SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2398

Length: 1834 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2398

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	APO protein 2 [Arabidopsis thaliana] gb\|AED96973.1\| APO protein 2 [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	APO protein 3, mitochondrial, putative	-	-	3.983e-09	-

Source	Gene names
Sma3	APO1; APO2; APO3; At1g64810; At5g57930; At5g61930; EMB1629; GSVIVT00006791001; GSVIVT00016212001; GSVIVT00017210001; GSVIVT00017212001; GSVIVT00018970001; H0525G02.2; K22G18.5; MTI20.19; OJ1634_B10.121; OSJNBa0008M17.9; Os02g0732900; Os04g0615500; Os07g06

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3		IPR008512	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57930.2	APO2 Arabidopsis thaliana protein of unknown function (DUF794) chr5:23454690-23456354 FORWARD LENGTH=443	48%
RefSeq	Arabidopsis thaliana	NP_200601.3	APO protein 2 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002325131.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9B9

Fln msg:

Fln protein: MGALPCTTFQSVSGNIIIGGSEKTQGFRHFFLGGLRCNDFYRSSSCEKGDILSKGQRVPLLKKLSSMVVHQRHQKVVIAGKYPQNVDLPADLPQTKKKPFPIPVKELRRAARERQKNKKGRPRRPIGPPRNGLLVPELIPVAHKVFEARTQLVNGVAELLKVVPIHACRHCSEVHVGPIGHPFKTCLGYNHGARNSLHEWANCFLEDIIVPVESFHLFDRLGSRLTHIERFSVERIPSVVELCIQAGLDLPQFATRRRIEPVYYFGKQMFDPNEDEAIYDMKKTESNELLKFYEPSQQSNKLLSSEEIQNLAEQTYQAWNTMRQGARKLMRKYAVKVCGYCPEVHVGPFGHRARLCVAYKHQQRDGRHGWQAATIDDLIPPKYVWHVPDPHGSPLRNELRRFYGQAPAVVELCVQAGAATPEEYKPMMRLDTAIPDSFQEAGKVA*

Protein Length: 447

Fln nts: GAGATAATTGCAACATCTCAGAATGAAACG_-_ATGGGCGCCCTTCCCTGTACCACATTTCAAAGTGTATCTGGAAACATAATCATTGGTGGGTCTGAAAAAACGCAGGGCTTTCGCCATTTTTTCCTAGGGGGGCTTCGCTGCAATGACTTCTACAGATCGTCAAGCTGTGAGAAGGGTGATATACTGAGTAAAGGTCAACGTGTTCCCTTACTGAAGAAACTGAGTTCAATGGTAGTTCATCAACGCCATCAAAAAGTTGTAATTGCAGGGAAGTACCCTCAAAATGTGGACCTTCCAGCGGATTTGCCACAGACTAAAAAGAAGCCATTTCCCATACCTGTGAAGGAACTAAGACGTGCTGCAAGGGAAAGACAGAAGAATAAGAAAGGACGACCGAGAAGACCTATTGGACCTCCAAGAAATGGCTTACTGGTTCCAGAGCTGATCCCTGTTGCACACAAGGTTTTCGAAGCAAGAACACAGCTAGTGAATGGTGTTGCAGAACTGCTTAAAGTGGTACCCATTCATGCCTGCAGACATTGCTCAGAAGTGCATGTTGGCCCCATTGGTCATCCGTTTAAAACTTGTCTGGGTTACAATCATGGAGCTCGGAACTCACTTCACGAATGGGCCAACTGTTTCCTTGAGGACATTATTGTTCCTGTTGAATCATTTCACCTTTTTGACCGCCTTGGAAGCCGTTTGACCCATATAGAGAGGTTCTCAGTAGAGAGGATACCGTCAGTGGTGGAACTTTGCATTCAAGCAGGCTTAGATTTGCCTCAGTTTGCAACAAGGAGGAGGATTGAGCCTGTTTATTATTTTGGAAAGCAGATGTTTGATCCTAATGAAGATGAAGCAATCTATGATATGAAGAAAACAGAATCAAATGAGCTATTAAAATTTTATGAGCCATCCCAACAGAGCAACAAGCTTCTATCTTCTGAGGAAATCCAGAATTTAGCAGAACAAACTTATCAGGCATGGAATACCATGAGGCAGGGAGCTAGGAAACTGATGAGAAAATATGCTGTAAAAGTTTGTGGCTATTGTCCAGAAGTGCATGTTGGTCCCTTTGGGCACAGGGCTCGACTTTGCGTGGCATACAAACATCAACAACGTGATGGACGGCATGGCTGGCAAGCAGCAACCATTGATGACCTTATACCTCCAAAATATGTTTGGCACGTTCCTGATCCACATGGTTCTCCTTTGAGGAATGAGCTGAGGCGGTTCTATGGTCAGGCCCCTGCTGTAGTGGAGCTTTGTGTACAGGCAGGGGCAGCAACACCTGAAGAATATAAACCCATGATGAGGCTAGACACTGCAATTCCAGATTCCTTTCAGGAGGCAGGTAAGGTTGCATGA___TAATTTTAAGCAAAAGCTTGGCAACCAAATTATCCCGAAGGATTGGTAATAGTTCAACAACCTATGCGAGAGTTGAAAGCATGGAAAGTGGTTCTAAAATTTAAATATAACAGTAACCATGAGAGTTCATCGTTGTTTTTTCTTCAATTTGGGTTATAATTGGAAGAGTTGCAAGTCAACTTGAGCTTTGAGATGGAAATGCTAAAATTCCTACATGGTGGCTGAGTTTTGACATTTAAGAGTATCATGAAAGGAGTTTGTATTGTTAATTCATTTTATTCCTCGTGATACCACATAAAGCTTTTCACATCATTATAAATCCTAATGGTATTTCTTGTCTGCATGGAGACTTAGATGATTTCCTCATTTGTCTATCAACTTTGGGAGTGGTAATGTATTAAGGATGGTTGCTGTTAGAAATGCAAATCTGTAAAATACAATATCATGAAGGAAGTTCTATGAAATA

Fln Alignment:

Contig2398___VDLPADLPQTKKKPFPIPVKELRRAARERQXXXXXXXXXXXXXXXXXLLVPELIPVAHKVFEARTQLVNGVAELLKVVPIHACRHCSEVHVGPIGHPFKTCLGYNHGARNSLHEWANCFLEDIIVPVESFHLFDRLGSRLTHIERFSVERIPSVVELCIQAGLDLPQFATRRRIEPVYYFGKQMFD-----PNEDEAIYDMKKTESNELLKFYE----PSQQSNKLLSSEEIQNLAEQTYQAWNTMRQGARKLMRKYAVKVCGYCPEVHVGPFGHRARLCVAYKHQQRDGRHGWQAATIDDLIPPKYVWHVPDPHGSPLRNELRRFYGQAPAVVELCVQAGAATPEEYKPMMRLDTAIPDSFQEAGKVA
D5A9B9______________VDIPKPLPKRKRKPLITPIKELIRRARKVREMNQDVTERVLQRPENGLLVRRLVPVAHQVYQAKTALYEGVAKLVDVIPVQACRNCSEVHIGSQGHQLKTCEG-PMSCSSKKHVWRKGTVDDILVTVESFHLYDRVGRAVTHKERFMVDRLPAIIELCIQAGLDLPDFPTKRRAYPVYMVAGKIVDFEKCSPPKDSNSMDVD--EDFESRDFWDSKKQPKRDESPLSTAEDIQRMAQQTLEAWEDMKSGARKLMEKYAVKTCAYCPEVQVGPKGHRARICQAHKHQWRDGQHGWQEATFDDLIPPKYVWHVRDPNGPPLENKMRKYYGMAPAVVELCVQGGATVPDEYKSMMRLDVTIPD-FEEIKFVA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
390	20		80		0.995493
448	14			85	0.993533
449		85		14	0.993533
450		85	14		0.993533
451		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain