SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2366

Length: 2086 nt

UniGene Fasta

>sp_v3.0_unigene2366
GATCAACTCATTGATAGAAGTTTACTGTGACAATTGTTTCTTTGCTGGCCACTGTGATATGAGATGGGGAACCTGCTCTCCAGCCTGCTCTCTAGCCTGCAACACACCCGAGAAACTCAACAGCAACCGGAAAACATAATTAGCAATGCTGAAGTAGTACGAGAAGTAGTAGTACAAGAAGTAGGAGCTGAAGTGGGTTTGAACGATGGTGAAATGGGGACATCCTCCGATAGTCTAAATGCTTTCCAATCAGACAACAGAGAGACCCAGATGGAAAAGGAAGCAGCTGCTGCAGTCAAATTGCAAAAAGTGTATAGGAGCTACAGAACAAGGCGAAATCTCGCAGACTGTGCAGTATTGGCCGAGGAATACTGGTGGCAAGCAATAGAATATGCAACACTGACGCAAAGCACAGAATTATTTTATGATGATGATAAACCAGACACTGCTGTTTCACGCTGGTCACGTGCAATGGTGAAGGCTGCAAAAGTTGGAAAGGGATTATCCAAGGATGAGAAAGCCAAACGACTAGCCTTCCAGCATTGGCTTGAGGCTATTGATCCACGACATCGTTATGGGCATAACTTGCATTACTATTATGATGAATGGTATAGAAAACCAACAGCACAGCCATTTTTCTATTGGCTTGACGTTGGAGATGGCAGGGATCTTAATCTTGTTGAATGCCCAAGGTCAATCTTGCAAAAGCAACGAATTAAATACCTTAGCCCAAGCGAAAGGGAGCGATATGAAGTTGTGATAAATGATGGTAAAATTGTGTACAAGCAAAATGAACAGCCAGTTCACACACCTGAAGGTTCTAAGTGGATATTTGTGTTGAGCACATCTCAGAACCTCTATGTTGGCGAGAAAAAAAAAGGGAGATTTCAACATTCTAGCTTCTTATCTGGGGCAGCTACTTCAGCAGCTGGGAGATTGATTGTTGATAATGGAATTCTCAAGGCTATTTCACCATACAGCGGACACTACCTTCCAACAGAGGAAAACCTTGACACCTTCGTCAGATTTCTTGTCAAAAATGGTGTCGACATGACTAATGTGGAGAGGAAATCAAACGATGGGGATCTATCAAATGAATTTGAAAAGGATATCATAACGGAGAGTGGGTTGAACTCAAAAGAGGACAGAAAAGGGCAGGTTCATTGTGAGAAACAGGAAGATAACACTATTCATAGAGCACACATCGCAAGTAATGTGCTGCATGCAAAAATAAAAAATGTCTCTGAACTACAACTTAATGTGGAAAAAGAAGCCCCCGATGCCAAGACTGACATTTGTCTCACATCTCATGATTTGGTGCATGAAAATGGAATGGCCAGTGTCAAGAAGCATGAACAGTTCCAAGATCCTAAAGAGAGCGCAGAAGCTGAGGGTAATGGAGAAATAAGAGAAATACATGTCCGACAAGAAAGCAAAAAGAATGTGTATTATAAAAAGAGTCTTTCAAGCAAGGACCTTGAAAATCAACTACCAGAACTTCCTTGTAAAGAATGGCTTCAAAGCTCTAAAAAACCATCAGAACCCTATCAGCTTGGCAAGCGGTCATCTGGTAAATGGACAACAGAAACTGGTCTTCGTATTGGCTTTGTTGCAGCTTATCCTGTAGAACTTCGTTTTGAGGCACTAAAGCAAGTAAATCTATCACCTAGGATCACGTCCCCTTATACTCCAAAAGGTAAACCTTTGACTAGTTGATATTTGTTCTGAACATCTTAGAAGACTCAATCCACTCCTGATAAAGGTTCGAAATGTTTCCTGTATATATAACTCCAATTTGTGTTTCTGGCATCTGTTAATTAAAACAAGGGTGGATTGGTTATTTATTTCTGTTCTGTATGTGATCGGTGTAAAATTTTAACCTCAAATGAGTTATAACTTGGTGACTCCATATGGTATGTCGTAAAATCTGGAGAGCATCCAATGTGTAAAGTAAAACTCTTGTTAAATTATAATATGCAGATGTATAGTACTGGAGACTTGACAAAAAGGCGGCTAATTTCGTAATGCTTTATCACGTCAGTTCTTTTCCATGCTAAAAGAAATTGAAAGAACGCCAGATGGCACA

Ace file of the UniGene sp_v3.0_unigene2366

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9T1E0_RICCO	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Calmodulin binding protein, putative	-	-	1.323e-17	-

Source	Gene names
Sma3	AT4g33050; At2g26190; At3g13600; At3g52870; At3g58480; At4g33050; B1114B07.32-1; CAM; F14P22.70; F26P21.170; F8J2_40; GSVIVT00016534001; GSVIVT00021647001; GSVIVT00024780001; GSVIVT00025453001; GSVIVT00032188001; GSVIVT00034127001; GSVIVT00034409001; GSVI

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	polar nucleus fusion	GO:0010197	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	FAR1 DNA binding domain	IPR004330	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13600.1	calmodulin-binding family protein chr3:4445102-4447383 FORWARD LENGTH=605	46%
RefSeq	Arabidopsis thaliana	NP_187969.1	calmodulin-binding protein-like protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002299112.1	predicted protein, partial [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA39

Fln msg: your sequence is shorter than subject: 551 - 581

Fln protein: MGNLLSSLLSSLQHTRETQQQPENIISNAEVVREVVVQEVGAEVGLNDGEMGTSSDSLNAFQSDNRETQMEKEAAAAVKLQKVYRSYRTRRNLADCAVLAEEYWWQAIEYATLTQSTELFYDDDKPDTAVSRWSRAMVKAAKVGKGLSKDEKAKRLAFQHWLEAIDPRHRYGHNLHYYYDEWYRKPTAQPFFYWLDVGDGRDLNLVECPRSILQKQRIKYLSPSERERYEVVINDGKIVYKQNEQPVHTPEGSKWIFVLSTSQNLYVGEKKKGRFQHSSFLSGAATSAAGRLIVDNGILKAISPYSGHYLPTEENLDTFVRFLVKNGVDMTNVERKSNDGDLSNEFEKDIITESGLNSKEDRKGQVHCEKQEDNTIHRAHIASNVLHAKIKNVSELQLNVEKEAPDAKTDICLTSHDLVHENGMASVKKHEQFQDPKESAEAEGNGEIREIHVRQESKKNVYYKKSLSSKDLENQLPELPCKEWLQSSKKPSEPYQLGKRSSGKWTTETGLRIGFVAAYPVELRFEALKQVNLSPRITSPYTPKGKPLTS*

Protein Length: 552

Fln nts: GATCAACTCATTGATAGAAGTTTACTGTGACAATTGTTTCTTTGCTGGCCACTGTGATATGAG_-_ATGGGGAACCTGCTCTCCAGCCTGCTCTCTAGCCTGCAACACACCCGAGAAACTCAACAGCAACCGGAAAACATAATTAGCAATGCTGAAGTAGTACGAGAAGTAGTAGTACAAGAAGTAGGAGCTGAAGTGGGTTTGAACGATGGTGAAATGGGGACATCCTCCGATAGTCTAAATGCTTTCCAATCAGACAACAGAGAGACCCAGATGGAAAAGGAAGCAGCTGCTGCAGTCAAATTGCAAAAAGTGTATAGGAGCTACAGAACAAGGCGAAATCTCGCAGACTGTGCAGTATTGGCCGAGGAATACTGGTGGCAAGCAATAGAATATGCAACACTGACGCAAAGCACAGAATTATTTTATGATGATGATAAACCAGACACTGCTGTTTCACGCTGGTCACGTGCAATGGTGAAGGCTGCAAAAGTTGGAAAGGGATTATCCAAGGATGAGAAAGCCAAACGACTAGCCTTCCAGCATTGGCTTGAGGCTATTGATCCACGACATCGTTATGGGCATAACTTGCATTACTATTATGATGAATGGTATAGAAAACCAACAGCACAGCCATTTTTCTATTGGCTTGACGTTGGAGATGGCAGGGATCTTAATCTTGTTGAATGCCCAAGGTCAATCTTGCAAAAGCAACGAATTAAATACCTTAGCCCAAGCGAAAGGGAGCGATATGAAGTTGTGATAAATGATGGTAAAATTGTGTACAAGCAAAATGAACAGCCAGTTCACACACCTGAAGGTTCTAAGTGGATATTTGTGTTGAGCACATCTCAGAACCTCTATGTTGGCGAGAAAAAAAAAGGGAGATTTCAACATTCTAGCTTCTTATCTGGGGCAGCTACTTCAGCAGCTGGGAGATTGATTGTTGATAATGGAATTCTCAAGGCTATTTCACCATACAGCGGACACTACCTTCCAACAGAGGAAAACCTTGACACCTTCGTCAGATTTCTTGTCAAAAATGGTGTCGACATGACTAATGTGGAGAGGAAATCAAACGATGGGGATCTATCAAATGAATTTGAAAAGGATATCATAACGGAGAGTGGGTTGAACTCAAAAGAGGACAGAAAAGGGCAGGTTCATTGTGAGAAACAGGAAGATAACACTATTCATAGAGCACACATCGCAAGTAATGTGCTGCATGCAAAAATAAAAAATGTCTCTGAACTACAACTTAATGTGGAAAAAGAAGCCCCCGATGCCAAGACTGACATTTGTCTCACATCTCATGATTTGGTGCATGAAAATGGAATGGCCAGTGTCAAGAAGCATGAACAGTTCCAAGATCCTAAAGAGAGCGCAGAAGCTGAGGGTAATGGAGAAATAAGAGAAATACATGTCCGACAAGAAAGCAAAAAGAATGTGTATTATAAAAAGAGTCTTTCAAGCAAGGACCTTGAAAATCAACTACCAGAACTTCCTTGTAAAGAATGGCTTCAAAGCTCTAAAAAACCATCAGAACCCTATCAGCTTGGCAAGCGGTCATCTGGTAAATGGACAACAGAAACTGGTCTTCGTATTGGCTTTGTTGCAGCTTATCCTGTAGAACTTCGTTTTGAGGCACTAAAGCAAGTAAATCTATCACCTAGGATCACGTCCCCTTATACTCCAAAAGGTAAACCTTTGACTAGTTGA___TATTTGTTCTGAACATCTTAGAAGACTCAATCCACTCCTGATAAAGGTTCGAAATGTTTCCTGTATATATAACTCCAATTTGTGTTTCTGGCATCTGTTAATTAAAACAAGGGTGGATTGGTTATTTATTTCTGTTCTGTATGTGATCGGTGTAAAATTTTAACCTCAAATGAGTTATAACTTGGTGACTCCATATGGTATGTCGTAAAATCTGGAGAGCATCCAATGTGTAAAGTAAAACTCTTGTTAAATTATAATATGCAGATGTATAGTACTGGAGACTTGACAAAAAGGCGGCTAATTTCGTAATGCTTTATCACGTCAGTTCTTTTCCATGCTAAAAGAAATTGAAAGAACGCCAGATGGCACA

Fln Alignment:

Contig2366___MGNXXXXXXXXXQHTRETQQQPENIISNAXXXXXXXXXXXXXXXGLNDGEMGTSSDSLN-----------------------------------------AFQSDNRETQMEKEAAAAVKLQKVYRSYRTRRNLADCAVLAEEYWWQAIEYATLTQSTELFYDDDKPDTAVSRWSRAMVKAAKVGKGLSKDEKAKRLAFQHWLEAIDPRHRYGHNLHYYYDEWYRKPTAQPFFYWLDVGDGRDLNLVECPRSILQKQRIKYLSPSERERYEVVINDGKIVYKQNEQPVHTPEGSKWIFVLSTSQNLYVGEKKKGRFQHSSFLSGAATSAAGRLIVDNGILKAISPYSGHYLPTEENLDTFVRFLVKNGVDMTNVERKSNDGDLSNEFEK-DIITESGLNSKEDRKGQVHCEKQEDNTIHRAHIASNVLHAKIKNVSELQLNVEKEAPDAKTDICLTSHDLVHENGMASVKKHEQFQDPKESAEAEGNGEIREIHVRQESKKNVYYKKSLSSKDLENQLPELPCKEWLQ--SSKKPSEPYQLGKRSSGKWTTETGLRIGFVAAYPVELRFEALKQVNLSPRITSPYTPKGK
D5AA39______________MGNLLSSLLSSLQQTREAQQQAENRINDSEAVREVVVQEVGAELGLKDAETGTSSDCSNDFKPNNGDTEMGKVREVVVQEVVAEVGLKDVGTRTSSDCSNVFKSNDREAEMGKEAAAAVKLQKVYRSYRTRRNLADCAVVAEELWWQAIEFATVKA--------DKPDTAVSRWSRATVKAAKVGKGLSKDEKGKRLAFQHWLEAIDPRHRYGHNLHYYYDEWYKKETAQPFFYWLDVGDGRDLNLEDCPRSTLQKQRIKYLSPSEREQYEVVINNGKIVYKQNQQPVDTFEGSKWIFVLSTSHNLYVGEKKKGRFQHSSFLAGAAASAAGRLTVDKGILKSISPYSGHYLPTEENLDTFIRFLDENGVDMTNVERRTSDEDQSNEFEKEDITTQSRLNSKGDREEQVHREKQEENTIHREHIASNVLHAENENVTVLQPNVENEA--TKTDIYFTSHDLVHENGKANVKKHEQFQGPEESSEAEGNGEIRETHDRQESKEKVYYKKSLSSKDLENQLQELPCKEWLQRLNSRKPSESYQVGKLPSGKWTTGTGLRIGCVAVYPVELRFEALKQVNLSPRVTSPYFPKGQ

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
149		66	33		0.997452
242		66		33	0.997452
340	33	66			1.0
900	10	90			0.90298
924	44		55		1.0
1038	90			10	0.90298
1039	90		10		0.90298
1040	90			10	0.90298
1047		90		10	0.90298
1069	87		12		0.992554
1070	87		12		0.992554
1088	10			90	0.90298
1091		90	10		0.90298
1092	90			10	0.90298
1143			44	55	1.0
1324	50		50		1.0
1359	50		50		1.0
1390	50		50		1.0
1436	33			66	1.0
1699	80	20			0.999996
1711	80		20		0.999996
1814		10		90	0.90298
1907	10	90			0.90298
1909	90	10			0.90298
1940	77	22			0.999999
1949	88			11	0.923564
1953	22			77	0.999999
1954	22	77			0.999999
1956	88		11		0.923564
1957		22	77		0.999999
1991		66	33		1.0
1993			50	50	1.0
2002	40	40	20		1.0
2004	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain