SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2455

Length: 1857 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2455

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	N-acetylglucosaminyltransferase, putative n=1 Tax=Musa acuminata RepID=Q1EP08_MUSAC	-	-	0.0	69%
FL-Next	tr=N-acetylglucosaminyltransferase, putative; Musa acuminata (Banana) (Musa cavendishii).	-	-	0.0	69%

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.	EC:2.4.1.143	-	2.121e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	N-Glycan biosynthesis	00510	2.121e-09	%
Sma3	Various types of N-glycan biosynthesis	00513	2.121e-09	%
Sma3	Metabolic pathways	01100	2.121e-09	%

Source	Gene names
Sma3	At2g05320; GSVIVT00029100001; MA4_112I10.20; MGAT2; OJ1695_D07.5; Os02g0798100; OsI_09295; OsJ_08734; PHYPADRAFT_113818; PHYPADRAFT_226628; POPTRDRAFT_896156; RCOM_0347110; VITISV_012916; gnTII; gnt1;

Source	GOs	Term	Type	Identity
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	GO:0003827	Molecular Function	-
Sma3	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	GO:0008455	Molecular Function	-
Sma3	oligosaccharide biosynthetic process	GO:0009312	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	N-acetylglucosaminyltransferase II	IPR007754	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G05320.1	beta-1,2-N-acetylglucosaminyltransferase II chr2:1936016-1937308 FORWARD LENGTH=430	68%
RefSeq	Arabidopsis thaliana	NP_178601.2	beta-1,2-N-acetylglucosaminyltransferase II [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002321199.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: Q1EP08

Fln msg: Overlapping hits, possible frame ERROR between 1114 and 1113, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 442 - 482

Fln protein: MVPQNRNRSNKVALKRFVTLACLIGIGLLGLLVLLHTPNGFSQAARRDSREINVILFNKELYLPPQNNLSRELERRNSLPPLNIDLHPKLAKNHIKIVLYVHNRPQYLQLVVDSLSKVEGIDETLLIVSHDGYFEEMNKIIDGIRFCQVKQIFAPFSPHLFADSFPGVSPGDCQNNDDTLIKKCEGNADQYGNHRSPKIVSLKHHWWWMMNWIWDGMEETSRHTGHILFIEEDHFIFPNAYRNIQILSTLKQQKCVECYATNLxxSPDVNYKGEKSENLIAEKMGNIGYAFNRTVWRKIHSKAREFCAFDDYNWDITMWAVVYPSFGTPVYSLRGPRRSAAHFGKCGLHQGTNKGVPCFDNGQATPAIEETDKVVNIKPEWEIYKYEHQGGYQAGFKGWGGWGDDRDHRLCLDFASMYHIAAFSHGSTRPGRDVCFHLQLL*

Protein Length: 443

Fln nts: ACATTTCTACGAATTGGCCGAACGGCGAGAGGTGGTTTTCCTTAAGGGCATGCAACAGGGGGGAGTTTTGACCTCCTCATAGGGTTATGAAGAGCAGATATATCTGGCTGTTGATGGCAGAGGCTTCAGATGAATAAACGCCTCAGAAATCATGTATTTCAAAGCCGAAATTCAGTTATTTGACAATGAGTATTACACTGGTTCAATTGGTTTCTAGTCTTCTGCGAGGCCAGCAAATAAAATTCGAGGTGGGTAGCAGTCATCCTGCATGTTTTTTGTCATTACAATAGATAATACAATGAGATATACAATCTAGATAACC_-_ATGGTTCCACAGAACAGAAACCGCAGTAATAAGGTCGCATTGAAGCGTTTCGTTACCCTGGCTTGTTTGATTGGAATTGGGTTATTGGGGCTGCTTGTTCTTCTCCATACACCAAATGGGTTTTCGCAGGCTGCCCGTAGGGACTCCAGGGAAATAAATGTAATCCTTTTCAATAAGGAACTCTATCTACCCCCTCAAAATAATTTATCCAGAGAGCTTGAAAGAAGAAACTCCTTGCCACCTCTTAACATAGATCTTCATCCAAAGTTGGCCAAAAATCATATAAAGATTGTTCTGTATGTGCACAATAGGCCACAGTATTTGCAGTTAGTTGTAGATAGCCTTTCCAAAGTGGAGGGCATCGACGAGACTTTACTTATTGTAAGCCATGACGGCTATTTTGAAGAAATGAATAAGATAATAGATGGAATAAGGTTTTGCCAGGTAAAACAAATTTTTGCCCCCTTTTCCCCTCACTTGTTTGCTGATTCATTTCCAGGCGTGTCACCTGGAGATTGCCAGAATAACGATGACACCTTAATTAAAAAGTGTGAAGGAAATGCTGACCAGTATGGAAACCACAGGTCTCCCAAAATAGTGTCTCTGAAGCACCATTGGTGGTGGATGATGAATTGGATTTGGGATGGGATGGAAGAAACCAGTCGACACACTGGACATATACTTTTCATAGAAGAGGACCATTTTATTTTTCCCAATGCTTACAGAAATATTCAAATTTTATCTACATTGAAGCAACAGAAGTGTGTTGAGTGCTACGCCACAAACTTGxxxxxxTCACCTGATGTGAATTATAAGGGAGAAAAATCAGAGAATTTGATTGCCGAGAAGATGGGCAATATTGGGTATGCTTTCAATAGAACAGTCTGGAGAAAAATCCATTCTAAGGCAAGAGAGTTTTGTGCTTTTGATGATTACAACTGGGATATAACCATGTGGGCAGTTGTGTATCCTTCGTTTGGCACTCCGGTTTACTCTTTGAGAGGGCCTAGGAGAAGTGCAGCTCACTTTGGAAAATGTGGCTTGCATCAGGGGACCAACAAGGGCGTTCCATGTTTTGACAATGGTCAGGCAACTCCTGCAATTGAAGAAACTGACAAAGTTGTTAATATAAAGCCTGAATGGGAGATATACAAGTATGAGCATCAAGGAGGTTACCAGGCTGGTTTTAAAGGTTGGGGGGGCTGGGGTGATGATAGGGATCATAGGCTGTGTCTTGATTTTGCCTCAATGTATCATATTGCAGCTTTCTCTCATGGCTCAACTAGACCTGGTCGTGACGTTTGCTTTCACTTACAGCTTTTGTGA___CATATCGGCTTTTCAATGATGCCGATGTCTACTTGCAATGGTGCAAGTCTCAAATACTTTGCCTTAAATATTGTATACATGCTTCCCAAAGCACACATACTGGAATACCAGCATGTATAGGATTTCCAACAGTAAGAAATATACTGGTGGAAAAAATTACTTAGAAATTGGCAGTTTTATGATTTTCCCCTGGTTATTCCTCAAGCTGAGA

Fln Alignment:

Contig2455___VILFNKELYLPPQNNLSRELERRNSLPPLNIDLHPKLAKNHIKIVLYVHNRPQYLQLVVDSLSKVEGIDETLLIVSHDGYFEEMNKIIDGIRFCQVKQIFAPFSPHLFADSFPGVSPGDCQNNDDTLIKKCEGNADQYGNHRSPKIVSLKHHWWWMMNWIWDGMEETSRHTGHILFIEEDHFIFPNAYRNIQILSTLKQQKCVECYATNxxP-DVNYKGEKSENLIAEKMGNIGYAFNRTVWRKIHSKAREFCAFDDYNWDITMWAVVYPSFGTPVYSLRGPRRSAAHFGKCGLHQGTNKGVPCFDNGQATPAIEETDKVVNIKPEWEIYKYEHXXXXXXXXXXXXXXXDDRDHRLCLDFASMYHIAAFSHG
Q1EP08______________VIHLKSELKLPKQSILSMSLDQRNKLPPRNMDRFPNLAKDHTKIVLYVHNRPQYLRLVVSSLAAVEGISETMLIVSHDGYFAEMDRIVQDIRFCQAKQIFAPYSPHLFPDGFPGVSPGDCHDKDDPIVTKCNGTADQYGNHRSPRTVSLKHHWWWMMNTVWDGMEETKGFSGHILFIEEDHYIYPNAYRNLQLLIGLKPMKCPECYAANxxPMDVNSIGEGWDMLVAEKMGNVGYSFNRTVWRKIHTKAKEFCSFDEYNWDITMWATVYPSFGTPVYTLRGPRRSAAHFGKCGLHQGRGKSSSCIDNGEARFQLDEIDKILNIKPDWKVHVVKKQSGYQAGFKGWGGWGDERDRELCLSFAYMYHDVQISSG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1218		80		20	0.995493
1224			28	71	1.0
1262		85		14	0.993533
1321		10		90	0.90298
1323	90			10	0.90298
1324		10	90		0.90298
1325	90		10		0.90298
1326			90	10	0.90298
1328	10		90		0.90298
1332	90			10	0.90298
1335	90			10	0.90298
1337	90	10			0.90298
1339		10	90		0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain