SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2750

Length: 1476 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2750

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein Rab11A n=5 Tax=Papilionoideae RepID=RB11A_LOTJA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65270.1	AtRABA4a, RABA4a RAB GTPase homolog A4A chr5:26083437-26084550 FORWARD LENGTH=226	79%
RefSeq	Arabidopsis thaliana	NP_201330.1	RAB GTPase homolog A4A [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002310552.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNS1

Fln msg:

Fln protein: MDMNPKIDYVFKVVLIGDSAVGKSQILSRFARDEFSLDSKATIGVEFQTRTVVIDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVPRWLEELRNHADNNIVIMLVGNKCDLENLRAVPTEDAKEFAQKEGLFFLETSALEATNVETAFLTVLTEIFKIVTKKSLIASQDQGNGNHTSLSGTSIVVSGQEQDSTTKKKSCCTSA*

Protein Length: 221

Fln nts: CCCCGCGTCCTCTGCGTTGATCCCCCTGCTTAAGCAGTGGTATCAACGCAGAGGACGCGGGATACAATACACATACATAGACACATTTCTATATCTGGGAATTTCGGCTCCTCCGCCTGAACAGCGCCTCCGAAGCAACCCTTCTTTTGGGCAAAATAGGGAGAAGGCAGGATATCGGCGCGAGATCTGCCATTGTTCCAGCCGGAGTTTTCCCTGCTGCCGCCAAATTTCGGAAAGCTTGGAGATCGATTTGGCGGAAGAGCGCAAGCATTTGTTAGTTCTCAGGTGAAAAGTTAAAGAATCAGGAAGGC_-_ATGGATATGAATCCGAAAATAGATTATGTGTTCAAGGTAGTCCTGATTGGAGATTCTGCAGTGGGGAAATCCCAGATCCTGTCCAGGTTTGCTAGAGATGAGTTCAGTTTGGATTCCAAGGCCACAATAGGAGTGGAGTTCCAGACCAGGACTGTTGTCATAGACCACAAGTCTGTTAAAGCACAGATATGGGATACTGCTGGGCAAGAGAGATACAGAGCAGTGACAAGTGCTTACTACAGAGGTGCTGTTGGGGCCATGTTGGTGTACGATATAACTAAGCGTCAAACATTTGATCATGTGCCTCGATGGCTTGAAGAATTGAGAAACCATGCTGACAACAACATTGTTATTATGCTGGTAGGCAACAAATGTGATCTCGAGAACCTACGTGCAGTGCCTACAGAGGATGCAAAAGAATTTGCACAGAAGGAAGGCTTATTTTTCTTAGAAACATCAGCCTTGGAAGCAACAAATGTGGAGACTGCATTTTTAACTGTTTTGACAGAGATTTTCAAGATAGTCACCAAAAAGTCTCTTATTGCAAGTCAGGATCAAGGCAATGGAAATCACACCTCATTATCAGGCACTTCGATTGTTGTTTCAGGGCAAGAGCAGGATTCTACTACAAAAAAGAAGAGCTGTTGTACATCTGCGTAA___TTTGTACAATTATTACGAATTTCTCTTTTTACCAGTTTCAATCTTCGCATCATTTTTTTTCCTACCTTCACAACAGCATCGATTGTTGTTCTCTATTTTCCAGCTAGATTAGAGAGAAAACAATTAGATATATCTTTGTCCTGGTTACATCCATTGTTTCAAGTTTGATGTGTGTTAATTTTAAAATTTTGGAACAGAATATAAATTTCGTTCCTGTAATTTGGAATTTTAATCTCCATAGCCAATGTGGCTATGGAGAATTTGTGTAGCTGCAGATTGGACTTGAAACTTGTTATCTTTTCCTAAATTATAGAGAAAAGAAGCAAACATTAGTATTCATTTTTATTCCATCCTATTTTAGATCTGTTGACCTGCATTCCCCCTGTTTTGGTGAAGAAGCTGAGTCTTATATTACAAGCTTACAAAATATCACATGCCAAAATATATGTTTGATATCTTTTCTGTCACGCTTAATGAGAAGACTATCCACGAGGCTTGTCCTGTT

Fln Alignment:

Contig2750___MDMNPKIDYVFKVVLIGDSAVGKSQILSRFARDEFSLDSKATIGVEFQTRTVVIDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVPRWLEELRNHADNNIVIMLVGNKCDLENLRAVPTEDAKEFAQKEGLFFLETSALEATNVETAFLTVLTEIFKIVTKKSLIASQDQGNGNHTSLSGTSIVVSGQEQDSTTKKKSCCTSA
A9NNS1______________MDMNPKIDYVFKVVLIGDSAVGKSQILSRFARDEFSLDSKATIGVEFQTRTVVIEHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVPRWLEELRNHADNNIVIMLVGNKCDLDNLRAVPTEDAKEFAQKEGLFFLETSAMEATNVETAFLTVLTEIFKIVSKKSLIASQDQGNGNHASLSGTSIVVPGQEQDTTTKKKSCCTSA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
117	33	66			1.0
120	33		66		1.0
179		83		16	0.994512
264		25	75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain