SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2692

Length: 1438 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2692

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana] gb\|AAU05478.1\| At1g13130 [Arabidopsis thaliana] gb\|AEE28973.1\| Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Chromosome chr2 scaffold_132, whole genome shotgun sequence	-	-	5.732e-12	-

Source	Gene names
Sma3	At1g13130; At3g26140; At5g16700; At5g17500; F3F19.15; F5E19_40; GSVIVT00002518001; GSVIVT00002519001; GSVIVT00002521001; GSVIVT00002522001; GSVIVT00002523001; GSVIVT00027656001; GSVIVT00027658001; GSVIVT00027661001; GSVIVT00030726001; H0510A06.1; H0510A06

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ricin B lectin domain	IPR000772	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G13130.1	Cellulase (glycosyl hydrolase family 5) protein chr1:4474726-4477820 FORWARD LENGTH=552	50%
RefSeq	Arabidopsis thaliana	NP_172772.2	Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002315653.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPB4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 74 aas, your sequence is shorter than subject: 394 - 543

Fln protein: MAMKIWMFSAFIFLLCFVDTVVSGSLAVKSRWIVDEAAGTRVKLACVNWVSHLEPMVTEGLNRQPLKYITSTITAQGFNCVRLTWATFMVTDPANRNLTVRASLNSLNLSDAVATMSVSNPEFLDLTLMDAYKQVVAGLGEAGLMVILDNHISRPRWCCGYDDGNGFFGDADFDPAVWIQGLSTMATAFKGTAAVVGMSLRNELRGKRSNPADWYKYMQQGAQAVHDANPDVLVIMSGLNYDADLKFLASKPVSLPFTNKIVYEMHWYSFTDGNAWVQKPADTLCKTVTARVNDHTAFVTKTLSPPAPLFISEFGIDQRGTNVGDNKFINCFLAFLTAGDYDWALWTLQGSYYIRNGQPGFEETYGIFNGRWDGLRDPTFVSKLQSLQKPSQG*

Protein Length: 395

Fln nts: GGGGAGAAAAGTTGGTTCGACCTCGAAGTTCA_-_ATGGCGATGAAGATATGGATGTTCTCTGCCTTCATATTTTTATTGTGTTTTGTGGACACCGTTGTGTCGGGTTCTCTTGCAGTGAAATCTCGATGGATCGTGGACGAAGCTGCAGGCACCAGAGTAAAGCTCGCCTGCGTCAACTGGGTATCGCATTTGGAGCCCATGGTCACGGAGGGGCTGAACAGGCAGCCATTGAAATACATAACGAGCACCATTACTGCCCAGGGATTCAACTGCGTGCGCCTCACATGGGCCACCTTCATGGTCACTGACCCGGCGAATCGAAACCTGACGGTTCGAGCTTCCCTGAATTCGTTGAATCTGAGCGACGCAGTGGCCACAATGTCTGTCAGCAACCCAGAATTTCTCGACCTCACGCTCATGGACGCCTATAAGCAAGTGGTCGCGGGGCTGGGAGAGGCGGGGCTGATGGTCATACTCGATAACCACATCAGTAGACCTCGCTGGTGCTGCGGCTACGACGATGGGAATGGATTCTTCGGAGACGCGGATTTTGATCCAGCGGTGTGGATCCAGGGGCTGTCCACCATGGCCACCGCTTTCAAGGGCACGGCAGCGGTCGTGGGAATGAGTCTGCGCAACGAACTGAGAGGCAAGAGATCGAATCCGGCGGACTGGTACAAATACATGCAGCAGGGAGCTCAAGCCGTCCATGACGCCAATCCCGACGTGCTGGTCATCATGTCGGGGCTCAATTACGACGCCGATCTTAAGTTCTTGGCGTCGAAGCCGGTGAGTCTGCCGTTTACAAACAAAATCGTGTATGAGATGCATTGGTATTCATTCACAGACGGGAATGCCTGGGTGCAAAAGCCGGCCGACACGCTCTGCAAAACTGTGACGGCCCGGGTAAACGACCATACTGCATTTGTTACGAAAACATTATCTCCTCCGGCGCCGCTGTTCATCAGCGAGTTTGGAATTGATCAGCGAGGAACGAATGTGGGCGATAACAAATTCATTAACTGCTTCCTTGCCTTTCTTACCGCCGGAGATTACGACTGGGCGCTCTGGACTCTGCAGGGGAGCTACTATATTCGTAATGGGCAGCCTGGCTTCGAAGAGACTTACGGGATTTTTAATGGCCGCTGGGACGGTCTCAGGGATCCCACATTTGTTTCCAAGCTGCAATCCTTGCAGAAACCATCGCAAGGTTGATTTATTAGCTTTCTTTTAATATATATGCATAACTGTGTTTCTTAATTTTGTATCTGGTTTTACTTTGTTTTTCACTTTTGAATGTTCAATTCCCCTCTCGTGGGAAAAGTTAACTGTAAATTTCAATTAGTTGAAACTGCAACTGCAAATTTCGGTCTTTGTATTTCCGAAACTCAGATTTCGAGAATTTTGTATTTAATTTGAAGTTATATTTATCTAATTTG

Fln Alignment:

Contig2692___MAMKIWMFSAFIFLLCFVDTVVSGSLAVKSRWIVDEAAGTRVKLACVNWVSHLEPMVTEGLNRQPLKYITSTITAQGFNCVRLTWATFMVTDPANRNLTVRASLNSLNLSDAVATMSVSNPEFLDLTLMDAYKQVVAGLGEAGLMVILDNHISRPRWCCGYXXXXXXXXXXXXXPAVWIQGLSTMATAFKGTAAVVGMSLRNELRGKRSNPADWYKYMQQGAQAVHDANPDVLVIMSGLNYDADLKFLASKPVSLPFTNKIVYEMHWYSFTDGNAWVQKPADTLCKTVTARVNDHTAFVTKTLSPPAPLFISEFGIDQRGTNVGDNKFINCFLAFLTAGDYDWALWTLQGSYYIRNGQPGFEETYGIFNGRWDGLRDPTFVSKLQSLQKPSQG*FISFLLIY
B8LPB4______________MATKIWMFSAFIFLLCFVGPALSGSLAVKSRWIVDETGGTRVKLACVNWVSHLQPMVTEGLSRQPLKYITSTIVSQGFNCVRLTWATFMVTNPANRNLTVQDSLNSLNLSDAAAAMAVSNPEFLDLTLMDSYKRVVAGLGEAGLMVILDNHISRPQWCCGYNDGNGFFGDADFDPGVWIQGLSAMATAFKGTAAVVGMSLRNELRGSRANAADWYKYMQQGAQAVHDANPDVLVIMSGLNYAADLKFLASKPVSLEFTNKIVYEMHWYSFTDGKAWENMPANKLCGTVTARVNDHTAFVAKTLSPPAPLFISEFGIDERGSNVGDNRFINCFLAFAAEGDFDWALWTLQGSYYLRNGQPGFEETYGIFNGRWDDLRDPPFVSRLKSLQKPFQESFSSSEPLY

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
707		14		85	0.993533
710	85		14		0.993533
722		28		71	1.0
767		83		16	0.994512
815	75	25			0.996473
816	75	25			0.996473
860	25		75		0.996473
905			25	75	0.996473
920		75		25	0.996473
993		80	20		1.0
1043		15	84		0.999986
1058	84		15		0.999986
1206	73	20	6		1.0
1308			62	37	1.0
1318		57		42	1.0
1322		14		85	0.993533
1352		42		57	1.0
1408	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain