SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2331

Length: 2004 nt

UniGene Fasta

>sp_v3.0_unigene2331
CAGGGGCTTGGTGTTTTGTAGCATTTCAAGGTTTTCATTCATTGAAGGAATTAGTGTCGGTCAGGGTTTCAAAACACAGGCGCTTAGTATTTCGAATGCATTGCAAGGATAAGGTCAGCTTCAATGAAGGAACCATGTTTGCGTCACAGCTTCCTCCTTTTAACATGCGCGCACTCTAGCGATTTGGTGATATCATCGTGCAGATCAATTTTTGGCCATATGTTTCAGCAGCCATTATCACAGAATAATTCGACAGTTCAAGGTTTAATACTTTCTTCCAAATCTTTCAGAAAATTTAACGTCTAAAGGGAGACAAAATCTTGTGCTTCCCCGAAGTTGCAGGTGTTTGAAGAGGGGAGCTGCTTGATGGAGGCATCGCCTAAGTTTATTTTATGAGAACTTCAATGTCAATGAATCAGGGTAGCAACTTGTATCATGAGCACATTTGTTAGTTTAGTTGTTCAAAAGTGACAGCCATAATGGCATCCATCAATCGCAGTGGAGTTGTGATGAAGCCAAATGAGACTCTGAGGCTTATTCTTACTGCAGTTTTTGGAATTGTGTTTGGATTTTTTATTGGCGCTTCCTTGCCAAGTATTGGCCTTTCAAAGATCAGCATTCCGTCTTTGCTATCCACAATTGAACTTCCATTTCACGAGGACAGGAATTCAGGCTTAGCTACTCAAGTTATGTTGAATTATGCATGGGCTTCTAAGTCTGGTGCAAAGGTCAATGACTCTACATCAGATTCTAGAACTAAGAACAGATCCAAGATATATGTACCGACAAACCCTCGTGGAGCAGAAACACTGCCCCCTGGCATTGTTGTCTCAGAGACAGATCTATATCTCCGTAGATTGTGGGGTAAGCCTAGTGAGGACTTAGTGTTCAAGCAAAAGTACCTTGTGACTTTCACAGTTGGTTTCGCACAGAGGGAAATGGTTAACAGTGCAGTTTCAAAGTTCTCTGAAAATTTCACCATTCTACTTTTTCATTATGATGGGAAGACCAGTGAATGGGATCAATATGAGTGGTCGAAGCGTGCAATTCATGTCAGTGCAAGAAAACAAACAAAATGGTGGTTTGCGAAGCGTTTCCTTCACCCAGATGTTGTGGCACCTTTTGATTATATCTTCATCTGGGATGAAGATTTAGGAGTTCAGCACTTTAATGCAGAAAAATACCTAGCACTTGTGAGGAAGCATGGTTTGGAGATATCACAACCTGGTTTGGAGCCAAATAGGGGCCTGACGTGGCAAATGACGAAAAGGAGGGGTGATTCTGAAGTCCATAAAGTAACACAGGAGAGACCAGGTTGGTGCAGTGACCCCCATCTACCACCATGTGCAGCATTTGTTGAGATAATGGCTCCTGTATTTTCTCGAAAAGCATGGCAATGTGTTTGGCATATGATTCAGAATGATTTGGTTCATGGATGGGGTTTAGACTTCGCCTTGCGAAAGTGTGTAGAGCCCGCACATGAGAAAATTGGAGTTGTTGATTCCCAATGGATTGTCCATAATGTTGTACCTTCACTGGGAAGTCAGGGTGAATCTAATAATGGCAAAGCACCTTGGGAAGGGGTTAGGGAGAGATGTAGGTATGAATGGGGACTCTTCCAAGGTCGTATGAAGAAGGCAGAAAAGGAGTACCTGGCAGAAAAAAGTGTAGTAGTCTGATTTTGGCAATCCATGTTCGTATGTTTATAGCAAATCAGATCAAGTGTTTCACCATTTGTTTACGGTTTGTAAACACAATATTCTAATACCTTAGAGCCACTTCCCTTAAGTGACTATCCTTTCCCGATCAATGTTAATAGCTTTTTTTGTATGGTAGAATTTCGTTTAAAAAATATTTGGATGAAAATTTGCATTGTTCTAGTTGTTAATGGAAGCCATTGACAGGATTTGAGAGTATGTGATCCTGCCATTTTTAATGATGATTATAGTGGCCTAAATTATTTGAAAATCTATGAAGTAAATTTTCTGCTCTGTTAATTGCATC

Ace file of the UniGene sp_v3.0_unigene2331

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lysine ketoglutarate reductase trans-splicing related 1 n=3 Tax=Andropogoneae RepID=B6TPP1_MAIZE	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF707	IPR007877	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08040.1	Protein of unknown function (DUF707) chr1:2495507-2497973 REVERSE LENGTH=382	66%
RefSeq	Arabidopsis thaliana	NP_001030994.1	uncharacterized protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002323994.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLC3

Fln msg:

Fln protein: MASINRSGVVMKPNETLRLILTAVFGIVFGFFIGASLPSIGLSKISIPSLLSTIELPFHEDRNSGLATQVMLNYAWASKSGAKVNDSTSDSRTKNRSKIYVPTNPRGAETLPPGIVVSETDLYLRRLWGKPSEDLVFKQKYLVTFTVGFAQREMVNSAVSKFSENFTILLFHYDGKTSEWDQYEWSKRAIHVSARKQTKWWFAKRFLHPDVVAPFDYIFIWDEDLGVQHFNAEKYLALVRKHGLEISQPGLEPNRGLTWQMTKRRGDSEVHKVTQERPGWCSDPHLPPCAAFVEIMAPVFSRKAWQCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHNVVPSLGSQGESNNGKAPWEGVRERCRYEWGLFQGRMKKAEKEYLAEKSVVV*

Protein Length: 401

Fln nts: CAGGGGCTTGGTGTTTTGTAGCATTTCAAGGTTTTCATTCATTGAAGGAATTAGTGTCGGTCAGGGTTTCAAAACACAGGCGCTTAGTATTTCGAATGCATTGCAAGGATAAGGTCAGCTTCAATGAAGGAACCATGTTTGCGTCACAGCTTCCTCCTTTTAACATGCGCGCACTCTAGCGATTTGGTGATATCATCGTGCAGATCAATTTTTGGCCATATGTTTCAGCAGCCATTATCACAGAATAATTCGACAGTTCAAGGTTTAATACTTTCTTCCAAATCTTTCAGAAAATTTAACGTCTAAAGGGAGACAAAATCTTGTGCTTCCCCGAAGTTGCAGGTGTTTGAAGAGGGGAGCTGCTTGATGGAGGCATCGCCTAAGTTTATTTTATGAGAACTTCAATGTCAATGAATCAGGGTAGCAACTTGTATCATGAGCACATTTGTTAGTTTAGTTGTTCAAAAGTGACAGCCATA_-_ATGGCATCCATCAATCGCAGTGGAGTTGTGATGAAGCCAAATGAGACTCTGAGGCTTATTCTTACTGCAGTTTTTGGAATTGTGTTTGGATTTTTTATTGGCGCTTCCTTGCCAAGTATTGGCCTTTCAAAGATCAGCATTCCGTCTTTGCTATCCACAATTGAACTTCCATTTCACGAGGACAGGAATTCAGGCTTAGCTACTCAAGTTATGTTGAATTATGCATGGGCTTCTAAGTCTGGTGCAAAGGTCAATGACTCTACATCAGATTCTAGAACTAAGAACAGATCCAAGATATATGTACCGACAAACCCTCGTGGAGCAGAAACACTGCCCCCTGGCATTGTTGTCTCAGAGACAGATCTATATCTCCGTAGATTGTGGGGTAAGCCTAGTGAGGACTTAGTGTTCAAGCAAAAGTACCTTGTGACTTTCACAGTTGGTTTCGCACAGAGGGAAATGGTTAACAGTGCAGTTTCAAAGTTCTCTGAAAATTTCACCATTCTACTTTTTCATTATGATGGGAAGACCAGTGAATGGGATCAATATGAGTGGTCGAAGCGTGCAATTCATGTCAGTGCAAGAAAACAAACAAAATGGTGGTTTGCGAAGCGTTTCCTTCACCCAGATGTTGTGGCACCTTTTGATTATATCTTCATCTGGGATGAAGATTTAGGAGTTCAGCACTTTAATGCAGAAAAATACCTAGCACTTGTGAGGAAGCATGGTTTGGAGATATCACAACCTGGTTTGGAGCCAAATAGGGGCCTGACGTGGCAAATGACGAAAAGGAGGGGTGATTCTGAAGTCCATAAAGTAACACAGGAGAGACCAGGTTGGTGCAGTGACCCCCATCTACCACCATGTGCAGCATTTGTTGAGATAATGGCTCCTGTATTTTCTCGAAAAGCATGGCAATGTGTTTGGCATATGATTCAGAATGATTTGGTTCATGGATGGGGTTTAGACTTCGCCTTGCGAAAGTGTGTAGAGCCCGCACATGAGAAAATTGGAGTTGTTGATTCCCAATGGATTGTCCATAATGTTGTACCTTCACTGGGAAGTCAGGGTGAATCTAATAATGGCAAAGCACCTTGGGAAGGGGTTAGGGAGAGATGTAGGTATGAATGGGGACTCTTCCAAGGTCGTATGAAGAAGGCAGAAAAGGAGTACCTGGCAGAAAAAAGTGTAGTAGTCTGA___TTTTGGCAATCCATGTTCGTATGTTTATAGCAAATCAGATCAAGTGTTTCACCATTTGTTTACGGTTTGTAAACACAATATTCTAATACCTTAGAGCCACTTCCCTTAAGTGACTATCCTTTCCCGATCAATGTTAATAGCTTTTTTTGTATGGTAGAATTTCGTTTAAAAAATATTTGGATGAAAATTTGCATTGTTCTAGTTGTTAATGGAAGCCATTGACAGGATTTGAGAGTATGTGATCCTGCCATTTTTAATGATGATTATAGTGGCCTAAATTATTTGAAAATCTATGAAGTAAATTTTCTGCTCTGTTAATTGCATC

Fln Alignment:

Contig2331___MASINRSGVVMKPNETLRLILTAXXXXXXXXXXXASLPSIGLSKISIPSLLSTIELPFHEDRNSGLATQVMLNYAWASKSGAKVNDSTSDSRTKNRSKIYVPTNPRGAETLPPGIVVSETDLYLRRLWGKPSEDLVFKQKYLVTFTVGFAQREMVNSAVSKFSENFTILLFHYDGKTSEWDQYEWSKRAIHVSARKQTKWWFAKRFLHPDVVAPFDYIFIWDEDLGVQHFNAEKYLALVRKHGLEISQPGLEPNRGLTWQMTKRRGDSEVHKVTQERPGWCSDPHLPPCAAFVEIMAPVFSRKAWQCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHNVVPSLGSQGESNNGKAPWEGVRERCRYEWGLFQGRMKKAEKEYLAEKS
B8LLC3______________MATTNRSGAVMKPNETLRLILTAVFGIVFGFFIGASLPSIGLSKINFPSLLSTIELPFHEDRNSGLATQVMLNYAWASKSGTKFNSSTSDSRAKNSSKIYVPTNPRGAETLPPGIVVSETDLYLRRLWGKPSEDIVFKQKYLVTFTVGFQQREMVNSAVSKFSKNFTILLFHYDGRTSEWDQFEWSKRAIHISAKKQTKWWFAKRFLHPDVVAPFDYIFIWDEDLGVEHFDAEKYLGLVRKHGLEISQPGLEPNRGLTWQMTKRRGDSEVHKETQERPGWCSDPHLPPCAAFVEIMAPVFSRKAWQCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHNVVPSLGNQGESNNGKAPWEGVRERCRYEWGLFQGRLNKAEKEYLAKKA

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
341	83			16	0.994512
376		50		50	1.0
418	71		28		1.0
581		85		14	0.993533
636	88		11		0.923564
662		20		80	0.999996
695	20		80		0.999996
1347	12		87		0.992554
1611	11		88		0.999937
1712	46	53			1.0
1805	46		53		1.0
1828			90	10	0.90298
1829			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain