SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2384

Length: 4089 nt

UniGene Fasta

>sp_v3.0_unigene2384
TGTAGATCTGGTGGAAGCTAGTGTGATTGGATAAGTTACAGTGGCTCTCTGTATTGCCATTGCTTCCTACTGGCGTGAATTTTCCAACTTTTAGTTGGTAAACCCATGTAAACTGAGTGCCAGAGCCTTTTCCTGTTTCATGCAGTGAGCTGATACCCTTCTACTGAATCCTTTTCTCTGCCTTGATAAGAACAAGTAAGATATAAGGAATCCATCCTTCGTTTCTCCATGGGGCAGAGTACGTTCGTTGCGCCTTAAATTATCATGTTCTCTGTTGGGTACATGTGAAAAGATTGTCATGGAGACATATAAACTGGCTCCTTAACTTCCCCTGTTATGCCTCAGAATTCAGTAGCTGTGAAACGTTGACTTCTGCATTTTCTTAGAAAAATCAGCATGTAAAACCCACAGCTTTCCAATCTATATGGACTTCATATCCAGTACTTTTGATGGAGTTGGTAAGGAAAATGGATTTTGGACAGAAATCTTCAGTCTGAATCTTATCCCCATCAAAATTGAAGCCTACATCTTTGCCCCTTAATTTCTCTGCATCCATGCCTATGGCATTTGACATGATGGCTTCTCGTTAGTTGCAATCTTAGACAATTTGACATGATGGCTTCTCGTTAGCTGCAGTCTCAGACAGCAGATGTCCAATATAGAGAGTCAAATTCTTGTTGTATGTCTTCAGCTATGGAATCCAAGTAATTCTAGAAAATTCACATACAGTTTTCTGGCTGAATCACACTATGGCTCAGGACATATTTGCTCCCCTTCATCTTTAGTCAGTTTTGTTCCCAAGTGTAAATTTGACCCCAGAATTTCTCTGGAGAAGCTTATTATTTTCTGTATAGAACATGTTTCAGCGGTTAACTTGGTTAGTCATGTTTCTGATCTTTTAGCTTCAGAAACAATATAAAGAGGATATACTTCTGTGGAACAAAATAATACAAAGAGTTCCCTTTGTACAAGGAATACAATTCAGTCTGTAATTATACAGTTTTGTTGAAATATTTTGAGTTTTCAATTTTGATGTCTAGATGGAGATCCAAGTTTTGTCCTGTATCTGATAGAAGAGGCTTTTTAATGCTGCTAATATTGGTCATTTTTTCCCTGTAGTTATTGAGGCTTTAACAAATACTGTGAACTGCTGTCCAAAAAAATTCCTTATAGCAATGTAGTTGTCATCTCAGTTGCTCGACTTCCATATAGGTGTTTTTAGGTTCTGTGTTACTTTCTTAAACCCTTTTTCCGTATTTCAATCGCTGAAGAAAAAAATTTATATCCATCTTCTACTTGTTACTTCTTGAAATGGAGGAAACTTTTGTCCCATTTCGAGGTATCAAGAACGATTTGAAAGGAAGATTACTGTGTTACAAGCAAGACTGGACTGGTGGCTTCACTGCAGGATACAGAATTCTTGCTCCCACAACTTACATATTCTTTGCATCAGCCATTCCCGTGATATCATTTGGAGAGCAACTGCACAGGAGTACAGATGGCATCCTGACTGGAGCTCAGACCTTGGCTTCCACTGCCATCTGTGGAATCGTACATTCAATTTTTGGAGGTCAACCGTTGCTAATTCTTGGAGTGGCTGAGCCAACTGTAATTATGTATACATTCATGTATAATTTTGCCAAAGGCAGAGCAGATTTGGGCCCAAAATTGTTTTTGGCTTGGGCAGCATGGGTATGTGTCTGGACATCATTCTTGTTGATCTTGTTTGCAATCCTGGGTGCATGCTCAATTATTAACAGATTTACCCGCATAGCTGGTGAACTTTTTGGTATGCTGATTGCGATGCTCTTCATGCAACAGGCAATAACTGGTGCTGTGGATGAATTCCGTATTCCTCACGGGGAAGATCCAAAACTTGCTCAGTTCCAACCCTCATGGCGTTTTGGAAATGGGATGTTTGCACTAGTTCTCACATTTGCGCTCCTTTTCACTGGGCTAAGGAGCCGCAAAGCACGATGTTGGCGTTATGGGACAGGGTGGTTACGAGGTCTTGTTGCTGACTATGGGGTGCCATTGATGGTGCTTGTCTGGACTGGAATAGCATATGCACCAGGAAGCAATGTACCAAGTGCAATTCCTAGACGTCTTGCTACTCCTAATCCATGGTCACATGGTGCTTATTCCAACTGGACAGTTTTTAAGGAAATGCTTGATGTGCCATTGTTATACATTTTTGGAGCTTTCATTCCGGCGACAATGATTGCAGTGCTTTATTATTTTGATCACAGCGTTGCATCCCAACTTGCCCAACAAAAGGAATTCAACTTAAGAAAACCTTCTTCATACCATTATGACTTACTTCTCTTAGGATTTTTGACTATTTTATGTGGTCTTGTTGGCATACCTCCTTCAAACGGTGTTATTCCTCAATCTCCGATGCACACGAAAAGCTTAGCTACTCTCAAACATCAGTTGGTGCGTAGCAAGTTAGTGACAACAGTCCGGAAAAGTATGCAGAAAAATTCAACCTTAGGGCAATTATACGGAAACATGCAAGAAGCCTATGAGCAAATGCAGACCCCACTGGTTTATCAGCCTCCACCTGCCTTGGCACTTAAGGAATTGAAAGAGACCACAATTCAGTTGGCCGCAAGTACTGGGCATATGGATGCCCCAGTTGATGAATCAATTTTTAATGTTGACAAGGACGTGGATGACCTGCTTCCTGTTGAGGTGAAAGAACAGCGATTGAGTAATTTGTTGCAATCTCTGATGGTGGTTGGCTGCCTTGCAGCAATGCCCATCATTAGAAAGATCCCAACTTCTGTGCTTTGGGGTTATTTTGCTTTCATGGCCATAGAGAGTTTGCCAGGAAATCAATTTTGGGAAAGGATATTGTTTCTTTTCACTGCTCCAAGCCGTAGATACAAAGTACTTCAGGATTATCATGCTACATTTCTTGAAACGGTGCCTTTCAAGACAATTGCCACTTTCACCATTTTCCAGACATGTTATTTGCTGGCATGTTTTGGTATCACATGGGTGCCTATAGCTGGTGTTCTCTTCCCACTACTGATCATGTTGTTAGTCCCAGCGAGGCAGTATATCCTTCCCAAGTTTTTCAAAGGAGCACATCTTCAAGAATTGGATGCAGCAGAGTATGAAGAAGCCCCTGGAATGCCATGCAATATAACAGAAGCTGGAATTCAGGGATTCGAACTAGGAAGCATGGGGACAGGTGCAAATGATGGCGAAGTTTTGGATGAGATGATTACACGAAGTCGCGGTGAGGTCAAACACACATATAGTCCACGGATAACTAGCTCGAGTGATTGCACACCAATTCATGAATCCAAGTCTGCATTAAGTCCCCGAATTGTAGAAGCTAAACAAATATATAGCCCCCGTATAAGTGAGCTCAGACAGACACATAGCCCTCACAGAGGGGAAAAGCATTCGGGCATTCCCCTGGTTAGTCAAGGAAAAAATACGAGTCCAAGTGCATCTGGTTTGAGGCCACATAAACCAACTTCCAATTAGGTGTTTGGAGTCTAAATCCTTGGCCAGTAATCTTTCCCTTCAGTGAGCATATCTTATGTTGAATAGTACATATTTTGTTGGCTTATCTTTATTTAATCATTGTGCCATAAATCACTCAGTTGTATTTGGTGTGTCTTCACAAAGAACCCCTGTCCATCTCAGACGAGAGGGTAGACCATATAGTGCGTGTAAAACAATGTAATGGAAGTCGAGCTTGAAGTATTTCAGTTTTCTTGTAGCATGAAATCTATTATGTCAGTCTTGTGGTTCTGTAGACCCTGGGCATGCCAAATAAGCATGGTGGTATTAAAGGGTCCTGTGAGTGGTTTGAGCTTCATACAAAGTCATCCTTCTTCTACCAGCTGGATCTTAACCACAAAGTTTGCAGCCTTTAATGTTTCATTGAAATAAAAAAATGTGGAAATTAAACTTGACAAATGAAAGGGCAATGGTAAGGCTTACAATATTTGAACTTCTGTACATGTTTAGCCATTACCTTTCAAAACTAACCAAGGGCAATGTCAAATGAGCAAGGATATGTTGAGATGGAAATATCTATTTTTCAGGACAGTAAAACATTTAGATAAT

Ace file of the UniGene sp_v3.0_unigene2384

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	boron transporter [Citrus macrophylla]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Sma3	Putative uncharacterized protein	-	-	-

Source	Gene names
Sma3	VITISV_025408;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	inorganic anion exchanger activity	GO:0005452	Molecular Function	-
Sma3	anion transport	GO:0006820	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	-
Sma3	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G62270.1	HCO3- transporter family chr3:23042528-23045633 REVERSE LENGTH=703	72%
RefSeq	Arabidopsis thaliana	NP_191786.1	putative boron transporter 2 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002321602.1	anion exchanger family protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: your sequence is longer than subject: 730 - 671

Fln protein: MEETFVPFRGIKNDLKGRLLCYKQDWTGGFTAGYRILAPTTYIFFASAIPVISFGEQLHRSTDGILTGAQTLASTAICGIVHSIFGGQPLLILGVAEPTVIMYTFMYNFAKGRADLGPKLFLAWAAWVCVWTSFLLILFAILGACSIINRFTRIAGELFGMLIAMLFMQQAITGAVDEFRIPHGEDPKLAQFQPSWRFGNGMFALVLTFALLFTGLRSRKARCWRYGTGWLRGLVADYGVPLMVLVWTGIAYAPGSNVPSAIPRRLATPNPWSHGAYSNWTVFKEMLDVPLLYIFGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLVGIPPSNGVIPQSPMHTKSLATLKHQLVRSKLVTTVRKSMQKNSTLGQLYGNMQEAYEQMQTPLVYQPPPALALKELKETTIQLAASTGHMDAPVDESIFNVDKDVDDLLPVEVKEQRLSNLLQSLMVVGCLAAMPIIRKIPTSVLWGYFAFMAIESLPGNQFWERILFLFTAPSRRYKVLQDYHATFLETVPFKTIATFTIFQTCYLLACFGITWVPIAGVLFPLLIMLLVPARQYILPKFFKGAHLQELDAAEYEEAPGMPCNITEAGIQGFELGSMGTGANDGEVLDEMITRSRGEVKHTYSPRITSSSDCTPIHESKSALSPRIVEAKQIYSPRISELRQTHSPHRGEKHSGIPLVSQGKNTSPSASGLRPHKPTSN*

Protein Length: 731

Fln nts: TGTAGATCTGGTGGAAGCTAGTGTGATTGGATAAGTTACAGTGGCTCTCTGTATTGCCATTGCTTCCTACTGGCGTGAATTTTCCAACTTTTAGTTGGTAAACCCATGTAAACTGAGTGCCAGAGCCTTTTCCTGTTTCATGCAGTGAGCTGATACCCTTCTACTGAATCCTTTTCTCTGCCTTGATAAGAACAAGTAAGATATAAGGAATCCATCCTTCGTTTCTCCATGGGGCAGAGTACGTTCGTTGCGCCTTAAATTATCATGTTCTCTGTTGGGTACATGTGAAAAGATTGTCATGGAGACATATAAACTGGCTCCTTAACTTCCCCTGTTATGCCTCAGAATTCAGTAGCTGTGAAACGTTGACTTCTGCATTTTCTTAGAAAAATCAGCATGTAAAACCCACAGCTTTCCAATCTATATGGACTTCATATCCAGTACTTTTGATGGAGTTGGTAAGGAAAATGGATTTTGGACAGAAATCTTCAGTCTGAATCTTATCCCCATCAAAATTGAAGCCTACATCTTTGCCCCTTAATTTCTCTGCATCCATGCCTATGGCATTTGACATGATGGCTTCTCGTTAGTTGCAATCTTAGACAATTTGACATGATGGCTTCTCGTTAGCTGCAGTCTCAGACAGCAGATGTCCAATATAGAGAGTCAAATTCTTGTTGTATGTCTTCAGCTATGGAATCCAAGTAATTCTAGAAAATTCACATACAGTTTTCTGGCTGAATCACACTATGGCTCAGGACATATTTGCTCCCCTTCATCTTTAGTCAGTTTTGTTCCCAAGTGTAAATTTGACCCCAGAATTTCTCTGGAGAAGCTTATTATTTTCTGTATAGAACATGTTTCAGCGGTTAACTTGGTTAGTCATGTTTCTGATCTTTTAGCTTCAGAAACAATATAAAGAGGATATACTTCTGTGGAACAAAATAATACAAAGAGTTCCCTTTGTACAAGGAATACAATTCAGTCTGTAATTATACAGTTTTGTTGAAATATTTTGAGTTTTCAATTTTGATGTCTAGATGGAGATCCAAGTTTTGTCCTGTATCTGATAGAAGAGGCTTTTTAATGCTGCTAATATTGGTCATTTTTTCCCTGTAGTTATTGAGGCTTTAACAAATACTGTGAACTGCTGTCCAAAAAAATTCCTTATAGCAATGTAGTTGTCATCTCAGTTGCTCGACTTCCATATAGGTGTTTTTAGGTTCTGTGTTACTTTCTTAAACCCTTTTTCCGTATTTCAATCGCTGAAGAAAAAAATTTATATCCATCTTCTACTTGTTACTTCTTGAA_-_ATGGAGGAAACTTTTGTCCCATTTCGAGGTATCAAGAACGATTTGAAAGGAAGATTACTGTGTTACAAGCAAGACTGGACTGGTGGCTTCACTGCAGGATACAGAATTCTTGCTCCCACAACTTACATATTCTTTGCATCAGCCATTCCCGTGATATCATTTGGAGAGCAACTGCACAGGAGTACAGATGGCATCCTGACTGGAGCTCAGACCTTGGCTTCCACTGCCATCTGTGGAATCGTACATTCAATTTTTGGAGGTCAACCGTTGCTAATTCTTGGAGTGGCTGAGCCAACTGTAATTATGTATACATTCATGTATAATTTTGCCAAAGGCAGAGCAGATTTGGGCCCAAAATTGTTTTTGGCTTGGGCAGCATGGGTATGTGTCTGGACATCATTCTTGTTGATCTTGTTTGCAATCCTGGGTGCATGCTCAATTATTAACAGATTTACCCGCATAGCTGGTGAACTTTTTGGTATGCTGATTGCGATGCTCTTCATGCAACAGGCAATAACTGGTGCTGTGGATGAATTCCGTATTCCTCACGGGGAAGATCCAAAACTTGCTCAGTTCCAACCCTCATGGCGTTTTGGAAATGGGATGTTTGCACTAGTTCTCACATTTGCGCTCCTTTTCACTGGGCTAAGGAGCCGCAAAGCACGATGTTGGCGTTATGGGACAGGGTGGTTACGAGGTCTTGTTGCTGACTATGGGGTGCCATTGATGGTGCTTGTCTGGACTGGAATAGCATATGCACCAGGAAGCAATGTACCAAGTGCAATTCCTAGACGTCTTGCTACTCCTAATCCATGGTCACATGGTGCTTATTCCAACTGGACAGTTTTTAAGGAAATGCTTGATGTGCCATTGTTATACATTTTTGGAGCTTTCATTCCGGCGACAATGATTGCAGTGCTTTATTATTTTGATCACAGCGTTGCATCCCAACTTGCCCAACAAAAGGAATTCAACTTAAGAAAACCTTCTTCATACCATTATGACTTACTTCTCTTAGGATTTTTGACTATTTTATGTGGTCTTGTTGGCATACCTCCTTCAAACGGTGTTATTCCTCAATCTCCGATGCACACGAAAAGCTTAGCTACTCTCAAACATCAGTTGGTGCGTAGCAAGTTAGTGACAACAGTCCGGAAAAGTATGCAGAAAAATTCAACCTTAGGGCAATTATACGGAAACATGCAAGAAGCCTATGAGCAAATGCAGACCCCACTGGTTTATCAGCCTCCACCTGCCTTGGCACTTAAGGAATTGAAAGAGACCACAATTCAGTTGGCCGCAAGTACTGGGCATATGGATGCCCCAGTTGATGAATCAATTTTTAATGTTGACAAGGACGTGGATGACCTGCTTCCTGTTGAGGTGAAAGAACAGCGATTGAGTAATTTGTTGCAATCTCTGATGGTGGTTGGCTGCCTTGCAGCAATGCCCATCATTAGAAAGATCCCAACTTCTGTGCTTTGGGGTTATTTTGCTTTCATGGCCATAGAGAGTTTGCCAGGAAATCAATTTTGGGAAAGGATATTGTTTCTTTTCACTGCTCCAAGCCGTAGATACAAAGTACTTCAGGATTATCATGCTACATTTCTTGAAACGGTGCCTTTCAAGACAATTGCCACTTTCACCATTTTCCAGACATGTTATTTGCTGGCATGTTTTGGTATCACATGGGTGCCTATAGCTGGTGTTCTCTTCCCACTACTGATCATGTTGTTAGTCCCAGCGAGGCAGTATATCCTTCCCAAGTTTTTCAAAGGAGCACATCTTCAAGAATTGGATGCAGCAGAGTATGAAGAAGCCCCTGGAATGCCATGCAATATAACAGAAGCTGGAATTCAGGGATTCGAACTAGGAAGCATGGGGACAGGTGCAAATGATGGCGAAGTTTTGGATGAGATGATTACACGAAGTCGCGGTGAGGTCAAACACACATATAGTCCACGGATAACTAGCTCGAGTGATTGCACACCAATTCATGAATCCAAGTCTGCATTAAGTCCCCGAATTGTAGAAGCTAAACAAATATATAGCCCCCGTATAAGTGAGCTCAGACAGACACATAGCCCTCACAGAGGGGAAAAGCATTCGGGCATTCCCCTGGTTAGTCAAGGAAAAAATACGAGTCCAAGTGCATCTGGTTTGAGGCCACATAAACCAACTTCCAATTAG___GTGTTTGGAGTCTAAATCCTTGGCCAGTAATCTTTCCCTTCAGTGAGCATATCTTATGTTGAATAGTACATATTTTGTTGGCTTATCTTTATTTAATCATTGTGCCATAAATCACTCAGTTGTATTTGGTGTGTCTTCACAAAGAACCCCTGTCCATCTCAGACGAGAGGGTAGACCATATAGTGCGTGTAAAACAATGTAATGGAAGTCGAGCTTGAAGTATTTCAGTTTTCTTGTAGCATGAAATCTATTATGTCAGTCTTGTGGTTCTGTAGACCCTGGGCATGCCAAATAAGCATGGTGGTATTAAAGGGTCCTGTGAGTGGTTTGAGCTTCATACAAAGTCATCCTTCTTCTACCAGCTGGATCTTAACCACAAAGTTTGCAGCCTTTAATGTTTCATTGAAATAAAAAAATGTGGAAATTAAACTTGACAAATGAAAGGGCAATGGTAAGGCTTACAATATTTGAACTTCTGTACATGTTTAGCCATTACCTTTCAAAACTAACCAAGGGCAATGTCAAATGAGCAAGGATATGTTGAGATGGAAATATCTATTTTTCAGGACAGTAAAACATTTAGATAAT

Fln Alignment:

Contig2384___PFRGIKNDLKGRLLCYKQDWTGGFTAGYRILAPTTYIFFASAIPVISFGEQLHRSTDGILTGAQTLASTAICGIVHSIFGGQPLLILGVAEPTVIMYTFMYNFAKGRADLGPKLFLAWAAWVCVWTSFLLILFAILGACSIINRFTRIAGELFGMLIAMLFMQQAITGAVDEFRIPHGEDPKLAQFQPSWRFGNGMXXXXXXXXXXXXXXRSRKARCWRYGTGWLRGLVADYGVPLMVLVWTGIAYAPGSNVPSAIPRRLATPNPWSHGAYSNWTVFKEMLDVPLLYIFGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDXXXXXXXXXXXXXVGIPPSNGVIPQSPMHTKSLATLKHQLVRSKLVTTVRKSMQKNSTLGQLYGNMQEAYEQMQTPLVYQPPPALALKELKETTIQLAASTGHMDAPVDESIFNVDKDVDDLLPVEVKEQRLSNLLQSLMVVGCLAAMPIIRKIPTSVLWGYFAFMAIESLPGNQFWERILFLFTAPSRRYKVLQDYHATFLETVPFKTIATFTIFQTCYLLACFGITWVPIAGVLFPLLIMLLVPARQYILPKFFKGAHLQELDAAEYEEAPGMPCNITEAGIQGFE---------------LGSMGTGANDGEVLDEMITRSRGEVK
B8LRN9______________PFRGIINDIRGRLPCYKQDWIGGFTAGFRILAPTAYIFFASALPVIAFGEQLGRDTDGTLSAVQTLASTALCGIIHSILGGQPLLILGVAEPTVLMYTYMFNFAKNRSDLGQRLFLAWAGWACVWTSLLLCLLAIFGACSIISRFTRVAGELFGMLIAVLFMQEAIKGVVGEFHVPKQGNPENEVYQFPWLFANGLFGLLLSFGLLITALKSRRARAWRYGTGWLRGFIADYGVPVMILVWSAVSYSASDKVPTGVPRRLFSPNPWAPGASSNWTIIRDMLNVPPMYILAALIPAIMIAGLYFFDHSVASQMAQQKDFNLKNPSAYHYDMLLLGFMVLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQMIRKKMVESAKKSIEEQASTLEIYGNMQEVFVKME----QKGPTSKDLNELKDLKAIVLRS---KEDEKDGNAFDPEKHIEACLPVRVKEQRLSNLMQSLLVGGSVGLMPVIKKIPTSVLWGYFAYMAIESLPGNQFWERLLLLFIAPTRRYKVLEDLHASFVETVPFKTIALFTIFQFIYLLSCFGVTWIPIAGILFPIPFFLLIPIRQYILPKIFESKYMSELDAAEYEESAAFPRRDLSLSIRELDTPRTPRTPRTPRINRVDSIKEIIGDAEILDELTTRSRGELK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
3241	85		14		0.993533
3339			20	80	0.995493
3383	80		20		0.995493
3644	75	25			0.996473
3745		25		75	0.996473
3822	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain