SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2405

Length: 1277 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2405

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-binding protein n=1 Tax=Lotus japonicus RepID=Q9SCA1_LOTJA	-	-	2.0e-39	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G07490.1	AGD11 ARF-GAP domain 11 chr3:2391189-2391650 FORWARD LENGTH=153	56%
RefSeq	Arabidopsis thaliana	NP_187405.1	calmodulin-like protein 3 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002301768.1	predicted protein, partial [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKN2

Fln msg:

Fln protein: MADDSAEGVSEKAVGREELRRVFSTFDKNGDGLISKQEMKESFDNLRLCVGEEELASTIRTVDVNGDGYVDFEEFVSLYESISGKRGEEEKADHEDADLAEAFGVFDENGDGLITVEELQSVLKSLGLQEGRAFGECKKMIQKVDKDGDGMVNYMEFKEMMSAGFGRN*

Protein Length: 170

Fln nts: GAAGGATCTCTAGAATGTGGCGTGCGGAAAATTCTGTATAGGCACCCCTATTTTTAAATCATGGCGTATGACGCCAGAGTTTCTCGCAGAAGCGAATTTCAACGTTACGTTGCGTGGTGCAGTTCGTTTGTTACTATATATTGATTCTCTGTTTCGATAGGATTCGCGGATCCAGATTCAATTGAGGGAATCAAAGAATTCTTTGTGAAATTTTCAGCGGATATCGAGACAGCGAGCTTAGATCTGAGAACTCATTTTCTTTACGGCCTTCGTTCAGATATATTTTTCGCAGGAAGTTGAAGCTCTGTTTCGACTTTAAATCCTCTGAAGAGGCTCTAATA_-_ATGGCGGATGACTCGGCCGAGGGGGTGTCGGAGAAAGCCGTGGGCAGAGAGGAACTGAGGAGGGTTTTCTCGACCTTCGACAAGAATGGCGACGGGCTTATCAGCAAACAGGAGATGAAAGAGTCCTTTGATAATCTCAGGCTGTGCGTGGGCGAAGAGGAATTGGCCTCCACGATTCGAACCGTGGACGTCAATGGCGATGGGTACGTGGATTTTGAGGAGTTCGTTTCGCTGTATGAATCGATTAGTGGTAAGCGAGGGGAAGAAGAAAAGGCGGATCATGAAGATGCGGATCTAGCGGAGGCGTTCGGCGTTTTCGACGAGAATGGCGACGGTTTGATAACGGTGGAAGAGCTCCAGTCTGTGCTCAAGTCGCTGGGTCTCCAGGAAGGCCGAGCGTTTGGGGAGTGCAAGAAGATGATACAGAAAGTTGATAAAGATGGCGACGGTATGGTCAATTATATGGAGTTTAAGGAGATGATGAGCGCTGGATTTGGGAGAAATTAA___TTTCGGAATTTTAGAGGTGGCGTGTGTAGAGATTTCGGTTTAATCGGTTGGTGTATTCTTTCCTGTATATATCCAGTTATATACAGTTGCTCACAAATGTATTTTTACTGTATATATACAGTTACACACGTGTATTCTTTCCTTCTCAAACGGTTACGTTCACTGCTATTTTGCTAGAGCTTTGAAGCAGATCTTTGATGGTCACTCAGATCTGAACCAGTTGATCTCCATCCCAAACATTTGTTAAACACCCAGCCTCTGATGGCCGGCCTGGCTGGCTTCCTTCTTTCTCCCTGTATGTTCCAAAGTGTAACAGCCTTTCCAAACTTTGACCTATTTGTGGCCATGGAATTGGTAAAGGATATGTGAATCTGTGAATTATGAATTCAACCAGAGTTATGATAAGTCTTCAGCGTTTAGTAGCCATAG

Fln Alignment:

Contig2405___SEEALIMADDSAEGVSEKAVGREELRRVFSTFDKNGDGLISKQEMKESFDNLRLCVGEEELASTIRTVDVNGDGYVDFEEFVSLYESISGKRGE--EEKADHEDADLAEAFGVFDENGDGLITVEELQSVLKSLGLQEGRAFGECKKMIQKVDKDGDGMVNYMEFKEMMSA
B8LKN2______________SEKALTMADNSAEGVSNNAVGRDELRRVFAIFDKNGDGLISKQEMRESFDKLRLCIGEEELASTIRTVDVNGDGYVDFDEFVTLYESMSGKRGEGGDAKAEHEDADLAEAFGVFDENGDGLITVEELQSVLKSLCFEEGRTIGDCKKMIQKVDKDGDGMVNYMEFKEMMSA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1155		63		36	1.0
1177	60		40		1.0
1232	60		40		1.0
1240	60		40		1.0
1243	44	55			1.0
1246	55		44		1.0
1249	12			87	0.992554
1250	87	12			0.992554
1254		16		83	0.994512
1255	80		20		0.995493
1270	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain