVMDMNARYGGLNAALLEAGKTVWVMNVIPMSSLNTLPLILDRGFLGVLHDWCEAFPTYPRTYDMLHAAGLLSQEFNHQYKCGMLDLFLEMDRILRPEGWVVLRDEVQKIEEARAITAQLRWDARIVELEHDNE
B8LKS3______________CDSRYSELIPCLDRNLIYQLKLKLELSLMEHYERHCP-PTERRFNCLIPPPEGYKVPIKWPASRDEVWKVNIPHTH---LAEEKSDQNWMIVNGDKINFPGGGTHFHNGADKYIAALADMLKISGGNLSNGGKIRTVLDVGCGVASFGAYLLPLDIMAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSMSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYMQ----DEENLQIWNAMSDLVKRMCWKVASKRDQTVIWVKPLTNDCYLKRAPGTKPPLCNSEDDPDASWHVLMKACITPYSDKIHHAKGSGL---APWPKRLTAPPPRLVELGISEEDFVKDTKAWRQRVNSYWK---------HMKSEIEHDTL------RNIMDMNANLGAFGAALKD--KAVWVMNVVPENGPNTLKAIYDRGLMGTLHNWCEAFSTYPRTYDLLHAWNIFSD--IDERGCSIEDLLLEMDRILRPTGFIIIRDKPAIVNYIMKYLAPLRWDSWSSNVEPESD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
346		50		50	1.0
444			90	10	0.90298
445		90	10		0.90298
446			10	90	0.90298
447			10	90	0.90298
480		50		50	1.0
920			66	33	0.997452
2721	83			16	0.994512
2722	83		16		0.994512
2799		12		87	0.992554
2849	87		12		0.992554
3282	80		20		0.995493
3356	50	50			1.0
3510		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain