SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2669

Length: 904 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2669

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transcription initiation factor [Oryza sativa Japonica Group] gb\|ABB46979.1\| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group]	-	-	6.0e-26	42%
FL-Next	Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74	-	-	0.0	47%
Sma3	Tfiif-alpha, putative	-	-	2.447e-09	-

Source	Gene names
Sma3	At4g12610; GSVIVT00012000001; LOC_Os10g10990; MtrDRAFT_AC150798g21v2; Os10g0188100; OsI_32946; OsJ_30924; PHYPADRAFT_50627; POPTRDRAFT_1080142; POPTRDRAFT_254823; RAP74; RCOM_0722120; RCOM_1299530; T1P17.200; TF2Falpha; VITISV_003680;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Transcription initiation factor IIF, alpha subunit	IPR008851	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G12610.2	-	2.0e-27	47%
RefSeq	Arabidopsis thaliana	NP_192998.3	transcription initiation factor IIF subunit alpha [Arabidopsis thaliana]	1.0e-27	47%
RefSeq	Populus trichocarpa	XP_002322538.1	predicted protein, partial [Populus trichocarpa]	3.0e-36	46%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
134	33		66		0.997452
272	60		20	20	0.99255
388			85	14	0.993533
405		16		83	0.994512
447	25		75		0.996473
537		16		83	0.994512
540		16		83	0.994512
542		83		16	0.994512
545		16	83		0.994512
546	83			16	0.994512
548	83		16		0.994512
549	83		16		0.994512
550	83	16			0.994512
551		14		85	0.993533
553	71			28	1.0
554	71	28			1.0
555	14		85		0.993533
556		85		14	0.993533
557	71		14	14	0.984337
558	85	14			0.993533
559	14		71		0.984337
560		16		83	0.994512
561		16		83	0.994512
564	83		16		0.994512
569		16		83	0.994512
570	16		83		0.994512
571		16		83	0.994512
572			83	16	0.994512
573		16	83		0.994512
574	16		83		0.994512
723		8		91	0.999807
743		57	42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain