SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2294

Length: 2524 nt

UniGene Fasta

>sp_v3.0_unigene2294
GCTGGATCTCGTCAAGAAAGAAGTTGCTGTATCGCGGTCCCTCCGCGGACACCCAAATGTGGTCACTCTTCATGCGCAGACTGTCTATGATCTGGGCCGAACTAAAGAATGCTTTCTGGTCATGGAGTTCTGCGAGAAGGCTCTGGTCAATGTTCTGGAAAGCAGAGCCGCCGCCTACTTCGAAGAGAAACAGATTCTTCTCATGTTTCGTGATGTCTGCAATGCTGTCTACGCGATGCATTGCCAAATGCCCCCAATTGCACACAGGGATCTGAAAGCTGAAAATGTTTTAATGGGTGCTGATGGTGTATGGAAGTTATGTGATTTTGGTAGCACTTCTACAAATCACAAGCGATTTGAGAGGCCCGAGGAGATGGGAATTGAAGAAGACATCATTAGAAAACACACAACTCCAGCTTACAGAGCACCTGAGATGTGGGATCTCTACAGAAGAGAGCTAATAAGTGAAAAGGTTGATATCTGGGCCCTTGGGTGTCTACTTTACAGGATAGCTTATTTAAAGTCTGCTTTTGACGGTGAATCGAAGCTACAAATATTGAATGGGAACTACCGCATTCCCGAGTTACCAAGATACAGTTCTTCATTGGTTGAATTGATCAAGGACATGCTCACAGCTGCTCCAGAAGTCAGACCCGATATCATGCAGGCAAGGGCTTTGCTTGATTGGCCCCCTCATCTCACTGAAACTAGATATGGCGCCGTGTAAATGAACTTCTACCAGTTGAGTTGCGTAAATCAAGTCCAGATAGACCATTATCTATGGCTAATTCTGAGGTACATGCTCCTCCTATGGACGCCCAAGATCATGGTAATCCTGTGCCAACAAGGCGAGCTCCTCCACTCCCATCTAGAACACCACCACCTCCACCTACATCAAAAGACCAAGATCGTCAGTCACCACCTATGGGACAACCAGATTTAAAGGCAATACAAGGTGGTGTTAGTAGTGGGAGCTCTTTAGGAGCATTTTGGTCAAGTCAGTATGCACAGGAATCTGTGCCCGTGGATGACAAAGGCCCTGTGTTTGATAAGGATCCTGGGAGTGAAAGTGTATTCAAGCAGCGGTCACAAAGCCCTGAAAGTCATCCAAAACAAGGCATTTTAAGTTCACCAAAGGAAAATCAGTCCAGAGCTGGACACATTTTGAAAAGCGGTATGTCAAACTTTATGAAGAAGGTGCATGCCTCACCACAACCTACAACACGGCAGGGATATGATGAAATGAATTCAGATATAAACCAGATAAGGCTTAGCTCTGAGGATACTGACCATGGGGATGAAAACACAATCGACTCTGGTGTATCTCCAGTGAAGGCTTCAGCTTCAGAAATTGGTGGGCCATTTCATGACGATTCATTTAATGCATTTGTTGCAGACTTTGATAACCATAAGCCCACCACTGGAACTAATGTGTTTGGCAAAGAAAGTTTACAAGTAGAAGTGGACAGATTGAAAGAAGAGCTGGAGCAGGTGCGCTTAGAAAAGGCAGAAATCACATCAAAGTATGAAAAATTGACAGCTATCTGCCGTTCTCAAAGGCAAGAGATACAAGAGTTAAAACAGACCTTGTCTACAGCAACTGCTCCGAACTTCACCACATTCAGTAAAGAAGGTAGCACAAAGCCAGTTGTACCCCAACAGGCACAAGTGCAACAGCTGAAACAACAGCAAAAACAGCGGTTGGTACCTGGAAGCTGGCACCCAGGCAACAAGCAAGAAGACAAGACAGAGGGATCTATTTGGGAACTGCAGGAAGGTATGTCTACTATGTCCTCCCATGGCGTGCCCTTCAAGGCCACTGATGCGAAGGAATGGCAACCATTTGGTGAATCACTGACCACAAAGTTGTCAAATTCTCCCCCATCCAATGTGTCTGGAGCCTCAAATGGTTACCGCCCTCAGCATCATGCAAGTGGTTCAAGTGTTGGTTCCGGTGACACTTGGGGTTTTGTGCAGGATAGTTTCACCCCAGTTCGTAATAATGTACAGGCATCTAAGTCTTCTGGTAGTGAAAGCAAGGGTAATCCAGCAGTTTATGATTCATACAGTTCAAAATCTGATGGCCGAAGTTCACGATCTATAACTCAATCTCAACCTGCAGGATGGGCTGGATTTTGAGGATCAAGAAATTAATGCACTTGGTTATCCAAAGTTAAGTGTGCTGGGAAAACATCCCATGGTATTTATGCAAGATTTTCCTGTTTGCTCGTGAGGCATAACATTGTGAAGTTTTACTAAGGTGCAAGGTTATTGACTGCAGAAAATCAAGTTAGAGTTTCTTCTTAGAGATTCAGAAGTACAAATTTTCTGACTGTATAAGTGTGGTTTCATGTTATTATATGGAAATTTCAATTTGAGGTTGCCATGTTGGTAGTCAACAGTAGAACTTGAGATTTTATTTGATGCTTTCAAAAGTCATCAGAAGTTGGTTGTCATTTTAATAAAGATTATTTGAATGCCGAAAAAAAAAAAAAAAAAAAAAAAGAACCCTGGGTTGATACCC

Ace file of the UniGene sp_v3.0_unigene2294

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to protein kinase family protein n=1 Tax=Vitis vinifera RepID=UPI00019849D1	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Sma3	Putative AAK1 protein	-	-	3.114e-09	-

Source	Gene names
Sma3	At2g32850; CHLREDRAFT_167901; GSVIVT00003764001; OSJNBa0016G10.6-1; OSJNBa0016G10.6-2; Os09g0279100; OsI_07872; OsI_30675; OsJ_07336; OsJ_28650; P0701E06.30; PHYPADRAFT_166336; POPTRDRAFT_672679; RCOM_1771100; STPK7; VITISV_036304;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32850.2	Protein kinase superfamily protein chr2:13935448-13937977 REVERSE LENGTH=670	0.0	66%
RefSeq	Arabidopsis thaliana	NP_565756.1	AP2-associated kinase [Arabidopsis thaliana]	0.0	66%
RefSeq	Populus trichocarpa	XP_002330845.1	predicted protein [Populus trichocarpa]	9.0e-37	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7T1

Fln msg: No stop codon before M and low homology subject,

Fln protein: MEFCEKALVNVLESRAAAYFEEKQILLMFRDVCNAVYAMHCQMPPIAHRDLKAENVLMGADGVWKLCDFGSTSTNHKRFERPEEMGIEEDIIRKHTTPAYRAPEMWDLYRRELISEKVDIWALGCLLYRIAYLKSAFDGESKLQILNGNYRIPELPRYSSSLVELIKDMLTAAPEVRPDIMQARALLDWPPHLTETRYGAV*

Protein Length: 203

Fln nts: GCTGGATCTCGTCAAGAAAGAAGTTGCTGTATCGCGGTCCCTCCGCGGACACCCAAATGTGGTCACTCTTCATGCGCAGACTGTCTATGATCTGGGCCGAACTAAAGAATGCTTTCTGGTC_-_ATGGAGTTCTGCGAGAAGGCTCTGGTCAATGTTCTGGAAAGCAGAGCCGCCGCCTACTTCGAAGAGAAACAGATTCTTCTCATGTTTCGTGATGTCTGCAATGCTGTCTACGCGATGCATTGCCAAATGCCCCCAATTGCACACAGGGATCTGAAAGCTGAAAATGTTTTAATGGGTGCTGATGGTGTATGGAAGTTATGTGATTTTGGTAGCACTTCTACAAATCACAAGCGATTTGAGAGGCCCGAGGAGATGGGAATTGAAGAAGACATCATTAGAAAACACACAACTCCAGCTTACAGAGCACCTGAGATGTGGGATCTCTACAGAAGAGAGCTAATAAGTGAAAAGGTTGATATCTGGGCCCTTGGGTGTCTACTTTACAGGATAGCTTATTTAAAGTCTGCTTTTGACGGTGAATCGAAGCTACAAATATTGAATGGGAACTACCGCATTCCCGAGTTACCAAGATACAGTTCTTCATTGGTTGAATTGATCAAGGACATGCTCACAGCTGCTCCAGAAGTCAGACCCGATATCATGCAGGCAAGGGCTTTGCTTGATTGGCCCCCTCATCTCACTGAAACTAGATATGGCGCCGTGTAAATGAACTTCTACCAGTTGAGTTGCGTAAATCAAGTCCAGATAGACCATTATCTATGGCTAATTCTGAGGTACATGCTCCTCCTATGGACGCCCAAGATCATGGTAATCCTGTGCCAACAAGGCGAGCTCCTCCACTCCCATCTAGAACACCACCACCTCCACCTACATCAAAAGACCAAGATCGTCAGTCACCACCTATGGGACAACCAGATTTAAAGGCAATACAAGGTGGTGTTAGTAGTGGGAGCTCTTTAGGAGCATTTTGGTCAAGTCAGTATGCACAGGAATCTGTGCCCGTGGATGACAAAGGCCCTGTGTTTGATAAGGATCCTGGGAGTGAAAGTGTATTCAAGCAGCGGTCACAAAGCCCTGAAAGTCATCCAAAACAAGGCATTTTAAGTTCACCAAAGGAAAATCAGTCCAGAGCTGGACACATTTTGAAAAGCGGTATGTCAAACTTTATGAAGAAGGTGCATGCCTCACCACAACCTACAACACGGCAGGGATATGATGAAATGAATTCAGATATAAACCAGATAAGGCTTAGCTCTGAGGATACTGACCATGGGGATGAAAACACAATCGACTCTGGTGTATCTCCAGTGAAGGCTTCAGCTTCAGAAATTGGTGGGCCATTTCATGACGATTCATTTAATGCATTTGTTGCAGACTTTGATAACCATAAGCCCACCACTGGAACTAATGTGTTTGGCAAAGAAAGTTTACAAGTAGAAGTGGACAGATTGAAAGAAGAGCTGGAGCAGGTGCGCTTAGAAAAGGCAGAAATCACATCAAAGTATGAAAAATTGACAGCTATCTGCCGTTCTCAAAGGCAAGAGATACAAGAGTTAAAACAGACCTTGTCTACAGCAACTGCTCCGAACTTCACCACATTCAGTAAAGAAGGTAGCACAAAGCCAGTTGTACCCCAACAGGCACAAGTGCAACAGCTGAAACAACAGCAAAAACAGCGGTTGGTACCTGGAAGCTGGCACCCAGGCAACAAGCAAGAAGACAAGACAGAGGGATCTATTTGGGAACTGCAGGAAGGTATGTCTACTATGTCCTCCCATGGCGTGCCCTTCAAGGCCACTGATGCGAAGGAATGGCAACCATTTGGTGAATCACTGACCACAAAGTTGTCAAATTCTCCCCCATCCAATGTGTCTGGAGCCTCAAATGGTTACCGCCCTCAGCATCATGCAAGTGGTTCAAGTGTTGGTTCCGGTGACACTTGGGGTTTTGTGCAGGATAGTTTCACCCCAGTTCGTAATAATGTACAGGCATCTAAGTCTTCTGGTAGTGAAAGCAAGGGTAATCCAGCAGTTTATGATTCATACAGTTCAAAATCTGATGGCCGAAGTTCACGATCTATAACTCAATCTCAACCTGCAGGATGGGCTGGATTTTGAGGATCAAGAAATTAATGCACTTGGTTATCCAAAGTTAAGTGTGCTGGGAAAACATCCCATGGTATTTATGCAAGATTTTCCTGTTTGCTCGTGAGGCATAACATTGTGAAGTTTTACTAAGGTGCAAGGTTATTGACTGCAGAAAATCAAGTTAGAGTTTCTTCTTAGAGATTCAGAAGTACAAATTTTCTGACTGTATAAGTGTGGTTTCATGTTATTATATGGAAATTTCAATTTGAGGTTGCCATGTTGGTAGTCAACAGTAGAACTTGAGATTTTATTTGATGCTTTCAAAAGTCATCAGAAGTTGGTTGTCATTTTAATAAAGATTATTTGAATGCCGAAAAAAAAAAAAAAAAAAAAAAAGAACCCTGGGTTGATACCC

Fln Alignment:

Contig2294___YFEEKQILLMFRDVCNAVYAMHCQMPPIAHRDLKAENVLMGADGVWK--------LCDFGSTSTNHKRFERPEEMGIEEDIIRKHTTPAYRAPEMWDLYRRELISEKVDIWALGCLLYRIAYLKSAFD-------GESKLQILNGNYRIP--ELPRYSSSLVELIKDMLTAAPEVRPDI
D5A7T1______________FFTPGIVLHIFKQLCAGLKHMHSFDPPYAHNDVKPGNVLI----TWRKSQPPLAVLMDFGSAAPAKREVRSRSQALQVQEWAAEHCSAPYRAPELWDCPSNSDIDERTDIWSLGCTLYAIMYGVSPFEYSLGDSGGSLQLAAMSGQVKWPPGTNPPYPDSLRQFVTWMLQPQAAIRPHI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1840		87		12	0.992554
1841		87	12		0.992554
1901		87		12	0.992554
1919	11	88			0.923564
1921		88	11		0.923564
1922	88		11		0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain