SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2678

Length: 1706 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2678

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF303 domain containing protein	-	-	2.0e-17	29%
FL-Next	sp=Probable carbohydrate esterase At4g34215; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Sma3	Receptor protein kinase-like protein	-	-	2.559e-09	-

Source	Gene names
Sma3	At3g53010; At4g34215; F10M10.12; F28A23_20; F8J2_180; GSVIVT00014885001; GSVIVT00014886001; GSVIVT00036650001; H0117D06-OSIGBa0088B06.7; H0201G08.9; LOC_Os03g64030; LOC_Os03g64050; MtrDRAFT_AC150207g1v2; MtrDRAFT_AC150207g2v2; MtrDRAFT_AC158501g26v2; MtrD

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF303, acetylesterase putative	IPR005181	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34215.1	Domain of unknown function (DUF303) chr4:16380203-16381192 REVERSE LENGTH=260	57%
RefSeq	Arabidopsis thaliana	NP_567960.1	uncharacterized protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002300236.1	predicted protein, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q8L9J9

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MDIFVLSGQSNMSGRGGVHGSHWDHFLPQECKAHPSILRLNSHLHWEQAHVPLHADIDKHKVCGVGPGMIFANTILKHYKDPEKARIGLVPCAIGGTAIKEWEKGSTLYKNMITRTKAALNHGGVLRAILWYQGESDTESEKNANSYKHNLERLIHDIRSDLQHPDLLFIQVAITVGDPPYSEFVQKVREAQLGVRIPNVYCVDAKGLPHKEDKLHLTTESQVQLGKMLADVYECHRISDKSNPVAVVDEKKKADFAQVGPVDCTECSQGLELSAECDWKQREFLPLL*

Protein Length: 290

Fln nts: TCCTACCCAAAATTTGCAGCGACAGGTATGCTGACAGAGTGGATAATGTTAGCCCAACGGATGGGGTTCCGGCTCAGCCCATCGTGAACCCAGATGCCACTCACTGTTAGCTCGCTGTCAAAAAAATTCTGAATCTCTGTGCGTGATATGTGACAGGATGTAATGTTGATCGTATTTGGCTCTATATATAATGACTAAGAACAGTTACTACTGTTAAGGCAGCGAAA_-_ATGGATATCTTCGTTCTCTCAGGACAGAGCAACATGTCGGGCAGGGGAGGAGTTCATGGTTCTCATTGGGATCATTTCCTTCCTCAAGAATGCAAAGCACACCCTTCAATTCTCAGGCTCAACTCACATCTTCATTGGGAGCAAGCTCATGTTCCTTTGCATGCCGATATAGATAAACACAAAGTGTGTGGGGTAGGTCCTGGAATGATATTTGCAAACACTATACTGAAGCATTATAAAGATCCCGAAAAAGCTCGTATTGGTTTAGTTCCCTGTGCCATTGGAGGTACCGCGATCAAAGAATGGGAAAAGGGCAGCACACTCTACAAGAATATGATAACTAGAACCAAGGCAGCTCTCAATCATGGAGGCGTTCTAAGAGCAATTCTGTGGTATCAAGGCGAAAGTGATACAGAATCTGAGAAGAATGCCAATAGTTATAAACATAATCTCGAGAGACTTATCCATGATATCCGCTCTGATCTGCAACATCCCGATCTCCTTTTCATCCAGGTGGCAATAACTGTGGGTGATCCTCCCTATAGTGAATTTGTGCAGAAGGTGAGGGAAGCACAGCTGGGTGTTAGAATCCCTAATGTTTACTGTGTTGATGCCAAAGGACTTCCCCACAAGGAAGACAAATTGCACTTGACAACGGAATCACAGGTGCAGCTAGGAAAAATGCTGGCAGATGTCTATGAATGCCACAGGATTTCTGACAAAAGTAATCCAGTGGCAGTTGTGGATGAAAAAAAGAAGGCTGATTTTGCTCAGGTTGGCCCTGTTGATTGTACTGAATGTTCCCAGGGTTTAGAGCTTTCTGCTGAATGTGATTGGAAGCAACGAGAATTTCTGCCACTGCTGTGATTGGAATAAAAGTTCTTGTTTGAAGCATTTGTTAATATTAGACCCGCTCCTTACTAGCAGGAATATCAAAATTTGTTCAATGATTTCTACATATTATTTTCGTCAAAACTTCATGCAATGCTTTCTTGTTTTGTTTTGTTTGTCTATGTTTACAGTGCTAAGGCACTTAAAGCCGCTTGGCATCTGACAGTAGAGTAGACTGGATCTTGTGGAGCACACCCAGGGGTTATAAATCCAAATGCTTACTGTGCGGATGCCTAAGGTCTTTGCCTCAAGAAGGAAAAACTTCACTTGACAACAGAGGCACAGGTGCAGCTGGGCAAGATACTGGCAGATGTCTGTGAAAACCACAGGATTTTTGAAAAAAGTTACCTGGTGCTAGTTCATACTCTTGATATGAAAAGGAAGTATTGTTTCGATCAGGATGGCCTTATTTATAATACTGAATGATCTTGGGTTTAGAGCCTTTTTCTGAATACGAAGTAAAGCAACAAGAATTTCTGTTGTTTCTGTGATCTGAATTAAATTTGGAATTTGAATCATTTGATAATATTAGGATTGCTTCCTGCTAGCCGAAATATTAATATTAGTGTTACTACTAGCAGGAATATC

Fln Alignment:

Contig2678___IFVLSGQSNMSGRGGVHGSH------WDHFLPQECKAHPSILRLNSHLHWEQAHVPLHADIDKHKVCGVGPGMIFANTILKHYKDPEKARIGLVPCAIGGTAIKEWEKGSTLYKNMITRTKAALNHGGVLRAILWYQGESDTESEKNANSYKHNLERLIHDIRSDLQHPDLLFIQVAITVGDPPYSEFVQKVREAQLGVRIPNVYCVDAKGLPHKEDKLHLTTESQVQLGKMLADVY
Q8L9J9______________IFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFANAV-KNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASG----GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLAQAY

SSRs (tot: 1)

Start position	End position	Sequence	Length
1220	1235	TTGTT TTGTT TTGTT T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain