SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2561

Length: 3185 nt

UniGene Fasta

>sp_v3.0_unigene2561
ACCGTGCGTGTCAGGCCTCTGAGTGGCAGAGAACTGGCTCATCGCGATTCGTCGGCTTGGGAATGCATTAATGAAAATACTATTTTGTTCAAGCACTCTTCTCAGGACCGATCTAACTGTCCTTCATCCTACACATTTGATAGAGTTTTCGGACCGTCTTGTTCGACAGAGCGTGTTTACCAGGAAGGAGCAAAAGATGTGACCTTATCAGCACTTACAGGCATTAACGCTACTATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATTCACAATGAGAGGCATTATAGAAAATGCTATTAATGATCTCTATCGCTACATAGAAAAGAATCCAGATAGAGATTTCGTGCTGAAAATTTCTGCTCTTGAAATTTATAATGAGATTGTGAGAGACCTGCTGAATCCTGAAAGTGGAGCTCTTCGTCTCCTTGATGATCCAGAGAAAGGGACTATTGTTGAAAGATTGGTGGAGGAAACGGTGAAGGACAGCAAACATCTTAGACAAATAATTGCTGTTTGTGAAGCTCAAAGACAGGTCGGTGAGACAGCTCTGAATGACAACAGCTCCAGGTCTCATCAAATCATCAGATTGACTGTGGAAAGTACACTGCGTGCAACATCGGGCACCGTAAAGTCCCTGATGGCTAGTTTGAATTTTGTTGATCTTGCTGGAAGTGAGCGTGCATCACAAACGAATGCTGAGGGAGCTAGGCTTAAGGAAGGGTGTCATATAAACCGCAGCTTATTGACACTCAGTACTGTAATTCGTAAACTCAGTGGTGGAAAAAGGAACGGTCACATACCTTATCGTGATTCAAAGCTCACCCGGATTTTGCAGCTTTCCCTGGGAGGTAATTCCAGGACAGCTATTATTTGTACCATGAGTCCTGCACTAAGTCATGTGGAACAGTCTCGGAATACACTTTCTTTTGCCACTCGTGCAAAGGAGGTTACCAACACTGCACAAGTTAATATGGTAATTTCAGAAAAGGAACTAGTGAAACACTTGCAGAAAGAAGTTGCAAGACTTGAGGCTGAGCTGCATACACCTGAGCCAACTACGGCAGTCTGTTCAGAGTCATTGTTGATGGAAAAGGAGCTGCAAATTAAGAAGATGGAGACAGAAATGGAAGAACTCAAGCTCCAACTAGACGCTGCTCAAGCTCGACTAGTTGAATATCGTAGGCTTGAAGAAGAAAAACAGCTATTAAAAACTCCAGAAATAACACAAAGTGAGTCACCTCGTGCGCTTACACAGGTCGTTCCATTGTCTCCAAAGCATGGTGGGGAAAGGGATGCAGAAAACAGGGCACTTGTTGTCGTAGGCAGGTCAAGAAATAACCCAATAAGGCAAACGGTGAGGCAATCAACGACAGCACTTGTGCTTGTACAGGAAATTCGCAAGCTTGAGCAATTGCAAGATGAGCTTGGTCAAGATGCTAGTCGGGCTTTAGAAGCACTTCAAAAGGAGGTAGTATGTCTTCGTTTGGCCCAAGCTGGGATGAATAATGATGCAGCTCAAACAATTGCTAAGCTTCAAGCAGAAATAAAGGACATGAATGCAGTGCGTTCTACCAGTGCTGCCAAAGATGTGGGGCATATTATTAATGTGGATAGGAAGAGTATGAACACTAATTTAATGGAAGAAATTAGCAGATTGCAATCAATGGGAGACACAGCCATTGCTTCTTTGGAAGAGCAGCTGGAAAATGTACAAAAGTCCATAGACAACCTGGTGTTGCCGTCACCTGATCCAAGTCGTCCATCTGATGGGGCATCACCATCACCTGCCAAATCGAAGTCGCAATCACCGAAGAAAAAAACCCTACCACTATCTTTGAATAATAGCAGCAACAGGCAACATTTATTAAGATCCCCATGTTCTCCTCGATCATCATCCCGTCGACACCTCGGTTTTGATAATGAGAATAATCCGCCAAAGAATACTAATTTTGCTACCACCACGCCAACCAAAAGTGAGGATGGTGATGGGGTGTCCTCTAGGGAAGGCACTCCATCCCATCGTAGATCTAGCTCTGTTAATGTCAGGAAAATGCAAAATATGTTCAAAACAGCAGCAGAGGAAAACATTAAAAGCATAAGAACTTATGTTACAGAGCTCAAGGAACGTGTAGCCAAACTTCAGTATCAGAAACAGTTGCTTGTTTGCCAGGTACTGGAATTGGAGGCTAATGAGAACACTCACATAGAGGAGGGAGTAGACGGGGAAGATGAAGCTGTTGAAGGAAGTGCATTGGAAATGGATATTACCACACAGTCCCCCAGGACAAGGCGTTCTTTCTTTGAAAAGCAACAGGAACACATTATTGAACTTTGGGACTTGTGCCAAGTTTCTATAATCCATAGAACGCAGCTCTACTTCCTATTCAAAGGAGATCCAGCTGATGATATATACATGGAAGTAGAGCTGCGCAGACTGACTTGGTTGGAGCAGCATTTTGCCGAATTGGGCAATGCAAGCCCAGCAAATGGGGCCGATGACCCCGTTGTCTCTCTAGCTTCAAGTGGACGGGATCTGAAGCGTGAACGGGAATACCTTGCCAGGCTCATGCGCTCCCGCTTCTCATCTGAAGAGAGGGAGATGCTGTTTGCAAAATGGGAGATTCCGCTTGAAAGTAAACAACGGAAGCTTCAACTAGTCCAAAAGCTCTGGACTAATCCATACAGCAAGCAGCACATTCAAGAAAGTGCAGAAATTGTAGCAAGGCTGGTGGGCTTCTGTGAACCAGGCCATGTTTCGAAGGAAATGTTTGAGCTTAACTTTGCTCCACCAAGTGTCCAAAAGCCCTGGCTCTTTGGGTGGAACCCCATTGCAAAGTTGCTCATTCATTAATTTCCCTTTTGTATTATGTAATATAGGTTTCCAGTTTTCTTTTGGACTGTAATTAAGTCCATTGTTAATTACATGTTGCAGGCCTTCGCCTACTAATGTAACCACATTTTGTGTGTAGATAGATGTAAGGCTTTGATTTTAGATTGTTCCTCGGAAATGTAACCACAGTACATTTTTATCTGAGAGGATACAGTAGAGTACATCTTCTAGTTGTATGTGAGGGCTGAAGACATAAGTAGGAATGGTCTTATGAATGGGCACTACCTGGAGTCCAGGATTCATTATTCTTGTTTAATGTAATAAGCGTTTTGCACACGTCTTTTCTTACA

Ace file of the UniGene sp_v3.0_unigene2561

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinesin-like protein NACK1 n=1 Tax=Nicotiana tabacum RepID=Q8S950_TOBAC	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Sma3	Putative kinesin heavy chain	-	-	1.666e-13	-

Source	Gene names
Sma3	AT4g38950; AT4g39050; At1g18370; At1g21730; At1g59540; At2g21300; At3g43210; At3g51150; At4g38950; At4g39050; At5g42490; AtNACK1; AtNACK2; CHLREDRAFT_98837; CHLREDRAFT_99147; F14P13.22; F19H22.150; F19H22.50; F24M12.190; F7K15_60; GSVIVT00000663001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	male meiosis cytokinesis	GO:0007112	Biological Process	-
Sma3	radial microtubular system formation	GO:0010245	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18370.1	HIK, ATNACK1, NACK1 ATP binding microtubule motor family protein chr1:6319732-6323820 REVERSE LENGTH=974	59%
RefSeq	Arabidopsis thaliana	NP_173273.2	ATP binding microtubule motor family protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002318539.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 860 - 509

Fln protein: MRGIIENAINDLYRYIEKNPDRDFVLKISALEIYNEIVRDLLNPESGALRLLDDPEKGTIVERLVEETVKDSKHLRQIIAVCEAQRQVGETALNDNSSRSHQIIRLTVESTLRATSGTVKSLMASLNFVDLAGSERASQTNAEGARLKEGCHINRSLLTLSTVIRKLSGGKRNGHIPYRDSKLTRILQLSLGGNSRTAIICTMSPALSHVEQSRNTLSFATRAKEVTNTAQVNMVISEKELVKHLQKEVARLEAELHTPEPTTAVCSESLLMEKELQIKKMETEMEELKLQLDAAQARLVEYRRLEEEKQLLKTPEITQSESPRALTQVVPLSPKHGGERDAENRALVVVGRSRNNPIRQTVRQSTTALVLVQEIRKLEQLQDELGQDASRALEALQKEVVCLRLAQAGMNNDAAQTIAKLQAEIKDMNAVRSTSAAKDVGHIINVDRKSMNTNLMEEISRLQSMGDTAIASLEEQLENVQKSIDNLVLPSPDPSRPSDGASPSPAKSKSQSPKKKTLPLSLNNSSNRQHLLRSPCSPRSSSRRHLGFDNENNPPKNTNFATTTPTKSEDGDGVSSREGTPSHRRSSSVNVRKMQNMFKTAAEENIKSIRTYVTELKERVAKLQYQKQLLVCQVLELEANENTHIEEGVDGEDEAVEGSALEMDITTQSPRTRRSFFEKQQEHIIELWDLCQVSIIHRTQLYFLFKGDPADDIYMEVELRRLTWLEQHFAELGNASPANGADDPVVSLASSGRDLKREREYLARLMRSRFSSEEREMLFAKWEIPLESKQRKLQLVQKLWTNPYSKQHIQESAEIVARLVGFCEPGHVSKEMFELNFAPPSVQKPWLFGWNPIAKLLIH*

Protein Length: 861

Fln nts: ACCGTGCGTGTCAGGCCTCTGAGTGGCAGAGAACTGGCTCATCGCGATTCGTCGGCTTGGGAATGCATTAATGAAAATACTATTTTGTTCAAGCACTCTTCTCAGGACCGATCTAACTGTCCTTCATCCTACACATTTGATAGAGTTTTCGGACCGTCTTGTTCGACAGAGCGTGTTTACCAGGAAGGAGCAAAAGATGTGACCTTATCAGCACTTACAGGCATTAACGCTACTATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATTCACA_-_ATGAGAGGCATTATAGAAAATGCTATTAATGATCTCTATCGCTACATAGAAAAGAATCCAGATAGAGATTTCGTGCTGAAAATTTCTGCTCTTGAAATTTATAATGAGATTGTGAGAGACCTGCTGAATCCTGAAAGTGGAGCTCTTCGTCTCCTTGATGATCCAGAGAAAGGGACTATTGTTGAAAGATTGGTGGAGGAAACGGTGAAGGACAGCAAACATCTTAGACAAATAATTGCTGTTTGTGAAGCTCAAAGACAGGTCGGTGAGACAGCTCTGAATGACAACAGCTCCAGGTCTCATCAAATCATCAGATTGACTGTGGAAAGTACACTGCGTGCAACATCGGGCACCGTAAAGTCCCTGATGGCTAGTTTGAATTTTGTTGATCTTGCTGGAAGTGAGCGTGCATCACAAACGAATGCTGAGGGAGCTAGGCTTAAGGAAGGGTGTCATATAAACCGCAGCTTATTGACACTCAGTACTGTAATTCGTAAACTCAGTGGTGGAAAAAGGAACGGTCACATACCTTATCGTGATTCAAAGCTCACCCGGATTTTGCAGCTTTCCCTGGGAGGTAATTCCAGGACAGCTATTATTTGTACCATGAGTCCTGCACTAAGTCATGTGGAACAGTCTCGGAATACACTTTCTTTTGCCACTCGTGCAAAGGAGGTTACCAACACTGCACAAGTTAATATGGTAATTTCAGAAAAGGAACTAGTGAAACACTTGCAGAAAGAAGTTGCAAGACTTGAGGCTGAGCTGCATACACCTGAGCCAACTACGGCAGTCTGTTCAGAGTCATTGTTGATGGAAAAGGAGCTGCAAATTAAGAAGATGGAGACAGAAATGGAAGAACTCAAGCTCCAACTAGACGCTGCTCAAGCTCGACTAGTTGAATATCGTAGGCTTGAAGAAGAAAAACAGCTATTAAAAACTCCAGAAATAACACAAAGTGAGTCACCTCGTGCGCTTACACAGGTCGTTCCATTGTCTCCAAAGCATGGTGGGGAAAGGGATGCAGAAAACAGGGCACTTGTTGTCGTAGGCAGGTCAAGAAATAACCCAATAAGGCAAACGGTGAGGCAATCAACGACAGCACTTGTGCTTGTACAGGAAATTCGCAAGCTTGAGCAATTGCAAGATGAGCTTGGTCAAGATGCTAGTCGGGCTTTAGAAGCACTTCAAAAGGAGGTAGTATGTCTTCGTTTGGCCCAAGCTGGGATGAATAATGATGCAGCTCAAACAATTGCTAAGCTTCAAGCAGAAATAAAGGACATGAATGCAGTGCGTTCTACCAGTGCTGCCAAAGATGTGGGGCATATTATTAATGTGGATAGGAAGAGTATGAACACTAATTTAATGGAAGAAATTAGCAGATTGCAATCAATGGGAGACACAGCCATTGCTTCTTTGGAAGAGCAGCTGGAAAATGTACAAAAGTCCATAGACAACCTGGTGTTGCCGTCACCTGATCCAAGTCGTCCATCTGATGGGGCATCACCATCACCTGCCAAATCGAAGTCGCAATCACCGAAGAAAAAAACCCTACCACTATCTTTGAATAATAGCAGCAACAGGCAACATTTATTAAGATCCCCATGTTCTCCTCGATCATCATCCCGTCGACACCTCGGTTTTGATAATGAGAATAATCCGCCAAAGAATACTAATTTTGCTACCACCACGCCAACCAAAAGTGAGGATGGTGATGGGGTGTCCTCTAGGGAAGGCACTCCATCCCATCGTAGATCTAGCTCTGTTAATGTCAGGAAAATGCAAAATATGTTCAAAACAGCAGCAGAGGAAAACATTAAAAGCATAAGAACTTATGTTACAGAGCTCAAGGAACGTGTAGCCAAACTTCAGTATCAGAAACAGTTGCTTGTTTGCCAGGTACTGGAATTGGAGGCTAATGAGAACACTCACATAGAGGAGGGAGTAGACGGGGAAGATGAAGCTGTTGAAGGAAGTGCATTGGAAATGGATATTACCACACAGTCCCCCAGGACAAGGCGTTCTTTCTTTGAAAAGCAACAGGAACACATTATTGAACTTTGGGACTTGTGCCAAGTTTCTATAATCCATAGAACGCAGCTCTACTTCCTATTCAAAGGAGATCCAGCTGATGATATATACATGGAAGTAGAGCTGCGCAGACTGACTTGGTTGGAGCAGCATTTTGCCGAATTGGGCAATGCAAGCCCAGCAAATGGGGCCGATGACCCCGTTGTCTCTCTAGCTTCAAGTGGACGGGATCTGAAGCGTGAACGGGAATACCTTGCCAGGCTCATGCGCTCCCGCTTCTCATCTGAAGAGAGGGAGATGCTGTTTGCAAAATGGGAGATTCCGCTTGAAAGTAAACAACGGAAGCTTCAACTAGTCCAAAAGCTCTGGACTAATCCATACAGCAAGCAGCACATTCAAGAAAGTGCAGAAATTGTAGCAAGGCTGGTGGGCTTCTGTGAACCAGGCCATGTTTCGAAGGAAATGTTTGAGCTTAACTTTGCTCCACCAAGTGTCCAAAAGCCCTGGCTCTTTGGGTGGAACCCCATTGCAAAGTTGCTCATTCATTAATTTCCCTTTTGTATTATGTAATATAGGTTTCCAGTTTTCTTTTGGACTGTAATTAAGTCCATTGTTAATTACATGTTGCAGGCCTTCGCCTACTAATGTAACCACATTTTGTGTGTAGATAGATGTAAGGCTTTGATTTTAGATTGTTCCTCGGAAATGTAACCACAGTACATTTTTATCTGAGAGGATACAGTAGAGTACATCTTCTAGTTGTATGTGAGGGCTGAAGACATAAGTAGGAATGGTCTTATGAATGGGCACTACCTGGAGTCCAGGATTCATTATTCTTGTTTAATGTAATAAGCGTTTTGCACACGTCTTTTCTTACA

Fln Alignment:

Contig2561___DRDFVLKISALEIYNEIVRDLLNPESGALRLLDDPEKGTIVERLVEETVKDSKHLRQIIAVCEAQRQVGETALNDNSSRSHQIIRLTVESTLRATSGTVKSLMASLNFVDLAGSERASQTNAEGARLK-EGCHINRSLLTLSTVIRKLSGGKRNGHIPYRDSKLTRILQLSLGGNSRTAIICTMSPALSHVEQSRNTLSFATRAKEVTNTAQV
D5ACB2______________EQGFRLWLSFFEIYGGKLYDLLG-DRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQI--HIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1411	10		90		0.90298
1413			90	10	0.90298
1414		90	10		0.90298
1415	90			10	0.90298
1427	90		10		0.90298
1513	12		87		0.992554
1519			87	12	0.992554
1680	66		33		0.997452
2011	66		33		0.997452
2084	20	80			0.995493
2086	20		80		0.995493
2089		20	80		0.995493
2090	80			20	0.995493
2091	80			20	0.995493
2092	80	20			0.995493
2094		80		20	0.995493
2095	80	20			0.995493
2098	80	20			0.995493
2099	80	20			0.995493
2100	80	20			0.995493
2101	80	20			0.995493
2107	80	20			0.995493
2108	80	20			0.995493
2109		20	80		0.995493
2110	80			20	0.995493
2111	80	20			0.995493
2180			85	14	0.993533
2217	14		85		0.993533
2260		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain